TCONS_00045899 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045899
Unique NameTCONS_00045899
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2354

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045899 ID=TCONS_00045899|Name=TCONS_00045899|organism=Clytia hemisphaerica|type=transcript|length=2354bp
CTTGAGAGGGAGCACGTATGATCGATATGAAGGTGTGATCTTTCAGTCTG
AAAGTACGTCGTGAAAGTACCTGGAAGTTCTGTGTTCTCTACTACGAAAA
GTTCTCTACGAAATTTCTCATCACTACTTTTGataccattttgtttgttt
tcgtcCACGGCATCACATGCCTTCTTTTCATAAATCCACTGTAATATTTT
ATCCAATCAGGATCTTTGATTTATCGATAAAATTTGTTGCGCGGGAAATG
GTAGATAACACAACCACGTGCGAGCGTGCTACATGGTCGTTGTAAGAAAT
CTCGTAGGCGATAGGAGAAGGTGGGGTACCTCTTATCCTAGAGTAGATTT
ACTGGAGAATAGTTCAACCAATAGCAAAACAAATTAATCTGTCACAATGG
TCAAACGAAAGGTTTCAACGAATGGTGATGTCAAAggctcaaagaaaaca
aaaaatgagaaGCCTGGAATGGGAAAACTTCAAGTTACAACTCCTGGAGA
GACTTTTGGATCTTTGCTGGGCAAAGTTTCCATTGAAACTTTCATGAAAG
AAAACTGGGAACAGAAATTCCTGCATATTAAACGTGAAGATCAAGAATAT
TATGGCAGTTTGTTCTCACTGGAGGGCCTCAAAGAAATTGTAGAGGAAGA
GGAATTGTTCTTTGAGCGCGATATCAACTGCTGTCGCTATGTTGATGGGG
AAAAAGAACTATTAAATGAAGGAGAAGAAATTTCACTTAAAGATTTAAAC
GAACTTCTAGACAAGAAGAAAGCAACCTTACAGTTTCATCAGCCACAGCG
ATTTGAGGATGGTCTATGGAACCTCATGGAGAAAttagaaactcatttca
attcaCTGGTCGGAGCTAATGTTTATATCACACCCGCAGAATCACAAGGA
TTGGCTCCTCACTGTGATGACGTTGAGatttttgtgTTGCAATTAGAAGG
CAAAAAGACTTGGAAATTGTATGAACCACATGTCAAACTATCTCGTGACT
ACACTCAAGACCTTCTTCAGGATGCTATTGGTGAACCTATTTACGAATGT
ACTCTAGAACCTGGAGACATGTTATACTTTCCACGTGGAACTATCCACCA
AGCAAAAACTTTTGGGGATAGTCATTCTACACACATTTCAATGTCGACCT
TCCAAAACCATTGTGTGGGTGATTTTATGGATCACGCAGTTCGTATGGCA
ATCGAGAATGCTATGGAAGATGACGTCACTTTTAGACAGGGTCTCCCATT
AAACTATCGTAACTTTCTTGGCACTCAAAGAGACATGAGTAAATACGTTG
AGGATGATAAAGAAGATAAAATGTCAAACGAAAAAGATACAGAAGTTATG
AAATTCAAAAAGAGGATCAAGGATTATTTGTCGAAATTAGTTGATCACAT
TGATGTCAATAAGGCTGCTGATGCAATGTCATCTGACTTTATCGGAAGTC
GACTACCTCCCTTTGGCCATGCTCCTCCAGAAGTTGATGAAAATGAAGCT
GAACCACCCACCTTGGATTGTCAAATCAAGATGCGATACCCTGAACACGT
TCGAGTGATGTATCTAGATGAAGACACAGAAGATGATGAAGACGATGAAC
TCGAAATTGTAGAAGATGACGAGCAAGGTGACGAAAGTATGGagcaagaa
gaagaagaaaagaaacctGCTAAGGGTGCAAAGAAAAATGGCAAAGAAGA
AAAGGACGAGAAACCTAGCGATGAGAAAACGTCATCAGCCAAGAAGACAA
AAGAGAAACGCCGTTCAAAGACCGCCAGTGAAGTTGAAGATGACGAGGAT
AATGATCAAGATGCAGAAATGACTGAAACCGAATACCCCTGCATTGCTTT
TGTACACTCGCTCAATAATGAACGTGATGCTCACATGTGTGGACCTCAGC
CTAAGATGGACCCCTCCATGATCAAGCTTCCAGTTCACTTTGCACGTGCA
GCCAACTTCATCTTAAACGCCAAAGATTTCGTCAAAGTAAAAGATATTCC
CGATTTGGAAGAAGACAACGAAAAGCTCCTCCTCGCTACCAGCTTGTTCG
CTGATGACATCATCGAGATGAAATTTTAAGACCGTTGATTACTAGATATG
ATAGAACATTATGATATCTGAACTTTCGTTttgacaaaaactaaaaaaga
aaatcacaTTTGTGAACAAAAAGAAGATCGTTTCTTTTATATTATTTACA
CACAAACATgtacattttttatgttttctacACAAAAAGATACCGAAATT
AGAAACTTTTCTTTGAAAGTTGTGCAAGTGATTTTTATCTTTGTTTGGAC
CCTGTAAAGTTAGCCTTTTAGCCTAAAAAGTaccatttcaaaaataaagc
aaGA
Run BLAST on NCBI

transcript from alignment at scaffold_102:350923..365184-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045899 ID=TCONS_00045899|Name=TCONS_00045899|organism=Clytia hemisphaerica|type=transcript|length=14262bp|location=Sequence derived from alignment at scaffold_102:350923..365184- (Clytia hemisphaerica)
CTTGAGAGGGAGCACGTATGATCGATATGAAGGTGTGATCTTTCAGTCTG
AAAGTACGTCGTGAAAGTACCTGGAAGTTCTGTGTTCTCTACTACGAAAA
GTTCTCTACGAAATTTCTCATCACTACTTTTGATACCATTTTGTTTGTTT
TCGTCCACGGCATCACATGCCTTCTTTTCATAAATCCACTGTAATATTTT
ATCCAATCAGGATCTTTGATTTATCGATAAAATTTGTTGCGCGGGAAATG
GTAGATAACACAACCACGTGCGAGCGTGCTACATGGTCGTTGTAAGAAAT
CTCGTAGGCGATAGGAGAAGGTGGGGTACCTCTTATCCTAGAGTAGATTT
ACTGGAGAATAGTAAGTATGTCAATCTTTTTCCTGCTATAGAGTTTCCTT
AGTAGCTTGTTTTTAGTTGTGAGTCCACCAGGTTTTGAAATTTACAAAGC
TGATTTAATAAAGGAAGATCAAAAAGGTTTTATCCGATTATCAAAGTAAT
CAATAATAATGGTCACTGAACACCTTCAATCATTATTGATTACTTCGATC
ACAATCGAATGTTCGATTAGTACTGTCTGGTTTTATACGAGGTTGGATTG
TAGTCTGGAGAGCCATACTCTCTATTCAAACTTACACCACATAAGTAAAA
ATCCCATCAGAAGTAACCTGAGATCAGATTGTGAATGTTTTCTGCACACC
ACGCTGAAGCTCTAAAGGGATGTGTGAAAACAAACAATCTGACGAATATG
CAATCTCGAAATCGTAAGGACCGCGTTCGTCTAAAAGGACTGGGAATGAC
AACAAAGTTGCGCGATTGTCTTTATGAATAGGGCGCCGTATTAGTTTTTA
TTTTTCCGGCGCACAACAAGATTCTTGTTGTAGAATTTTCTGCGGGAGGA
CTATTTTCCTCAGATGTATAATTTTCAAGTGCCTTTAGAGGTTTACCGTG
CGCGTAAGAAAATTATGAACATCTGTTATCAGGTTAATCAGAAGCTACTT
GGCTTGAATTTCGTGCCAAAAAAGCTGTTGATAAAGTTAGCCAATCGGGG
TTGCGCAACGACCCTCGACATGGCCCGAGAATTCTCGGGCCAAAACTTTT
ATTGGAATGCGCATAAAGCCTGAGGATGGCCCGAGTTTTCGGGCCGCGGG
CGGGCCTCACGCGGGCTAACTTTTGAAATCATGATTTAAACCCGCGTGTA
ATTTCAGGACTGCATTAAACTGGTCCTGGTTTTAAACTTTTTGAAGCGTG
GTCCACGAGGAGTTTGTTTAGTTTATTTAGCAAGATGAACTGGATGAAAC
GCGACGAAATAAATTAAAATTAACATTTTCACACATTTTCAACGTCATTT
TCACGTTTAATTTCATTATGACTGGACAAGCTGGATTAATCAATGGAATC
TTCTGACACAGGCACAAAGGTATATGTTGAACAGTTTACGTCTTAAGTCG
TAGCTTTGGGCCAAAAGAATTGATAGGGTCTCTCGGCCCGAACATGGCCC
GAAGAGGCCCGAGAATTCTCAGGCCATGTTGAGGGTCGTGTCTCGCACTT
CAAATCAAAACAATAATATCACGTGATTTCAACAATTGTTTGTAACAGCC
AATATAATTCTGTGACCAGATTTAGCATCTACAAAAATACCCGGGTACTC
TGTTGTTTCTGTATTATTCAAACTGAGCAAAAAAATGTATTACACCAAAG
TCCCAACTTCCCTAGATCAAAAGTTATGGGCCTATTTTTGTGGTCAAAAA
CTGATGGAAAACAGGGAATTTCCCCACAATCTGCATTAATTTATGCAAAA
TTAAACACCTTTTTGGCCACAAATAGGCCGATAACTTTTGATCTAGAGAA
GTTGGGACTTTGGTGTAATACATTTTTTTGCTCAGTCTGAAGAGCTCTAT
CGTGTGATATAGGTCTTTTTTGGACCTACCTCCGGGTGCCCCGGTGGAGG
TCCTATAAATTAACCCATGTCCGTTCGTTGGTCCATCCGTCCGTCTGTTA
CCAGCTTTTCTCAGGATTGGCTCATTAGTTTTTTTTGATTTTTGGCACAA
TGATGCAAAATGGTAATGCCCAAAATGTGANNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNAAGATTTCATCATTAGTTTTTTCTGATTTTTTGCACAAAGATGCG
TATTAGCAATGCTCAAAACTTGGCCGAGTCCGATTTTTGAGAAAAATTCT
TTTCCGGCGGAAAATGCCTGAAATATGCCGGAAATCGCCGTTTTCTGGGT
TTTCATTGGCTTTTTCCTTTTAAATGGTTGTTTTTTTCATTCAAACACAT
TATTAATAGCAATGCCCACCATCAAGCATGTTTCAATTTTCAATAAAATT
GAATTTTGAACCCGGAACTATTTAAAAATCTCCGGAACAACCTATTTTCG
CTGGAAAGACAGTATTTTTTGAATTTCTCAAGCTGTACTTTATATTTTTT
TATGAGACATTTCACACCGATGCAAAATGACAATACCTAAAATGCGACGG
AACTTGATTTTCGAAAAACATTTTTTTCCGGCCGAAAATGCCGGAAATAT
GCCGGAAAAACCGGTTTTTTGACATTTCCTCAAATTTTTATCCTTAGTTT
TTTCTGATTTTTTGCAGAGAGATGCGTATTCGCAATGCTCAAAACATGGC
CGAGCTCGATTTTTGAGAAAAATTTCTTCTGGTGGAAAATGCCGGAAATC
ACCGTTTTTGCAGATTTTCATTGGATTTTTTCCTTATATTTCCAATTTTT
TTCACACAAAAACATTATTGATAACAATGCTCACCATCAAGCATGATTTA
ATTGTCAATAAAACTGATTTTGCGACCAGAACTTTCGATTTATTGTTTCC
TTACAACCCTTTCCTCTCCCCCCATCAACAATCAATGATGAATTTTTGCG
TTATGCATTTTCGCTAAACGCTATATTTTCTGACTGATTTTTTTCATTTT
TCTCCTCGCATTGCTATCTAACTTTCATCATCAGGTAGGTCCATTCAGCA
TCTAGCTTGTTTAATTTGAAGACCCCCCAAAGATCATGAATTTCAAGGCC
TTGCAATTTTGCCTGGAAACGCCAAAAATCGCCAATTACTTGTTACTTGC
ACGATAATATCGTGGAAACTTTTTGATTTTTGATTTTGGAATCTACATAT
ACTAATTCGTGAGTTTCCACCAAAAAAAGTTAGTTCTAAGATGTGTGTCA
CGAAAATTGTTTTCTATCCACTTTTTTCGATCTCAGCAGCAGGACTAAAC
AAATTTTTGTGGAATTTGATTTGCCTTTTGTAAAATCAACTTTTGTAAAA
CTTCCAAATTTAGAAGTAATACTTTGTAATACACCTTGACGCACTTTGTG
ATAAAAACTGATACACTTTGTAATTATTAAAAAAATTTATAAAAGCCTGG
TAAATTGCACAAAGTGTGGCGTTATTACAAAGTGCCTTAGTACAACATTT
TACTATTACAGTAACCAAACAGCTGCATTTGATAGTTTGAGGGGAAAGAA
ATTTCAGAGACAGATTTTAGCGATACAAAAGTAAGATTTAGAATGGCAAC
ATTCCCCACTTGGAGGTAGACAAAATTTCTCATTCCTGGTTTATTAAGCT
CTAGGGATTCTCACTTCTTGATGGAATCAGCCTGGAAAAAATGTATCACT
ACACTATTAAGGGAACTTGTTTTGGCAAGTTTGGACAAAATTTGCCAAAA
TTAGTTCAGATTATTTAATATATTTAAGGTTCAACCAATAGCAAAACAAA
TTAATCTGTCACAATGGTCAAACGAAAGGTTTCAACGAATGGTGATGTCA
AAGGCTCAAAGAAAACAAAAAATGAGAAGCCTGGAATGGGAAAACTTCAA
GTTACAACTCCTGGAGAGACTTTTGGATCTTTGCTGGGCAAAGTTTCCAT
TGAAACTTTCATGAAAGAAAACTGGGAACAGAAATTCCTGCATATTAAAC
GTGAAGATCAAGGTAACTGTTTACTCTCAGGCTCCTATAACCCCAATTAA
AAGAGGCTGCAAATTTTTCAAATACACATAATCAAGATGATAATATGTAA
TAATTCAAGATTCCTCTCATCTGTTATTTCAACAAGATAAAACTAGTTTT
TTCTTCTGCAATGACAGTTTTAAATCTTAAAATGTTTATATTTCAGAATA
TTATGGCAGTTTGTTCTCACTGGAGGGCCTCAAAGAAATTGTAGAGGAAG
AGGAATTGTTCTTTGAGCGCGATATCAACTGCTGTCGCTATGTTGATGGG
GAAAAAGAACTATTAAATGAAGGAGAAGAAATTTCACTTAAAGATTTAAA
CGAACTTCTAGACAAGAAGAAAGCAACCTTACAGTTTCATCAGCCACAGC
GATTTGAGGTAACCTGAGACAAACCCTGAACATAAATTGTTTGAAGGACG
TTATCTTGAAACAAACGAAACATTATTTTCCAATGGGGTTGTCCTTGACA
ATAAAGGAGAGGTACTTCAAACCAAAACATACTCAATCAGACTAAATCTT
ACTTTTTGAATGCCCCCAAATGTGAATGTTTGTAAGATACTTTTATTTCT
CTATTAGGATGGTCTATGGAACCTCATGGAGAAATTAGAAACTCATTTCA
ATTCACTGGTCGGAGCTAATGTTTATATCACACCCGCAGAATCACAAGGA
TTGGCTCCTCACTGTGATGACGTTGAGGTACTGTTTTGATTTTAAAGCTC
CAGCTGGCTCTAGTGATACAGAAAAGTCTCTTACATAAAATTTGACAAAT
GCATCAAAAACAATTTGTTGTGTTTGCAAATTACTAAAAACAGACTGTTC
AATCTATAATAGTAACAATTGGTGCTGTAGTTACTATATATCTAAATTTT
GTATCTCATTCTCACTTTAAAAGCCTTTTCTCCTGAGCAATGATGATTCA
GTAAAAGGTATGATCAGAATTTGATGGCAGTTCTCTTTCTCGGTTTTGGC
ATCAAGTTTTAGCCAAAACCATTTTTGCAACCTGACATTAAATTGTCTGT
ATATGGATTGGGTTATGTAAAGTCAACAAACCCAGCAAAGGGCAGACAAA
TATTTCAACACTACAAAAGGTTTGCAAAGAAAAGAGATTTTGCCTCAAAT
CTGGACATGACTACATCGTGCAAGCTGAGCTCAGGATAGTCAAATATGTT
CTATTTTAACAAGTGATGTAGTAGGTTTCAGTGATAGACTAGTAATATAA
TCCTTTTTGGACCTACCCCAGTGGGGTGGAGGTCCTATGAATTAACCTGT
GTTTGTTTGTTCGTCTGTTACCAACTTTTCTCCGGATTGAATCATAGGAA
TCTTTTGATTTTTGGTACAACGGTGCAAAATGGTGTTGGCCAAAATGTGA
CGGAGCCCGATTTTCGAGAAAAAAAAATTGGGGGGCAAATTTTGGCCTAA
AAACAGCTAAAAAACAGGTTTTTTGGACTTTGTGAAAAATTGGATCATTA
ATTTTTTCTGATTTTTTGCATGAAAGTAGGGTACCATCATAGGTAAAAGA
TGGCTCATGCAGATTTTTGAAAAAATAATTTGTTGGCTCAAAAAATGCAT
GTTTATCTATAAGAATCACTATTAATAAGCATACATCAATGTTCTTAGCC
ATATTATTTTTATTAGTTTTTTGGACCTACCTTGGAGGTCCTATAAATTA
ACCGATGTCCGTTCGTCCGTTCTACCATCTTTTCTCAGGATTGACTCATT
AGTTTTTTCAAATTTTTGGCACAATGATGCAAAATGGCAATGCCCAAAAT
GTTGATATGCTGGAAAAACTGTTTTTTGGCATTTTCTCGAGATTTTATCA
TTAGTTTTTCCTGATTATTTGCTCAAAGATGCGTATTAACAATGCCAAAA
ACATGGCTGAGTCCGATTTTTGAGAAAAAAAATTCCGGCTTAAAATGCCG
GAAATCACCGTTTTTCTGGATTTTCATTGGACTTTTTCCTTATAACTGGT
TGTTTTTTCATTCAAAAACGTTAATAATAGCAATGCCCACCATCAGGCAT
GTTTTTCATTTTTGAAGCCGGAACTATTTAAAAATCGCTGGAAAGACAGT
ATTTCTTGAATTTCTCAAGCTGTACTTTATATTTTTTATGAAATTTTGCA
CACTGATGCAAAATGACAATATCTAAAATGTGACGAAGCCCGATTTTCGA
AAAACATTTTTTCTTGTCGAAAATGCCGGAAATATGCCGGAAAAACCGTT
TTTTGGCATTTCCTCGAGATTTGATCATTAGTTTTTTCTGATTTTTTGCA
CAAAGATGCGTAATAGCAATGCCCAAAACATGGCCGAGTTCGATTTTGGA
GAAAAATTCTTTTCTGGCCGAAAATGCCAGAAATATACCGGAAATCTCCG
TTTTTGCAGATTTTCATTGGACTTTTTCCTGATATTTCTTTGTTTTTTCA
CGCAAAATCATTATTGATAACAATGCCAACCATCAAGTATGGTTCAATTG
TCAATTTTCAACTGTCAACTTTCTAAAAATCGCCAGAACAGCCGAATATT
GCCAGAAAAACAGTTTTTCTTGAATTTCTCGAGCTGTACTTTATATTTTT
TCATGAAATTTTGCACACTGATGCAAAATGCCAATACCTAAAATGTGACG
GAGCCTGATTTTGGAGAAAAAAATATTTCTGCCAAAAATGCTGATAATAT
GCCGTCAAAACCGGTATGTTGCCATTTTGTCAAGATTTCATTAATAGTTT
TTCCCAATTTTTGCACAAAGATGTGTATCAGCAATGCCCTAAGTGTGGTC
GTTTTTGCAGATTTGAATTGGGCTTTTTCCATATATTTCTTTGTTTTTTC
ACTTAAAAAAATTATTGATAACAATGCCACCATCAAGCATGATTCAAATC
GTCAATAAAACTTTTGCAATTTTGCAACCGGAACAGGGGGGGGTCAGTGT
ACTAGAAGATGGCATGTATGTGTACTACAAGGTATTTTTCAGAACTTGAC
ACCCACCCACCCCTGAAGTACACCATACTACATGGAAAAATTCCAAAACC
ACCCCATACCCCCTATTTACTACCGGGTAGTACCTGGAAAAAAAATAAAA
CCACCCCATACCCCCCATTTACTACCGGTTACTTCCTGGAAAAATTCAGA
AAATAGAGAAACTTTTTTCCGTAAGTCGGAAAATTGGGTAAACATTTTTC
CAAAAATCGGGAAATCAGGAATCTTTTTTTTCGGAAAATCGGGAAATTGG
GAAAACTTTTTTCCAAAAATCAGAAAAACAGGAAAATTTTTCTCAAAAAT
CCAAAATGCGTGAGAAATCAAACTTTTCAAAAATTACGTGAAACCAAGTG
GAAATGCATGAGTCTCACAACCAATGCGTGAGAGTTGNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC
CCCCTGACCGGAACTTTCTATTTCTTTTTCTGGAAACACCTCCCCCCCCC
CATCAACAATCAATGATGAAATTTAATGCATTTTCGCTAACCACTATATT
TTCTTAATGATTGTTTTTCTCTTTATTGCTATCTAAGTTTCATCATCAGG
TAGGTTCATTCAGCATGTTGCTTTCATTTTTCTTTATTTTTTTTGTATTT
TGGTCAGTTATGTCTTATGTGTTTCATTGTTTAATGTTCATTGATTAGTT
TGATAACCAGGTAGGTCCATAAAAGTATCACTTGTTATGTTTAGATTTTT
GTGTTGCAATTAGAAGGCAAAAAGACTTGGAAATTGTATGAACCACATGT
CAAACTATCTCGTGACTACACTCAAGACCTTCTTCAGGATGCTATTGGTG
AACCTATTTACGAATGTACTCTAGAAGTAAGGATTTGAGAATCTTTTTTG
GACCTACCCCGGTGGGGTGGAGGTCCTATAAATTAACCTGTGTTCGTTAG
TTAGTTAGTTAGTTAGTACGTTAGTTACCAACTTTTCTCGAGATTGGCTC
ATTCAATTTTTCTGATTTTTTGCACAAAGGTGCATTACTATAAACCCTCG
AATGTGACGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNGTTAAACATCGATGCGTTTCTTAATTGCTTTCTCC
GTTCCAATAGATATATAAATCGAAATTTAAAATTATACATTACTTCCATT
AAATTCTAATTATTGGTTTTATAAATAGGTAGGTCCATTAAAGTATTACT
TGTTTTTTGTGGGTTAATTAAGCCCTTTCAGGGTTATTCAAGATTTCCAA
TAACAAATGTTTTTAAAGCTAACAATATGGTTTGAAGATTCAATTAGACA
ATTAACTTTGGACTTCTTTTTCCATAGCCTGGAGACATGTTATACTTTCC
ACGTGGAACTATCCACCAAGCAAAAACTTTTGGGGATAGTCATTCTACAC
ACATTTCAATGTCGACCTTCCAAAACCAGTAAGTCCATTAATTAGGGAGC
ATACTTCTTATTCCACTGTTTTAAAATGGTGACCTGAAGGCTCTTTTGAT
ATCTGCTCACCAAAAGGTAGGTGGGATGCTCTATCTTCATGTTACGGCTA
CTACTTTATGCGTACAAGCTTTTGCGAATGTAAATGTCTTTGAAAATTAA
ATTTTAATGTCCTTATTCGTGAAAGTTTATGCTTGAAAAAAGGTTTTTTC
GTCGAATTCGCGAAAGTAAATGTCGTAAATTTCGCGACTTTTCGACCTCG
TGAAAGTTTGTACGTCTAAAAGTAAGGTTTATTATTTCAGAGCAGGTTTG
TTCAAAATAAACTGAACAGTTAAATTTCAATCTATTCCATACATCTAAAG
GAAAAGGTAATGCTGTTATTCTATTCNCAAAATAAACTGAACAGTTAAAT
TTCAATCTATTCCATACATCTGAAGGAAAAGGTAATGTTGTTATTCTATT
TTTAATCTCTTTCCAGTTGTGTGGGTGATTTTATGGATCACGCAGTTCGT
ATGGCAATCGAGAATGCTATGGAAGATGACGTCACTTTTAGACAGGGTCT
CCCATTAAACTATCGTAACTTTCTTGGCACTCAAAGAGACATGAGTAAAT
ACGTTGAGGATGATAAAGAAGATAAAATGTCAAACGAAAAAGATACAGAA
GTTATGAAATTCAAAAAGAGGATCAAGGATTATTTGTCGAAATTAGTTGA
TCACATTGATGTCAATAAGGCTGCTGATGCAATGTCATCTGACTTTATCG
GAAGTCGACTACCTCCCTTTGGCCATGCTCCTCCAGAAGGTATATTTTTT
GGGATATCACCTCGCGTGTATCTACGTCACAAACTTAAAACCTTTCCAAT
TTGTAATATCATTGAGAATAACACAGCATTAATAGTACACTTCAGTTACT
GAACCTTATACTGAAACTAGTTTTCATAGAAAACACCTTTTTCCATGAAT
GACGAAATGAAGGGTACGTTTTTTGTAAAAATGATTTCCTGAAGAACGTC
GACTTCCCCTTTCCCCTTTTGAGATTTGCAGAGATCAAGTCAGTATCTTA
TTTTTACAATAGGCGCTAACAAAAAGAGGCTTATTAGTCAGCCCCGGTGA
CTCTTCAAATCGGTTCGACGATTTTTTTNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCTCA
GATTTTAACAAAGCCAGATTTCTTATCTGTACTTCCTATTAATCATTCTA
AGCCTTCTAAGCATTTTGGGCTGACTTTCCAGCGCAGCTGGTTTATTTGA
AGTTCTCTTTTTAGGCTATTGCTATTGTCACGTCATTCTCTCTCCTTAGT
TGATGAAAATGAAGCTGAACCACCCACCTTGGATTGTCAAATCAAGATGC
GATACCCTGAACACGTTCGAGTGATGTATCTAGATGAAGACACAGAAGAT
GATGAAGACGATGAACTCGAAATTGTAGAAGTGAGTAAAATAGAAAAATA
ATGCCTCTCTAAGGTTGGTTCCCGCAAAATCTCATTCCTGAGGTAACTCT
TCAGTAAGTCTAGAGCAAGAATCTAACATGGTTTGAAACCCGTAGAAAAA
CCAGGGGACTAGATGTAGTTAGGTCTTTGTTATATTTGCACTTCTTTGAA
ACAATTTTCGGTTTTTGGGATAATATACACCAGCTTCATTAGGCCACCAA
GTAGTTCATAAGATATATCAAAGCTGAGCCCAGAGTAACTCGTATGCTCT
TCTTCTATATCGCAAAACATTTTAACTGTGGTCTACATTTCTTTCACCTC
GTGACAAATTGTAGACTAATGAAAGCACAAACAAGACTCACTGGAAATTG
GTGCAAGCTCCTCTCACAAAAATAGAAATTAGGTTTGATAGTTTTCGTAT
CTAAAAACCAAAGAGCAAAAGGAAATCATTTATGATAAAACTATTCTTCT
TTTATAAGGATGACGAGCAAGGTGACGAAAGTATGGAGCAAGAAGAAGAA
GAAAAGAAACCTGCTAAGGGTGCAAAGAAAAATGGCAAAGAAGAAAAGGT
TTGTTCAAATACGATTACGAATACGCGCTATTTAAAGTTTTGAATTTGAA
AGCACTTAAAATTCTTACGCGGGAAAATGATATGATGATGATACTTTCTA
CTGAAATTTACTGCAAATACTACGAAGGCGTGTAGGATTGATAAATATTG
AAAGCTAGTGTTTCTTCTCAAAAGTTATCGTCTTTATTAGTTGATAATTG
CCAAAATGATTCACTGCATTTGCGCGTACTGTAAGAATTGATAGAAAATA
CAAATTAATAAGAGCGTCTTGTTATCGTGCCTGTTAGGACGAGAAACCTA
GCGATGAGAAAACGTCATCAGCCAAGAAGACAAAAGAGAAACGCCGTTCA
AAGACCGCCAGTGAAGTTGAAGATGACGAGGATAATGATCAAGATGCAGA
AATGACTGAAACCGAATACCCCTGCATTGCTTTTGTACACTCGCTCAATA
ATGAACGTGATGCTCACATGTGTGGACCTCAGCCTAAGATGGACGTAAGT
ATTCTGTTTGTCTACCTTCGTAGGTGCCCTCCAGTGCATGGCCCCCGTCA
CCGCAATATTTTGCAAAGTAATTTTTTTTACTTTAAAAAATCTTATATAT
ACCGTTGAGAGGGGTGAAATAAGGGTAAAAAGTCGAAAATTTTCTTTGTC
GCCCAACCGTGGTGGGCAACATATTTTTTGGCCCCTCAATTCGATTCGCA
CGCCGGGGGCCATGCAGTGGTTTGCGTGAATGCATGAATAGACTTTTTCA
CTTGTGTGAATGCGTTTATACACTTCCTTTAAATGTGTCACTCTGAAAAG
TTAAAGAGGGTAGGGGATAATTGGCCCTTCCAGAGAAAAGGTACGTTACG
TCACGCTGATATTTAAATGGTTATCGCCAGTAAGGACCTTGGAACACCAC
GACCCATGCACCATCTGCCTCCATTCTCGGAATGGTCCTAATGTAGATAC
CCAGTTCGATATTTTGTTGTCCCTACCAGAATCCCTCTCTGTTACATTCT
ATTGTACATGACTTACCCATTCCGCAATGAATATTTCGAAGCGCAGGCCC
AATAACTAATTTTTTTCGTTTTCGCTCTTTCTAGCCCTCCATGATCAAGC
TTCCAGTTCACTTTGCACGTGCAGCCAACTTCATCTTAAACGCCAAAGAT
TTCGTCAAAGTAAAAGATATTCCCGATTTGGAAGAAGACAACGAAAAGCT
CCTCCTCGCTACCAGCTTGTTCGCTGATGACATCATCGAGATGAAATTTT
AAGACCGTTGATTACTAGATATGATAGAACATTATGNTCCTCGCTACCAG
CTTGTTCGCTGATGACATCATCGAGATGAAATTTTAAGACCGTTGATTAC
AAGATATGATAGAACATTATGATATCTGAACTTTCGTTTTGACAAAAACT
AAAAAAGAAAATCACATTTGTGAACAAAAAGAAGATCGTTTCTTTTATAT
TATTTACACACAAACATGTACATTTTTTATGTTTTCTACACAAAAAGATA
CCGAAATTAGAAACTTTTCTTTGAAAGTTGTGCAAGTGATTTTTATCTTT
GTTTGGACCCTGTAAAGTTAGCCTTTTAGCCTAAAAAGTACCATTTCAAA
AATAAAGCAAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029323XLOC_029323Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045899-exon-scaffold_102-1575043694:364824..365184TCONS_00045899-exon-scaffold_102-1575043694:364824..365184Clytia hemisphaericaexon
TCONS_00045899-exon-scaffold_102-1575043694:361023..361256TCONS_00045899-exon-scaffold_102-1575043694:361023..361256Clytia hemisphaericaexon
TCONS_00045899-exon-scaffold_102-1575043694:360627..360838TCONS_00045899-exon-scaffold_102-1575043694:360627..360838Clytia hemisphaericaexon
TCONS_00045899-exon-scaffold_102-1575043694:360308..360427TCONS_00045899-exon-scaffold_102-1575043694:360308..360427Clytia hemisphaericaexon
TCONS_00045899-exon-scaffold_102-1575043694:356809..356940TCONS_00045899-exon-scaffold_102-1575043694:356809..356940Clytia hemisphaericaexon
TCONS_00045899-exon-scaffold_102-1575043694:355507..355607TCONS_00045899-exon-scaffold_102-1575043694:355507..355607Clytia hemisphaericaexon
TCONS_00045899-exon-scaffold_102-1575043694:354696..355018TCONS_00045899-exon-scaffold_102-1575043694:354696..355018Clytia hemisphaericaexon
TCONS_00045899-exon-scaffold_102-1575043694:353105..353235TCONS_00045899-exon-scaffold_102-1575043694:353105..353235Clytia hemisphaericaexon
TCONS_00045899-exon-scaffold_102-1575043694:352537..352626TCONS_00045899-exon-scaffold_102-1575043694:352537..352626Clytia hemisphaericaexon
TCONS_00045899-exon-scaffold_102-1575043694:352041..352247TCONS_00045899-exon-scaffold_102-1575043694:352041..352247Clytia hemisphaericaexon
TCONS_00045899-exon-scaffold_102-1575043694:351255..351450TCONS_00045899-exon-scaffold_102-1575043694:351255..351450Clytia hemisphaericaexon
TCONS_00045899-exon-scaffold_102-1575043694:350923..351169TCONS_00045899-exon-scaffold_102-1575043694:350923..351169Clytia hemisphaericaexon
TCONS_00045899-exon-scaffold_102-1510915933:364824..365184TCONS_00045899-exon-scaffold_102-1510915933:364824..365184Clytia hemisphaericaexon
TCONS_00045899-exon-scaffold_102-1510915933:361023..361256TCONS_00045899-exon-scaffold_102-1510915933:361023..361256Clytia hemisphaericaexon
TCONS_00045899-exon-scaffold_102-1510915933:360627..360838TCONS_00045899-exon-scaffold_102-1510915933:360627..360838Clytia hemisphaericaexon
TCONS_00045899-exon-scaffold_102-1510915933:360308..360427TCONS_00045899-exon-scaffold_102-1510915933:360308..360427Clytia hemisphaericaexon
TCONS_00045899-exon-scaffold_102-1510915933:356809..356940TCONS_00045899-exon-scaffold_102-1510915933:356809..356940Clytia hemisphaericaexon
TCONS_00045899-exon-scaffold_102-1510915933:355507..355607TCONS_00045899-exon-scaffold_102-1510915933:355507..355607Clytia hemisphaericaexon
TCONS_00045899-exon-scaffold_102-1510915933:354696..355018TCONS_00045899-exon-scaffold_102-1510915933:354696..355018Clytia hemisphaericaexon
TCONS_00045899-exon-scaffold_102-1510915933:353105..353235TCONS_00045899-exon-scaffold_102-1510915933:353105..353235Clytia hemisphaericaexon
TCONS_00045899-exon-scaffold_102-1510915933:352537..352626TCONS_00045899-exon-scaffold_102-1510915933:352537..352626Clytia hemisphaericaexon
TCONS_00045899-exon-scaffold_102-1510915933:352041..352247TCONS_00045899-exon-scaffold_102-1510915933:352041..352247Clytia hemisphaericaexon
TCONS_00045899-exon-scaffold_102-1510915933:351255..351450TCONS_00045899-exon-scaffold_102-1510915933:351255..351450Clytia hemisphaericaexon
TCONS_00045899-exon-scaffold_102-1510915933:350923..351169TCONS_00045899-exon-scaffold_102-1510915933:350923..351169Clytia hemisphaericaexon
TCONS_00045899-exon-scaffold_102-1491911889:364824..365184TCONS_00045899-exon-scaffold_102-1491911889:364824..365184Clytia hemisphaericaexon
TCONS_00045899-exon-scaffold_102-1491911889:361023..361256TCONS_00045899-exon-scaffold_102-1491911889:361023..361256Clytia hemisphaericaexon
TCONS_00045899-exon-scaffold_102-1491911889:360627..360838TCONS_00045899-exon-scaffold_102-1491911889:360627..360838Clytia hemisphaericaexon
TCONS_00045899-exon-scaffold_102-1491911889:360308..360427TCONS_00045899-exon-scaffold_102-1491911889:360308..360427Clytia hemisphaericaexon
TCONS_00045899-exon-scaffold_102-1491911889:356809..356940TCONS_00045899-exon-scaffold_102-1491911889:356809..356940Clytia hemisphaericaexon
TCONS_00045899-exon-scaffold_102-1491911889:355507..355607TCONS_00045899-exon-scaffold_102-1491911889:355507..355607Clytia hemisphaericaexon
TCONS_00045899-exon-scaffold_102-1491911889:354696..355018TCONS_00045899-exon-scaffold_102-1491911889:354696..355018Clytia hemisphaericaexon
TCONS_00045899-exon-scaffold_102-1491911889:353105..353235TCONS_00045899-exon-scaffold_102-1491911889:353105..353235Clytia hemisphaericaexon
TCONS_00045899-exon-scaffold_102-1491911889:352537..352626TCONS_00045899-exon-scaffold_102-1491911889:352537..352626Clytia hemisphaericaexon
TCONS_00045899-exon-scaffold_102-1491911889:352041..352247TCONS_00045899-exon-scaffold_102-1491911889:352041..352247Clytia hemisphaericaexon
TCONS_00045899-exon-scaffold_102-1491911889:351255..351450TCONS_00045899-exon-scaffold_102-1491911889:351255..351450Clytia hemisphaericaexon
TCONS_00045899-exon-scaffold_102-1491911889:350923..351169TCONS_00045899-exon-scaffold_102-1491911889:350923..351169Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_102supercontigscaffold_102:350923..365184 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
373.06	358.516	425.907	466.528	33.5255	31.4596	36.9559	43.6367	24.3077	26.3193	19.4148	29.9883	41.1615	40.4223	44.534	43.8501	47.5312	38.7318	5.09272	4.75303	36.0545	35.905	203.048	169.09	122.614	146.775	23.209	21.6007	105.444	116.656
Blast
[Close]
BLAST of TCONS_00045899 vs. Swiss-Prot (Human)
Match: RIOX2 (Ribosomal oxygenase 2 OS=Homo sapiens GN=RIOX2 PE=1 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 1.616e-78
Identity = 162/399 (40.60%), Postives = 232/399 (58.15%), Query Frame = 1 
Query:  403 KRKVSTNGDVKGSKKTKNEK----PGMGKLQVTTPGETFGSLLGKVSIETFMKENWEQKFLHIKRED---QEYYGSLFSXXXXXXXXXXXXXXXXRDINCCRYVDGEKELLNEGEEISXXXXXXXXXXXXATLQFHQPQRFEDGLWNLMEKLETHFNSLVGANVYITPAESQGLAPHCDDVEIFVLQLEGKKTWKLYEPHVKLSRDYTQDLLQDAIGEPIYECTLEPGDMLYFPRGTIHQAKT-FGDSHSTHISMSTFQNHCVGDFMDHAVRMAIENAMEDDVTFRQGLPLNYRNFLGTQRDMSKYVEDDKEDKMSNEKDTEVMKFKKRIKDYLSKLVDHIDVNK--AADAMSSDFIGSRLPPFGHA-PPEVDENEAEPPTLDCQIKMRYPEHVRVMYL 1566
            K K + +G  +G    K  K     G   L   +P   F SL+  +  ETF KE WEQK L I+R+D     YYGSLF L  LK +      +  RD+N CR V+G+K++LN+  +     L +  D+K+AT+QFHQPQRF+D LW + EKLE +F SLVG+NVYITPA SQGL PH DDVE+F+LQLEG+K W+LY P V L+R+Y+ +  ++ IG P++E  L+PGD+LYFPRGTIHQA T  G +HSTH+++ST+QN+  GDF+   +   + +  ++DV  R G+P          R +   VE            T V    +R+  +L  L D ++  K   +  M  DFI  RLPP+      E+     + P LD  +++++ +H+ +  L
Sbjct:    4 KAKPTGSGKEEGPAPCKQMKLEAAGGPSALNFDSPSSLFESLISPIKTETFFKEFWEQKPLLIQRDDPALATYYGSLFKLTDLKSLCSRGMYYG-RDVNVCRCVNGKKKVLNKDGKAHFLQLRKDFDQKRATIQFHQPQRFKDELWRIQEKLECYFGSLVGSNVYITPAGSQGLPPHYDDVEVFILQLEGEKHWRLYHPTVPLAREYSVEA-EERIGRPVHEFMLKPGDLLYFPRGTIHQADTPAGLAHSTHVTISTYQNNSWGDFLLDTISGLVFDTAKEDVELRTGIP----------RQLLLQVES-----------TTVAT--RRLSGFLRTLADRLEGTKELLSSDMKKDFIMHRLPPYSAGDGAELSTPGGKLPRLDSVVRLQFKDHIVLTVL 377
The following BLAST results are available for this feature:
BLAST of TCONS_00045899 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RIOX21.616e-7840.60Ribosomal oxygenase 2 OS=Homo sapiens GN=RIOX2 PE=... [more]
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