TCONS_00045897 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045897
Unique NameTCONS_00045897
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2080

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045897 ID=TCONS_00045897|Name=TCONS_00045897|organism=Clytia hemisphaerica|type=transcript|length=2080bp
AAGTTCAACCAATAGCAAAACAAATTAATCTGTCACAATGGTCAAACGAA
AGGTTTCAACGAATGGTGATGTCAAAggctcaaagaaaacaaaaaatgag
aaGCCTGGAATGGGAAAACTTCAAGTTACAACTCCTGGAGAGACTTTTGG
ATCTTTGCTGGGCAAAGTTTCCATTGAAACTTTCATGAAAGAAAACTGGG
AACAGAAATTCCTGCATATTAAACGTGAAGATCAAGAATATTATGGCAGT
TTGTTCTCACTGGAGGGCCTCAAAGAAATTGTAGAGGAAGAGGAATTGTT
CTTTGAGCGCGATATCAACTGCTGTCGCTATGTTGATGGGGAAAAAGAAC
TATTAAATGAAGGAGAAGAAATTTCACTTAAAGATTTAAACGAACTTCTA
GACAAGAAGAAAGCAACCTTACAGTTTCATCAGCCACAGCGATTTGAGGA
TGGTCTATGGAACCTCATGGAGAAAttagaaactcatttcaattcaCTGG
TCGGAGCTAATGTTTATATCACACCCGCAGAATCACAAGGATTGGCTCCT
CACTGTGATGACGTTGAGatttttgtgTTGCAATTAGAAGGCAAAAAGAC
TTGGAAATTGTATGAACCACATGTCAAACTATCTCGTGACTACACTCAAG
ACCTTCTTCAGGATGCTATTGGTGAACCTATTTACGAATGTACTCTAGAA
CCTGGAGACATGTTATACTTTCCACGTGGAACTATCCACCAAGCAAAAAC
TTTTGGGGATAGTCATTCTACACACATTTCAATGTCGACCTTCCAAAACC
ATTGTGTGGGTGATTTTATGGATCACGCAGTTCGTATGGCAATCGAGAAT
GCTATGGAAGATGACGTCACTTTTAGACAGGGTCTCCCATTAAACTATCG
TAACTTTCTTGGCACTCAAAGAGACATGAGTAAATACGTTGAGGATGATA
AAGAAGATAAAATGTCAAACGAAAAAGATACAGAAGTTATGAAATTCAAA
AAGAGGATCAAGGATTATTTGTCGAAATTAGTTGATCACATTGATGTCAA
TAAGGCTGCTGATGCAATGTCATCTGACTTTATCGGAAGTCGACTACCTC
CCTTTGGCCATGCTCCTCCAGAAGTTGATGAAAATGAAGCTGAACCACCC
ACCTTGGATTGTCAAATCAAGATGCGATACCCTGAACACGTTCGAGTGAT
GTATCTAGATGAAGACACAGAAGATGATGAAGACGATGAACTCGAAATTG
TAGAAGATGACGAGCAAGGTGACGAAAGTATGGagcaagaagaagaagaa
aagaaacctGCTAAGGGTGCAAAGAAAAATGGCAAAGAAGAAAAGGACGA
GAAACCTAGCGATGAGAAAACGTCATCAGCCAAGAAGACAAAAGAGAAAC
GCCGTTCAAAGACCGCCAGTGAAGTTGAAGATGACGAGGATAATGATCAA
GATGCAGAAATGACTGAAACCGAATACCCCTGCATTGCTTTTGTACACTC
GCTCAATAATGAACGTGATGCTCACATGTGTGGACCTCAGCCTAAGATGG
ACCCCTCCATGATCAAGCTTCCAGTTCACTTTGCACGTGCAGCCAACTTC
ATCTTAAACGCCAAAGATTTCGTCAAAGTAAAAGATATTCCCGATTTGGA
AGAAGACAACGAAAAGCTCCTCCTCGCTACCAGCTTGTTCGCTGATGACA
TCATCGAGATGAAATTTTAAGACCGTTGATTACTAGATATGATAGAACAT
TATGNTCCTCGCTACCAGCTTGTTCGCTGATGACATCATCGAGATGAAAT
TTTAAGACCGTTGATTACAAGATATGATAGAACATTATGATATCTGAACT
TTCGTTttgacaaaaactaaaaaagaaaatcacaTTTGTGAACAAAAAGA
AGATCGTTTCTTTTATATTATTTACACACAAACATgtacattttttatgt
tttctacACAAAAAGATACCGAAATTAGAAACTTTTCTTTGAAAGTTGTG
CAAGTGATTTTTATCTTTGTTTGGACCCTGTAAAGTTAGCCTTTTAGCCT
AAAAAGTaccatttcaaaaataaagcaaGA
Run BLAST on NCBI

transcript from alignment at scaffold_102:350923..364821-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045897 ID=TCONS_00045897|Name=TCONS_00045897|organism=Clytia hemisphaerica|type=transcript|length=13899bp|location=Sequence derived from alignment at scaffold_102:350923..364821- (Clytia hemisphaerica)
AAGTATGTCAATCTTTTTCCTGCTATAGAGTTTCCTTAGTAGCTTGTTTT
TAGTTGTGAGTCCACCAGGTTTTGAAATTTACAAAGCTGATTTAATAAAG
GAAGATCAAAAAGGTTTTATCCGATTATCAAAGTAATCAATAATAATGGT
CACTGAACACCTTCAATCATTATTGATTACTTCGATCACAATCGAATGTT
CGATTAGTACTGTCTGGTTTTATACGAGGTTGGATTGTAGTCTGGAGAGC
CATACTCTCTATTCAAACTTACACCACATAAGTAAAAATCCCATCAGAAG
TAACCTGAGATCAGATTGTGAATGTTTTCTGCACACCACGCTGAAGCTCT
AAAGGGATGTGTGAAAACAAACAATCTGACGAATATGCAATCTCGAAATC
GTAAGGACCGCGTTCGTCTAAAAGGACTGGGAATGACAACAAAGTTGCGC
GATTGTCTTTATGAATAGGGCGCCGTATTAGTTTTTATTTTTCCGGCGCA
CAACAAGATTCTTGTTGTAGAATTTTCTGCGGGAGGACTATTTTCCTCAG
ATGTATAATTTTCAAGTGCCTTTAGAGGTTTACCGTGCGCGTAAGAAAAT
TATGAACATCTGTTATCAGGTTAATCAGAAGCTACTTGGCTTGAATTTCG
TGCCAAAAAAGCTGTTGATAAAGTTAGCCAATCGGGGTTGCGCAACGACC
CTCGACATGGCCCGAGAATTCTCGGGCCAAAACTTTTATTGGAATGCGCA
TAAAGCCTGAGGATGGCCCGAGTTTTCGGGCCGCGGGCGGGCCTCACGCG
GGCTAACTTTTGAAATCATGATTTAAACCCGCGTGTAATTTCAGGACTGC
ATTAAACTGGTCCTGGTTTTAAACTTTTTGAAGCGTGGTCCACGAGGAGT
TTGTTTAGTTTATTTAGCAAGATGAACTGGATGAAACGCGACGAAATAAA
TTAAAATTAACATTTTCACACATTTTCAACGTCATTTTCACGTTTAATTT
CATTATGACTGGACAAGCTGGATTAATCAATGGAATCTTCTGACACAGGC
ACAAAGGTATATGTTGAACAGTTTACGTCTTAAGTCGTAGCTTTGGGCCA
AAAGAATTGATAGGGTCTCTCGGCCCGAACATGGCCCGAAGAGGCCCGAG
AATTCTCAGGCCATGTTGAGGGTCGTGTCTCGCACTTCAAATCAAAACAA
TAATATCACGTGATTTCAACAATTGTTTGTAACAGCCAATATAATTCTGT
GACCAGATTTAGCATCTACAAAAATACCCGGGTACTCTGTTGTTTCTGTA
TTATTCAAACTGAGCAAAAAAATGTATTACACCAAAGTCCCAACTTCCCT
AGATCAAAAGTTATGGGCCTATTTTTGTGGTCAAAAACTGATGGAAAACA
GGGAATTTCCCCACAATCTGCATTAATTTATGCAAAATTAAACACCTTTT
TGGCCACAAATAGGCCGATAACTTTTGATCTAGAGAAGTTGGGACTTTGG
TGTAATACATTTTTTTGCTCAGTCTGAAGAGCTCTATCGTGTGATATAGG
TCTTTTTTGGACCTACCTCCGGGTGCCCCGGTGGAGGTCCTATAAATTAA
CCCATGTCCGTTCGTTGGTCCATCCGTCCGTCTGTTACCAGCTTTTCTCA
GGATTGGCTCATTAGTTTTTTTTGATTTTTGGCACAATGATGCAAAATGG
TAATGCCCAAAATGTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGATTTC
ATCATTAGTTTTTTCTGATTTTTTGCACAAAGATGCGTATTAGCAATGCT
CAAAACTTGGCCGAGTCCGATTTTTGAGAAAAATTCTTTTCCGGCGGAAA
ATGCCTGAAATATGCCGGAAATCGCCGTTTTCTGGGTTTTCATTGGCTTT
TTCCTTTTAAATGGTTGTTTTTTTCATTCAAACACATTATTAATAGCAAT
GCCCACCATCAAGCATGTTTCAATTTTCAATAAAATTGAATTTTGAACCC
GGAACTATTTAAAAATCTCCGGAACAACCTATTTTCGCTGGAAAGACAGT
ATTTTTTGAATTTCTCAAGCTGTACTTTATATTTTTTTATGAGACATTTC
ACACCGATGCAAAATGACAATACCTAAAATGCGACGGAACTTGATTTTCG
AAAAACATTTTTTTCCGGCCGAAAATGCCGGAAATATGCCGGAAAAACCG
GTTTTTTGACATTTCCTCAAATTTTTATCCTTAGTTTTTTCTGATTTTTT
GCAGAGAGATGCGTATTCGCAATGCTCAAAACATGGCCGAGCTCGATTTT
TGAGAAAAATTTCTTCTGGTGGAAAATGCCGGAAATCACCGTTTTTGCAG
ATTTTCATTGGATTTTTTCCTTATATTTCCAATTTTTTTCACACAAAAAC
ATTATTGATAACAATGCTCACCATCAAGCATGATTTAATTGTCAATAAAA
CTGATTTTGCGACCAGAACTTTCGATTTATTGTTTCCTTACAACCCTTTC
CTCTCCCCCCATCAACAATCAATGATGAATTTTTGCGTTATGCATTTTCG
CTAAACGCTATATTTTCTGACTGATTTTTTTCATTTTTCTCCTCGCATTG
CTATCTAACTTTCATCATCAGGTAGGTCCATTCAGCATCTAGCTTGTTTA
ATTTGAAGACCCCCCAAAGATCATGAATTTCAAGGCCTTGCAATTTTGCC
TGGAAACGCCAAAAATCGCCAATTACTTGTTACTTGCACGATAATATCGT
GGAAACTTTTTGATTTTTGATTTTGGAATCTACATATACTAATTCGTGAG
TTTCCACCAAAAAAAGTTAGTTCTAAGATGTGTGTCACGAAAATTGTTTT
CTATCCACTTTTTTCGATCTCAGCAGCAGGACTAAACAAATTTTTGTGGA
ATTTGATTTGCCTTTTGTAAAATCAACTTTTGTAAAACTTCCAAATTTAG
AAGTAATACTTTGTAATACACCTTGACGCACTTTGTGATAAAAACTGATA
CACTTTGTAATTATTAAAAAAATTTATAAAAGCCTGGTAAATTGCACAAA
GTGTGGCGTTATTACAAAGTGCCTTAGTACAACATTTTACTATTACAGTA
ACCAAACAGCTGCATTTGATAGTTTGAGGGGAAAGAAATTTCAGAGACAG
ATTTTAGCGATACAAAAGTAAGATTTAGAATGGCAACATTCCCCACTTGG
AGGTAGACAAAATTTCTCATTCCTGGTTTATTAAGCTCTAGGGATTCTCA
CTTCTTGATGGAATCAGCCTGGAAAAAATGTATCACTACACTATTAAGGG
AACTTGTTTTGGCAAGTTTGGACAAAATTTGCCAAAATTAGTTCAGATTA
TTTAATATATTTAAGGTTCAACCAATAGCAAAACAAATTAATCTGTCACA
ATGGTCAAACGAAAGGTTTCAACGAATGGTGATGTCAAAGGCTCAAAGAA
AACAAAAAATGAGAAGCCTGGAATGGGAAAACTTCAAGTTACAACTCCTG
GAGAGACTTTTGGATCTTTGCTGGGCAAAGTTTCCATTGAAACTTTCATG
AAAGAAAACTGGGAACAGAAATTCCTGCATATTAAACGTGAAGATCAAGG
TAACTGTTTACTCTCAGGCTCCTATAACCCCAATTAAAAGAGGCTGCAAA
TTTTTCAAATACACATAATCAAGATGATAATATGTAATAATTCAAGATTC
CTCTCATCTGTTATTTCAACAAGATAAAACTAGTTTTTTCTTCTGCAATG
ACAGTTTTAAATCTTAAAATGTTTATATTTCAGAATATTATGGCAGTTTG
TTCTCACTGGAGGGCCTCAAAGAAATTGTAGAGGAAGAGGAATTGTTCTT
TGAGCGCGATATCAACTGCTGTCGCTATGTTGATGGGGAAAAAGAACTAT
TAAATGAAGGAGAAGAAATTTCACTTAAAGATTTAAACGAACTTCTAGAC
AAGAAGAAAGCAACCTTACAGTTTCATCAGCCACAGCGATTTGAGGTAAC
CTGAGACAAACCCTGAACATAAATTGTTTGAAGGACGTTATCTTGAAACA
AACGAAACATTATTTTCCAATGGGGTTGTCCTTGACAATAAAGGAGAGGT
ACTTCAAACCAAAACATACTCAATCAGACTAAATCTTACTTTTTGAATGC
CCCCAAATGTGAATGTTTGTAAGATACTTTTATTTCTCTATTAGGATGGT
CTATGGAACCTCATGGAGAAATTAGAAACTCATTTCAATTCACTGGTCGG
AGCTAATGTTTATATCACACCCGCAGAATCACAAGGATTGGCTCCTCACT
GTGATGACGTTGAGGTACTGTTTTGATTTTAAAGCTCCAGCTGGCTCTAG
TGATACAGAAAAGTCTCTTACATAAAATTTGACAAATGCATCAAAAACAA
TTTGTTGTGTTTGCAAATTACTAAAAACAGACTGTTCAATCTATAATAGT
AACAATTGGTGCTGTAGTTACTATATATCTAAATTTTGTATCTCATTCTC
ACTTTAAAAGCCTTTTCTCCTGAGCAATGATGATTCAGTAAAAGGTATGA
TCAGAATTTGATGGCAGTTCTCTTTCTCGGTTTTGGCATCAAGTTTTAGC
CAAAACCATTTTTGCAACCTGACATTAAATTGTCTGTATATGGATTGGGT
TATGTAAAGTCAACAAACCCAGCAAAGGGCAGACAAATATTTCAACACTA
CAAAAGGTTTGCAAAGAAAAGAGATTTTGCCTCAAATCTGGACATGACTA
CATCGTGCAAGCTGAGCTCAGGATAGTCAAATATGTTCTATTTTAACAAG
TGATGTAGTAGGTTTCAGTGATAGACTAGTAATATAATCCTTTTTGGACC
TACCCCAGTGGGGTGGAGGTCCTATGAATTAACCTGTGTTTGTTTGTTCG
TCTGTTACCAACTTTTCTCCGGATTGAATCATAGGAATCTTTTGATTTTT
GGTACAACGGTGCAAAATGGTGTTGGCCAAAATGTGACGGAGCCCGATTT
TCGAGAAAAAAAAATTGGGGGGCAAATTTTGGCCTAAAAACAGCTAAAAA
ACAGGTTTTTTGGACTTTGTGAAAAATTGGATCATTAATTTTTTCTGATT
TTTTGCATGAAAGTAGGGTACCATCATAGGTAAAAGATGGCTCATGCAGA
TTTTTGAAAAAATAATTTGTTGGCTCAAAAAATGCATGTTTATCTATAAG
AATCACTATTAATAAGCATACATCAATGTTCTTAGCCATATTATTTTTAT
TAGTTTTTTGGACCTACCTTGGAGGTCCTATAAATTAACCGATGTCCGTT
CGTCCGTTCTACCATCTTTTCTCAGGATTGACTCATTAGTTTTTTCAAAT
TTTTGGCACAATGATGCAAAATGGCAATGCCCAAAATGTTGATATGCTGG
AAAAACTGTTTTTTGGCATTTTCTCGAGATTTTATCATTAGTTTTTCCTG
ATTATTTGCTCAAAGATGCGTATTAACAATGCCAAAAACATGGCTGAGTC
CGATTTTTGAGAAAAAAAATTCCGGCTTAAAATGCCGGAAATCACCGTTT
TTCTGGATTTTCATTGGACTTTTTCCTTATAACTGGTTGTTTTTTCATTC
AAAAACGTTAATAATAGCAATGCCCACCATCAGGCATGTTTTTCATTTTT
GAAGCCGGAACTATTTAAAAATCGCTGGAAAGACAGTATTTCTTGAATTT
CTCAAGCTGTACTTTATATTTTTTATGAAATTTTGCACACTGATGCAAAA
TGACAATATCTAAAATGTGACGAAGCCCGATTTTCGAAAAACATTTTTTC
TTGTCGAAAATGCCGGAAATATGCCGGAAAAACCGTTTTTTGGCATTTCC
TCGAGATTTGATCATTAGTTTTTTCTGATTTTTTGCACAAAGATGCGTAA
TAGCAATGCCCAAAACATGGCCGAGTTCGATTTTGGAGAAAAATTCTTTT
CTGGCCGAAAATGCCAGAAATATACCGGAAATCTCCGTTTTTGCAGATTT
TCATTGGACTTTTTCCTGATATTTCTTTGTTTTTTCACGCAAAATCATTA
TTGATAACAATGCCAACCATCAAGTATGGTTCAATTGTCAATTTTCAACT
GTCAACTTTCTAAAAATCGCCAGAACAGCCGAATATTGCCAGAAAAACAG
TTTTTCTTGAATTTCTCGAGCTGTACTTTATATTTTTTCATGAAATTTTG
CACACTGATGCAAAATGCCAATACCTAAAATGTGACGGAGCCTGATTTTG
GAGAAAAAAATATTTCTGCCAAAAATGCTGATAATATGCCGTCAAAACCG
GTATGTTGCCATTTTGTCAAGATTTCATTAATAGTTTTTCCCAATTTTTG
CACAAAGATGTGTATCAGCAATGCCCTAAGTGTGGTCGTTTTTGCAGATT
TGAATTGGGCTTTTTCCATATATTTCTTTGTTTTTTCACTTAAAAAAATT
ATTGATAACAATGCCACCATCAAGCATGATTCAAATCGTCAATAAAACTT
TTGCAATTTTGCAACCGGAACAGGGGGGGGTCAGTGTACTAGAAGATGGC
ATGTATGTGTACTACAAGGTATTTTTCAGAACTTGACACCCACCCACCCC
TGAAGTACACCATACTACATGGAAAAATTCCAAAACCACCCCATACCCCC
TATTTACTACCGGGTAGTACCTGGAAAAAAAATAAAACCACCCCATACCC
CCCATTTACTACCGGTTACTTCCTGGAAAAATTCAGAAAATAGAGAAACT
TTTTTCCGTAAGTCGGAAAATTGGGTAAACATTTTTCCAAAAATCGGGAA
ATCAGGAATCTTTTTTTTCGGAAAATCGGGAAATTGGGAAAACTTTTTTC
CAAAAATCAGAAAAACAGGAAAATTTTTCTCAAAAATCCAAAATGCGTGA
GAAATCAAACTTTTCAAAAATTACGTGAAACCAAGTGGAAATGCATGAGT
CTCACAACCAATGCGTGAGAGTTGNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCTGACCGGAA
CTTTCTATTTCTTTTTCTGGAAACACCTCCCCCCCCCCATCAACAATCAA
TGATGAAATTTAATGCATTTTCGCTAACCACTATATTTTCTTAATGATTG
TTTTTCTCTTTATTGCTATCTAAGTTTCATCATCAGGTAGGTTCATTCAG
CATGTTGCTTTCATTTTTCTTTATTTTTTTTGTATTTTGGTCAGTTATGT
CTTATGTGTTTCATTGTTTAATGTTCATTGATTAGTTTGATAACCAGGTA
GGTCCATAAAAGTATCACTTGTTATGTTTAGATTTTTGTGTTGCAATTAG
AAGGCAAAAAGACTTGGAAATTGTATGAACCACATGTCAAACTATCTCGT
GACTACACTCAAGACCTTCTTCAGGATGCTATTGGTGAACCTATTTACGA
ATGTACTCTAGAAGTAAGGATTTGAGAATCTTTTTTGGACCTACCCCGGT
GGGGTGGAGGTCCTATAAATTAACCTGTGTTCGTTAGTTAGTTAGTTAGT
TAGTACGTTAGTTACCAACTTTTCTCGAGATTGGCTCATTCAATTTTTCT
GATTTTTTGCACAAAGGTGCATTACTATAAACCCTCGAATGTGACGGNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNGTTAAACATCGATGCGTTTCTTAATTGCTTTCTCCGTTCCAATAGATA
TATAAATCGAAATTTAAAATTATACATTACTTCCATTAAATTCTAATTAT
TGGTTTTATAAATAGGTAGGTCCATTAAAGTATTACTTGTTTTTTGTGGG
TTAATTAAGCCCTTTCAGGGTTATTCAAGATTTCCAATAACAAATGTTTT
TAAAGCTAACAATATGGTTTGAAGATTCAATTAGACAATTAACTTTGGAC
TTCTTTTTCCATAGCCTGGAGACATGTTATACTTTCCACGTGGAACTATC
CACCAAGCAAAAACTTTTGGGGATAGTCATTCTACACACATTTCAATGTC
GACCTTCCAAAACCAGTAAGTCCATTAATTAGGGAGCATACTTCTTATTC
CACTGTTTTAAAATGGTGACCTGAAGGCTCTTTTGATATCTGCTCACCAA
AAGGTAGGTGGGATGCTCTATCTTCATGTTACGGCTACTACTTTATGCGT
ACAAGCTTTTGCGAATGTAAATGTCTTTGAAAATTAAATTTTAATGTCCT
TATTCGTGAAAGTTTATGCTTGAAAAAAGGTTTTTTCGTCGAATTCGCGA
AAGTAAATGTCGTAAATTTCGCGACTTTTCGACCTCGTGAAAGTTTGTAC
GTCTAAAAGTAAGGTTTATTATTTCAGAGCAGGTTTGTTCAAAATAAACT
GAACAGTTAAATTTCAATCTATTCCATACATCTAAAGGAAAAGGTAATGC
TGTTATTCTATTCNCAAAATAAACTGAACAGTTAAATTTCAATCTATTCC
ATACATCTGAAGGAAAAGGTAATGTTGTTATTCTATTTTTAATCTCTTTC
CAGTTGTGTGGGTGATTTTATGGATCACGCAGTTCGTATGGCAATCGAGA
ATGCTATGGAAGATGACGTCACTTTTAGACAGGGTCTCCCATTAAACTAT
CGTAACTTTCTTGGCACTCAAAGAGACATGAGTAAATACGTTGAGGATGA
TAAAGAAGATAAAATGTCAAACGAAAAAGATACAGAAGTTATGAAATTCA
AAAAGAGGATCAAGGATTATTTGTCGAAATTAGTTGATCACATTGATGTC
AATAAGGCTGCTGATGCAATGTCATCTGACTTTATCGGAAGTCGACTACC
TCCCTTTGGCCATGCTCCTCCAGAAGGTATATTTTTTGGGATATCACCTC
GCGTGTATCTACGTCACAAACTTAAAACCTTTCCAATTTGTAATATCATT
GAGAATAACACAGCATTAATAGTACACTTCAGTTACTGAACCTTATACTG
AAACTAGTTTTCATAGAAAACACCTTTTTCCATGAATGACGAAATGAAGG
GTACGTTTTTTGTAAAAATGATTTCCTGAAGAACGTCGACTTCCCCTTTC
CCCTTTTGAGATTTGCAGAGATCAAGTCAGTATCTTATTTTTACAATAGG
CGCTAACAAAAAGAGGCTTATTAGTCAGCCCCGGTGACTCTTCAAATCGG
TTCGACGATTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCTCAGATTTTAACAAAG
CCAGATTTCTTATCTGTACTTCCTATTAATCATTCTAAGCCTTCTAAGCA
TTTTGGGCTGACTTTCCAGCGCAGCTGGTTTATTTGAAGTTCTCTTTTTA
GGCTATTGCTATTGTCACGTCATTCTCTCTCCTTAGTTGATGAAAATGAA
GCTGAACCACCCACCTTGGATTGTCAAATCAAGATGCGATACCCTGAACA
CGTTCGAGTGATGTATCTAGATGAAGACACAGAAGATGATGAAGACGATG
AACTCGAAATTGTAGAAGTGAGTAAAATAGAAAAATAATGCCTCTCTAAG
GTTGGTTCCCGCAAAATCTCATTCCTGAGGTAACTCTTCAGTAAGTCTAG
AGCAAGAATCTAACATGGTTTGAAACCCGTAGAAAAACCAGGGGACTAGA
TGTAGTTAGGTCTTTGTTATATTTGCACTTCTTTGAAACAATTTTCGGTT
TTTGGGATAATATACACCAGCTTCATTAGGCCACCAAGTAGTTCATAAGA
TATATCAAAGCTGAGCCCAGAGTAACTCGTATGCTCTTCTTCTATATCGC
AAAACATTTTAACTGTGGTCTACATTTCTTTCACCTCGTGACAAATTGTA
GACTAATGAAAGCACAAACAAGACTCACTGGAAATTGGTGCAAGCTCCTC
TCACAAAAATAGAAATTAGGTTTGATAGTTTTCGTATCTAAAAACCAAAG
AGCAAAAGGAAATCATTTATGATAAAACTATTCTTCTTTTATAAGGATGA
CGAGCAAGGTGACGAAAGTATGGAGCAAGAAGAAGAAGAAAAGAAACCTG
CTAAGGGTGCAAAGAAAAATGGCAAAGAAGAAAAGGTTTGTTCAAATACG
ATTACGAATACGCGCTATTTAAAGTTTTGAATTTGAAAGCACTTAAAATT
CTTACGCGGGAAAATGATATGATGATGATACTTTCTACTGAAATTTACTG
CAAATACTACGAAGGCGTGTAGGATTGATAAATATTGAAAGCTAGTGTTT
CTTCTCAAAAGTTATCGTCTTTATTAGTTGATAATTGCCAAAATGATTCA
CTGCATTTGCGCGTACTGTAAGAATTGATAGAAAATACAAATTAATAAGA
GCGTCTTGTTATCGTGCCTGTTAGGACGAGAAACCTAGCGATGAGAAAAC
GTCATCAGCCAAGAAGACAAAAGAGAAACGCCGTTCAAAGACCGCCAGTG
AAGTTGAAGATGACGAGGATAATGATCAAGATGCAGAAATGACTGAAACC
GAATACCCCTGCATTGCTTTTGTACACTCGCTCAATAATGAACGTGATGC
TCACATGTGTGGACCTCAGCCTAAGATGGACGTAAGTATTCTGTTTGTCT
ACCTTCGTAGGTGCCCTCCAGTGCATGGCCCCCGTCACCGCAATATTTTG
CAAAGTAATTTTTTTTACTTTAAAAAATCTTATATATACCGTTGAGAGGG
GTGAAATAAGGGTAAAAAGTCGAAAATTTTCTTTGTCGCCCAACCGTGGT
GGGCAACATATTTTTTGGCCCCTCAATTCGATTCGCACGCCGGGGGCCAT
GCAGTGGTTTGCGTGAATGCATGAATAGACTTTTTCACTTGTGTGAATGC
GTTTATACACTTCCTTTAAATGTGTCACTCTGAAAAGTTAAAGAGGGTAG
GGGATAATTGGCCCTTCCAGAGAAAAGGTACGTTACGTCACGCTGATATT
TAAATGGTTATCGCCAGTAAGGACCTTGGAACACCACGACCCATGCACCA
TCTGCCTCCATTCTCGGAATGGTCCTAATGTAGATACCCAGTTCGATATT
TTGTTGTCCCTACCAGAATCCCTCTCTGTTACATTCTATTGTACATGACT
TACCCATTCCGCAATGAATATTTCGAAGCGCAGGCCCAATAACTAATTTT
TTTCGTTTTCGCTCTTTCTAGCCCTCCATGATCAAGCTTCCAGTTCACTT
TGCACGTGCAGCCAACTTCATCTTAAACGCCAAAGATTTCGTCAAAGTAA
AAGATATTCCCGATTTGGAAGAAGACAACGAAAAGCTCCTCCTCGCTACC
AGCTTGTTCGCTGATGACATCATCGAGATGAAATTTTAAGACCGTTGATT
ACTAGATATGATAGAACATTATGNTCCTCGCTACCAGCTTGTTCGCTGAT
GACATCATCGAGATGAAATTTTAAGACCGTTGATTACAAGATATGATAGA
ACATTATGATATCTGAACTTTCGTTTTGACAAAAACTAAAAAAGAAAATC
ACATTTGTGAACAAAAAGAAGATCGTTTCTTTTATATTATTTACACACAA
ACATGTACATTTTTTATGTTTTCTACACAAAAAGATACCGAAATTAGAAA
CTTTTCTTTGAAAGTTGTGCAAGTGATTTTTATCTTTGTTTGGACCCTGT
AAAGTTAGCCTTTTAGCCTAAAAAGTACCATTTCAAAAATAAAGCAAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029323XLOC_029323Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045897-exon-scaffold_102-1575043694:364820..364821TCONS_00045897-exon-scaffold_102-1575043694:364820..364821Clytia hemisphaericaexon
TCONS_00045897-exon-scaffold_102-1575043694:361023..361256TCONS_00045897-exon-scaffold_102-1575043694:361023..361256Clytia hemisphaericaexon
TCONS_00045897-exon-scaffold_102-1575043694:360627..360838TCONS_00045897-exon-scaffold_102-1575043694:360627..360838Clytia hemisphaericaexon
TCONS_00045897-exon-scaffold_102-1575043694:360308..360427TCONS_00045897-exon-scaffold_102-1575043694:360308..360427Clytia hemisphaericaexon
TCONS_00045897-exon-scaffold_102-1575043694:356809..356940TCONS_00045897-exon-scaffold_102-1575043694:356809..356940Clytia hemisphaericaexon
TCONS_00045897-exon-scaffold_102-1575043694:355507..355607TCONS_00045897-exon-scaffold_102-1575043694:355507..355607Clytia hemisphaericaexon
TCONS_00045897-exon-scaffold_102-1575043694:354696..355018TCONS_00045897-exon-scaffold_102-1575043694:354696..355018Clytia hemisphaericaexon
TCONS_00045897-exon-scaffold_102-1575043694:353105..353235TCONS_00045897-exon-scaffold_102-1575043694:353105..353235Clytia hemisphaericaexon
TCONS_00045897-exon-scaffold_102-1575043694:352537..352626TCONS_00045897-exon-scaffold_102-1575043694:352537..352626Clytia hemisphaericaexon
TCONS_00045897-exon-scaffold_102-1575043694:352041..352247TCONS_00045897-exon-scaffold_102-1575043694:352041..352247Clytia hemisphaericaexon
TCONS_00045897-exon-scaffold_102-1575043694:350923..351450TCONS_00045897-exon-scaffold_102-1575043694:350923..351450Clytia hemisphaericaexon
TCONS_00045897-exon-scaffold_102-1510915933:364820..364821TCONS_00045897-exon-scaffold_102-1510915933:364820..364821Clytia hemisphaericaexon
TCONS_00045897-exon-scaffold_102-1510915933:361023..361256TCONS_00045897-exon-scaffold_102-1510915933:361023..361256Clytia hemisphaericaexon
TCONS_00045897-exon-scaffold_102-1510915933:360627..360838TCONS_00045897-exon-scaffold_102-1510915933:360627..360838Clytia hemisphaericaexon
TCONS_00045897-exon-scaffold_102-1510915933:360308..360427TCONS_00045897-exon-scaffold_102-1510915933:360308..360427Clytia hemisphaericaexon
TCONS_00045897-exon-scaffold_102-1510915933:356809..356940TCONS_00045897-exon-scaffold_102-1510915933:356809..356940Clytia hemisphaericaexon
TCONS_00045897-exon-scaffold_102-1510915933:355507..355607TCONS_00045897-exon-scaffold_102-1510915933:355507..355607Clytia hemisphaericaexon
TCONS_00045897-exon-scaffold_102-1510915933:354696..355018TCONS_00045897-exon-scaffold_102-1510915933:354696..355018Clytia hemisphaericaexon
TCONS_00045897-exon-scaffold_102-1510915933:353105..353235TCONS_00045897-exon-scaffold_102-1510915933:353105..353235Clytia hemisphaericaexon
TCONS_00045897-exon-scaffold_102-1510915933:352537..352626TCONS_00045897-exon-scaffold_102-1510915933:352537..352626Clytia hemisphaericaexon
TCONS_00045897-exon-scaffold_102-1510915933:352041..352247TCONS_00045897-exon-scaffold_102-1510915933:352041..352247Clytia hemisphaericaexon
TCONS_00045897-exon-scaffold_102-1510915933:350923..351450TCONS_00045897-exon-scaffold_102-1510915933:350923..351450Clytia hemisphaericaexon
TCONS_00045897-exon-scaffold_102-1491911889:364820..364821TCONS_00045897-exon-scaffold_102-1491911889:364820..364821Clytia hemisphaericaexon
TCONS_00045897-exon-scaffold_102-1491911889:361023..361256TCONS_00045897-exon-scaffold_102-1491911889:361023..361256Clytia hemisphaericaexon
TCONS_00045897-exon-scaffold_102-1491911889:360627..360838TCONS_00045897-exon-scaffold_102-1491911889:360627..360838Clytia hemisphaericaexon
TCONS_00045897-exon-scaffold_102-1491911889:360308..360427TCONS_00045897-exon-scaffold_102-1491911889:360308..360427Clytia hemisphaericaexon
TCONS_00045897-exon-scaffold_102-1491911889:356809..356940TCONS_00045897-exon-scaffold_102-1491911889:356809..356940Clytia hemisphaericaexon
TCONS_00045897-exon-scaffold_102-1491911889:355507..355607TCONS_00045897-exon-scaffold_102-1491911889:355507..355607Clytia hemisphaericaexon
TCONS_00045897-exon-scaffold_102-1491911889:354696..355018TCONS_00045897-exon-scaffold_102-1491911889:354696..355018Clytia hemisphaericaexon
TCONS_00045897-exon-scaffold_102-1491911889:353105..353235TCONS_00045897-exon-scaffold_102-1491911889:353105..353235Clytia hemisphaericaexon
TCONS_00045897-exon-scaffold_102-1491911889:352537..352626TCONS_00045897-exon-scaffold_102-1491911889:352537..352626Clytia hemisphaericaexon
TCONS_00045897-exon-scaffold_102-1491911889:352041..352247TCONS_00045897-exon-scaffold_102-1491911889:352041..352247Clytia hemisphaericaexon
TCONS_00045897-exon-scaffold_102-1491911889:350923..351450TCONS_00045897-exon-scaffold_102-1491911889:350923..351450Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_102supercontigscaffold_102:350923..364821 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1240.84	1217.66	1480.08	1392.25	46.0521	32.6765	60.2657	65.9816	110.302	100.911	113.736	123.148	163.124	148.641	154.221	178.387	165.234	164.992	16.5961	20.2419	127.242	125.756	659.569	553.957	130.993	168.866	83.6085	74.4646	362.757	410.821
Blast
[Close]
BLAST of TCONS_00045897 vs. Swiss-Prot (Human)
Match: RIOX2 (Ribosomal oxygenase 2 OS=Homo sapiens GN=RIOX2 PE=1 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 1.990e-79
Identity = 162/399 (40.60%), Postives = 232/399 (58.15%), Query Frame = 2 
Query:   44 KRKVSTNGDVKGSKKTKNEK----PGMGKLQVTTPGETFGSLLGKVSIETFMKENWEQKFLHIKRED---QEYYGSLFSXXXXXXXXXXXXXXXXRDINCCRYVDGEKELLNEGEEISXXXXXXXXXXXXATLQFHQPQRFEDGLWNLMEKLETHFNSLVGANVYITPAESQGLAPHCDDVEIFVLQLEGKKTWKLYEPHVKLSRDYTQDLLQDAIGEPIYECTLEPGDMLYFPRGTIHQAKT-FGDSHSTHISMSTFQNHCVGDFMDHAVRMAIENAMEDDVTFRQGLPLNYRNFLGTQRDMSKYVEDDKEDKMSNEKDTEVMKFKKRIKDYLSKLVDHIDVNK--AADAMSSDFIGSRLPPFGHA-PPEVDENEAEPPTLDCQIKMRYPEHVRVMYL 1207
            K K + +G  +G    K  K     G   L   +P   F SL+  +  ETF KE WEQK L I+R+D     YYGSLF L  LK +      +  RD+N CR V+G+K++LN+  +     L +  D+K+AT+QFHQPQRF+D LW + EKLE +F SLVG+NVYITPA SQGL PH DDVE+F+LQLEG+K W+LY P V L+R+Y+ +  ++ IG P++E  L+PGD+LYFPRGTIHQA T  G +HSTH+++ST+QN+  GDF+   +   + +  ++DV  R G+P          R +   VE            T V    +R+  +L  L D ++  K   +  M  DFI  RLPP+      E+     + P LD  +++++ +H+ +  L
Sbjct:    4 KAKPTGSGKEEGPAPCKQMKLEAAGGPSALNFDSPSSLFESLISPIKTETFFKEFWEQKPLLIQRDDPALATYYGSLFKLTDLKSLCSRGMYYG-RDVNVCRCVNGKKKVLNKDGKAHFLQLRKDFDQKRATIQFHQPQRFKDELWRIQEKLECYFGSLVGSNVYITPAGSQGLPPHYDDVEVFILQLEGEKHWRLYHPTVPLAREYSVEA-EERIGRPVHEFMLKPGDLLYFPRGTIHQADTPAGLAHSTHVTISTYQNNSWGDFLLDTISGLVFDTAKEDVELRTGIP----------RQLLLQVES-----------TTVAT--RRLSGFLRTLADRLEGTKELLSSDMKKDFIMHRLPPYSAGDGAELSTPGGKLPRLDSVVRLQFKDHIVLTVL 377
The following BLAST results are available for this feature:
BLAST of TCONS_00045897 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RIOX21.990e-7940.60Ribosomal oxygenase 2 OS=Homo sapiens GN=RIOX2 PE=... [more]
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