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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045880 ID=TCONS_00045880|Name=TCONS_00045880|organism=Clytia hemisphaerica|type=transcript|length=1289bp
atgatatgcacaactgcaatgtcttctgacattacatcacggacccaaca
gctgactggttgtaagtgacgtaaaatcagtcaatatgtcacttgcaacc
aaccatcagctgttgggtctgtgtAGGGCATTGAAATGGTGTATAACATG
GATTCGCCAGCTTCCTACCCTCCTTACCCTGCAAAGTATACTAAAGTTTA
TTTGACAATTATATGAATCAAGTCTGTAATGAAAATCTTTGCTTTGACCA
CGTTTAATATTTGTGACATTTTATTCTTTCCTAGTTGAAAGCATGTCGTA
TCATTTTGATGGAGTTACGCAAAGAGAAAGATGCTTCACATTTCCAGAAT
CCAGTTAGCCGTCGACAGTTTCCAACTTACTATGGCATCATCACCAACCC
CATGAACCTCTCCAACATTATGCGCAAGCTCGATGGCTTACAATACGATA
ACGTNcgatcggaaatttgatactgattaattttgagatacaaagttggg
tctgaaaactttcctatctcgagatataaatcactttcgttttctcaggt
ttggtTGCAGTTGTAGGGNGATAACGTCATGTCGTTCATTGATGACGTCA
ATCTCATCTTTGAAAACTGTGAAAAGTTCTACAAGGAGACGGACAACGAA
GTCAAAGAATGCGGAGCTCGTCTTAAGAAGAAATTCACAGAATTATTGAC
ACATCATTTGCCTGGTATTGCCTCCTAAACGAGGAGAgtctttttttcat
ctttaagtGAGATATTTGCTAATCAAAGTGCTGGTATATTATACTCTGGC
TTCCCTAATTCCCACAAGTTTTCAATTCCTATCTTCTCTTGTCAACTCAG
TCACTgaagtccattcgctttaagtgaGCATGTAGAAACCACGTCAGTGT
AATTAGAGTAATTCCCTTGAGGGTGGTTTTCACCTTGTAGCAAAAAagtg
cacacttaaagtgaATAGACCTTAGTACCAAGTCCCACCTTTCCCAATTT
TCAACCCAGAGCAACATCCATTAAGGCCCCACGCATCTTTCTTGGCAAGA
CTTTCGACTCTCCTTTTTGCTTGATGTGGAAGTCTTTGGGTGGCAAATTC
ATATTCAAGACCTGCCTTTTTTTTACTGCTGCCCTTATTTTTATTATTCT
GTAGTATATAATATTCTTCAGTGttccattattttatttttggcaaACAG
TGCgtcttcattttttaactatCCTTATTATTTTGTGTATATTACGGTGG
ATTTCATATTAGAATATATTATATTAGATAAGAAACAAA Run BLAST on NCBI transcript from alignment at scaffold_102:241415..245155- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045880 ID=TCONS_00045880|Name=TCONS_00045880|organism=Clytia hemisphaerica|type=transcript|length=3741bp|location=Sequence derived from alignment at scaffold_102:241415..245155- (Clytia hemisphaerica)
ATGATATGCACAACTGCAATGTCTTCTGACATTACATCACGGACCCAACA
GCTGACTGGTTGTAAGTGACGTAAAATCAGTCAATATGTCACTTGCAACC
AACCATCAGCTGTTGGGTCTGTGTAGGGCATTGAAATGGTGTATAACATG
GATTCGCCAGCTTCCTACCCTCCTTACCCTGCAAAGTATACTAAAGTTTA
TTTGACAATTATATGAATCAAGTCTGTAATGAAAATCTTTGCTTTGACCA
CGTTTAATATTTGTGACATTTTATTCTTTCCTAGTTGAAAGCATGTCGTA
TCATTTTGATGGAGTTACGCAAAGAGAAAGATGCTTCACATTTCCAGAAT
CCAGTTAGCCGTCGACAGGTGAGTCCGCAGAATTTTTAGAGCTATATCTG
TCATCTTTACTGTTGAGAGTACCACATTTTAAAAATACTCTTAGCCACGG
TTTTTGTTGACCAAGATTGAGAGTCTGTCTTCAGGGTTTATAAATCTCAA
TGGGCTCTTCTTTGTGTAAATTTTCCTTTTTTGAAAGTTTTATGCTTATA
TTGATACTAAAAGAACCAAAAACTTAAGTATGGATTTTAATGAAAAAGAC
CCTCATTTACCTTTTACTGTGATGATTGTTTCTTGAACATATGAATGTCG
TCTGAACGGATTATTTTTAACAAATTGCTTGAGTTACACCCAGAATGTCC
ATGATAAATATTATAGAAAATAGGGTAATTCAATCGTTTAACATAAGCAA
ATGTGAAATTTCGCACGATGATTCTATAGTACTTTATATGATTGATTCGG
AATGAATTAGTCCTCTTCTCCTAAAATTTTCGTTTACATGTGAAGAAATA
CTTTGCTCTAAATATACAATATGTCCATTGACAGACAAAATCCGTACTGG
CACTGGGGATCCTCTAGCGAATTAGGGTTCTTTAATAGTAGGGTTTTGTA
AAACCCATGTTCACTAGAAAAGCCATACTCCTAATTCATTATACGAGAGA
TAATATTTTGGGGTAAATCTTTCTTTGAATCTATTTTGAGCCATTTCAAA
ATATATCTCATAAAGAAATAAGATAGTATCTGTTTATAGCACAAAAATAC
TTCAGATGGGATGAATTTTGAAATTTTGGCACAAATAAACCTTTATCAAA
TCATCGTAAGCCCTTTCGGGCCATTTTGTCGGACCTCAATGAATGTGTTC
TTCATTTTATACCTAATACGTCACTTGCAACCNGAAGATGTTGGCTTGGT
CAAAGCTCCCAGAATTTGTGAAATGATCCGAGAGGAGTCGGGTTATGGAT
TCAATCTTCACGGAGAAAAAGGAGTTATTGGTCAATACATAAGTGCAATC
GACCCAGGTATATAACATTTTTGGACTGACAAGGATATGTAGGGGGTGAC
AAATCTTGTTTCTGAACCTTTAGGATGACTGAACTTTTTGATANATTGTA
GTGGTCCAAAGCCTGTAAAAGAAATGAGCAAATGATAATCAAAGAGACAA
ATTATTGTTTATACAAACTGATTTATAATGATTTTGTATAACAACATCCA
AAACTTTTAAAGCTTTCGGATGTTTTAAACATACTCCTATTTTCACCATT
TCCTGGGTAATTTTGCCCATTTTCCTACGAAATTGGGTGTTTTAGACTCT
GCCTAATGTTCTTAACTTGTTCTTAATATTTTGGTCATCGAAGCCTTATG
TTAGAGGAGTTTTTTTATAAAAAAACGTGTGAACTACTCCAGTCACGTCT
TCACAAAATGTTATAACCTCGATGATCATTTTTCCTTTACCACAGTTTCC
AACTTACTATGGCATCATCACCAACCCCATGAACCTCTCCAACATTATGC
GCAAGCTCGATGGCTTACAATACGATAACGTNCGATCGGAAATTTGATAC
TGATTAATTTTGAGATACAAAGTTGGGTCTGAAAACTTTCCTATCTCGAG
ATATAAATCACTTTCGTTTTCTCAGGTTTGGTTGCAGTTGTAGGGNGATA
ACGTCATGTCGTTCATTGATGACGTCAATCTCATCTTTGAAAACTGTGAA
AAGTTCTACAAGGTACTTTTATTGTTGTTGTTATTATTGTTGTTTTTTGA
TATCTTCTTATTCAAATTTTTCATTAACTCTCAGCAACAAAATTGCCTGT
ATAAAGACCCAATTTATACATAGAGTTCAAAATTCATTAGCGTAGAGTAC
AACGTACTTGAGTTCAGTTGTTTTAAGTATGTACTAAATTATTGTTTTGC
CTGCAATTTGGTNAATGTGTATTTTACAGACCAGAGTACAATTTTTTTAC
CGTCGAAAAAAGATCTTTTTCTCTCAAAATTGGTCTTTTTGTCTGAAATG
AATTAGTGAAATGATGCTTCAGGTTTAGAGCCACTCGACTCCTCATATTC
TACTCAGAGAGATACCTGGGGAATATATAAGGGCTAAATGTGTCTGGTCA
GCACTTTACAAGCATGTTTTTTTGGTAAGATTTGATCCAAAAAACGGTAA
AACTTACAAGCTATTACTCAAATATTTGACNATAAGAATACAGTCATTTT
GTATTTGGTTAATAGAAAAAAACTGCTTCCTTTGTTAGACTTGAATTTAA
ACTTTGAGGCAGAAATGTAATTTTAGCTTCAAATGTTCATTCAACTCTCA
AATTGATCATTTTCTCATGTTTGTAAAAAATTCAAGTCAGAAAAAGTAAG
AATACGTTAAGAATATTTCACCCTTAATTTGGCAACTTCTTAAGAATACC
TGATNTTGAACCTTATTCTTTAGTTTGACACATGCAAAGAATCAAGAATA
CATGTAAATCGATGTGTGTATTTTACAGACCAGAATTAAGTGCTTCTTTG
AGACTTCGGGAAGTGCTTNACCCTCATCCAAAGTACACTATTCTTATATA
AAAAAGCGTGTATGTAATTCAGAGCACTTACATTTTTGTGAAAAATAATT
TCATTGATCTCTTTTTGATTCTCTTGATTCGTGAGATACTAAAAATCCTT
CTTGTCACTACGTGTAATTCATTTGATGATGGGCTACTGAACATTTTCGT
TCTCATTATCATTTTTCGTTTTCATTATCATTTTCAGGAGACGGACAACG
AAGTCAAAGAATGCGGAGCTCGTCTTAAGAAGAAATTCACAGAATTATTG
ACACATCATTTGCCTGGTATTGCCTCCTAAACGAGGAGAGTCTTTTTTTC
ATCTTTAAGTGAGATATTTGCTAATCAAAGTGCTGGTATATTATACTCTG
GCTTCCCTAATTCCCACAAGTTTTCAATTCCTATCTTCTCTTGTCAACTC
AGTCACTGAAGTCCATTCGCTTTAAGTGAGCATGTAGAAACCACGTCAGT
GTAATTAGAGTAATTCCCTTGAGGGTGGTTTTCACCTTGTAGCAAAAAAG
TGCACACTTAAAGTGAATAGACCTTAGTACCAAGTCCCACCTTTCCCAAT
TTTCAACCCAGAGCAACATCCATTAAGGCCCCACGCATCTTTCTTGGCAA
GACTTTCGACTCTCCTTTTTGCTTGATGTGGAAGTCTTTGGGTGGCAAAT
TCATATTCAAGACCTGCCTTTTTTTTACTGCTGCCCTTATTTTTATTATT
CTGTAGTATATAATATTCTTCAGTGTTCCATTATTTTATTTTTGGCAAAC
AGTGCGTCTTCATTTTTTAACTATCCTTATTATTTTGTGTATATTACGGT
GGATTTCATATTAGAATATATTATATTAGATAAGAAACAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045880-exon-scaffold_102-1575043694:244788..245155 | TCONS_00045880-exon-scaffold_102-1575043694:244788..245155 | Clytia hemisphaerica | exon |
| TCONS_00045880-exon-scaffold_102-1575043694:243094..243360 | TCONS_00045880-exon-scaffold_102-1575043694:243094..243360 | Clytia hemisphaerica | exon |
| TCONS_00045880-exon-scaffold_102-1575043694:241415..242068 | TCONS_00045880-exon-scaffold_102-1575043694:241415..242068 | Clytia hemisphaerica | exon |
| TCONS_00045880-exon-scaffold_102-1510915933:244788..245155 | TCONS_00045880-exon-scaffold_102-1510915933:244788..245155 | Clytia hemisphaerica | exon |
| TCONS_00045880-exon-scaffold_102-1510915933:243094..243360 | TCONS_00045880-exon-scaffold_102-1510915933:243094..243360 | Clytia hemisphaerica | exon |
| TCONS_00045880-exon-scaffold_102-1510915933:241415..242068 | TCONS_00045880-exon-scaffold_102-1510915933:241415..242068 | Clytia hemisphaerica | exon |
| TCONS_00045880-exon-scaffold_102-1491911889:244788..245155 | TCONS_00045880-exon-scaffold_102-1491911889:244788..245155 | Clytia hemisphaerica | exon |
| TCONS_00045880-exon-scaffold_102-1491911889:243094..243360 | TCONS_00045880-exon-scaffold_102-1491911889:243094..243360 | Clytia hemisphaerica | exon |
| TCONS_00045880-exon-scaffold_102-1491911889:241415..242068 | TCONS_00045880-exon-scaffold_102-1491911889:241415..242068 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_102 | supercontig | scaffold_102:241415..245155 - |
Blast
The following BLAST results are available for this feature:
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