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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045872 ID=TCONS_00045872|Name=TCONS_00045872|organism=Clytia hemisphaerica|type=transcript|length=758bp
GTTATTTTCGCCTCTCTTTTCATTTTAGatataaaaaacaatccttactT
GAGCATACTCAATGGATAAGTTAAAACTGCTCACAATCATTGCATTATTC
TACTCGCTGGCTTTATTCGATATCCACCAACAACATGGCCGCCATGTTGT
CCAAGCTGTTTCTCTTGACAACATGATCAAAACattacaaaataaaatca
acgaATTGAAGCGTGAACGGTCCAGTAACAAAGATACTACAAAAGAGCCT
TCGATTGGCGGGAAAAGTGAAACGTCAGACGAAACCGCGCGGCGTGATGA
TAAAGATAAAGAAGATGAGAAAAGAGCTCAGGTGGTGGCGAAATCTAAAC
CAGTAACGATTAGAATATGTAGTCAGAATTTGTTTAAGCTGTTCATGAAA
CATATATGTCCGTTACAAATCAAAAAGAAACGACAAGAAATAGAAGATGT
GACTTTAACAAGAGAACGAGCCAGGAATTTCTTACGATCAGATACTCGTC
ACAGTGGGCGATCAAAAAGATCTTCAATCTTCGGTGGAAACGGTGTCGGT
GATATTTTCTTCATGGATGAATGTTGTACCTCAAGAGAACAAGTGACGAG
CGCTTGAACCATGGTTTAAGTGGTTTCAGAGAGAGAAACTtttagaatta
ttactttattGAAAATGTGGAAGACGAGAGAAAACTTTAATaactatttt
ggaaaatttttatttatttgttcgTTTAAGAATATTGGATTGGTATCGTC
TAAAAACC Run BLAST on NCBI protein sequence of TCONS_00045872-protein >TCONS_00045872-protein ID=TCONS_00045872-protein|Name=TCONS_00045872-protein|organism=Clytia hemisphaerica|type=polypeptide|length=181bp
MDKLKLLTIIALFYSLALFDIHQQHGRHVVQAVSLDNMIKTLQNKINELK
RERSSNKDTTKEPSIGGKSETSDETARRDDKDKEDEKRAQVVAKSKPVTI
RICSQNLFKLFMKHICPLQIKKKRQEIEDVTLTRERARNFLRSDTRHSGR
SKRSSIFGGNGVGDIFFMDECCTSREQVTSA Run BLAST on NCBI transcript from alignment at scaffold_102:152936..155344- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045872 ID=TCONS_00045872|Name=TCONS_00045872|organism=Clytia hemisphaerica|type=transcript|length=2409bp|location=Sequence derived from alignment at scaffold_102:152936..155344- (Clytia hemisphaerica)
GTTATTTTCGCCTCTCTTTTCATTTTAGATATAAAAAACAATCCTTACTT
GAGCATACTCAATGGATAAGTTAAAACTGCTCACAATCATTGCATTATTC
TACTCGCTGGCTTTATTCGATATCCACCAACAACATGGCCGCCATGTTGT
CCAAGCTGTTTCTCTTGACAACATGATCAAAACATTACAAAATAAAATCA
ACGAATTGAAGCGTGAACGGTCCAGTAACAAAGATACTACAAAAGAGCCT
TCGATTGGCGGGAAAAGTGAAACGTCAGACGAAACCGCGCGGCGTGATGA
TAAAGATAAAGAAGATGAGAAAAGAGCTCAGGTGGTGGCGAAATCTAAAC
CAGTAACGATTAGAATATGTAGTCAGAATTTGTTTAAGCTGTTCATGAAA
CATATATGTCCGTTACAAATCAAAAAGAAACGACAAGAAATAGAAGGTAA
GAAAATGATTCCCGTTCGCAGGGGTTTTCCATAGATTTATAAAGCCGGTA
GGGCTAGATTTCGTGCTTTGGCTGAAAAGTGTGTCTTTAGACCGGCGATT
GTAATTTCTTCATGCCTTGGACTGGCGAAATTTGTTCGTTTACACTCATT
AGAGAGTTTATATATGCTATTTTTCCCGCAGCCTGAACGGTTACTTTTGA
TTTGCCTTTATCCTGACTGCCTGAAGACGATGGTAGATCAGCACTTTAAA
CGTTCTTGATTTTGTGGTTTTGAGTTATTTGGCTGACAGTTAGCTCTCAA
ACTTGCACGGTGAATCTGATTTGAATTACCACGAATTATAGACAGAATCA
AATAATAAATAGAGGTTCTAATGAACGAGAGTCTACTATATTCCATTTCT
CAATGTTCCATTTCTTCATGTCATTTCAGATGTGACTTTAACAAGAGAAC
GAGCCAGGAATTTCTTACGATCAGATACTCGTCACAGTGGGCGATCAAAA
AGATCTTCAATCTTCGGTGGAAACGGTGTCGGTGATATTTTCTTCATGGA
TGAATGTTGTACCTCAAGAGGTTGTGATCTACATGAAATCAATGAATATT
GTGTCTAAATTTCCTAACCACTTGGATTACATTTTTTAGTGGAATTTCAG
AAGATCTAATGATAAGGATAAAATTTGATGAACGATTTGAAGCTTTTGGT
TTGATTGGTTTAGAATGAGGTTTTTGTTTCGGGTAGAGACTAAAGACACG
AAACGAAGACCATTGAGTTTCAAGCCCGAAGGGAGACTCCTGGATGGGAA
ATGAAACCACTTAATTTCCCATCCAGAACGCCCGCGCGTAGTTTTTACAC
AAACGCCGGATTGAAACTAAAATCTATCGCTAGATTTCAAAAAATGTAGT
CCTCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCCATCCAGAACGCCCGC
GCGTAGTTTTTACACAAACGCCGGATTGAAACTAAAATCTATCGCTAGAT
TTCAAAAAATGTAGTCCTCCAAAACAAAGGAATTGCTAGATACAATCCGT
CGGCATGATTACGGCGCGTTCTATGGGCGTTTTGGATGGGAAATAAGTAG
CTTCAATTTATCTTGCCTGAAAAGGGTTAAAGGTTTCGCCTCTAGCCCTT
CGGGCTTGAAACTCAATGACAAAGACACTTTTTTTCAGAACAAGTGACGA
GCGCTTGAACCATGGTTTAAGTGGTTTCAGAGAGAGAAACTTTTAGAATT
ATTACTTTATTGAAAATGTGGAAGACGAGAGAAAACTTTAATAACTATTT
TGGAAAATTTTTATTTATTTGTTCGTTTAAGAATATTGGATTGGTATCGT
CTAAAAACC Coding sequence (CDS) from alignment at scaffold_102:152936..155344- >TCONS_00045872 ID=TCONS_00045872|Name=TCONS_00045872|organism=Clytia hemisphaerica|type=CDS|length=1638bp|location=Sequence derived from alignment at scaffold_102:152936..155344- (Clytia hemisphaerica)
AACAAGTGACGAGCGCTTGAATGTGACTTTAACAAGAGAACGAGCCAGGA
ATTTCTTACGATCAGATACTCGTCACAGTGGGCGATCAAAAAGATCTTCA
ATCTTCGGTGGAAACGGTGTCGGTGATATTTTCTTCATGGATGAATGTTG
TACCTCAAGAGATGGATAAGTTAAAACTGCTCACAATCATTGCATTATTC
TACTCGCTGGCTTTATTCGATATCCACCAACAACATGGCCGCCATGTTGT
CCAAGCTGTTTCTCTTGACAACATGATCAAAACATTACAAAATAAAATCA
ACGAATTGAAGCGTGAACGGTCCAGTAACAAAGATACTACAAAAGAGCCT
TCGATTGGCGGGAAAAGTGAAACGTCAGACGAAACCGCGCGGCGTGATGA
TAAAGATAAAGAAGATGAGAAAAGAGCTCAGGTGGTGGCGAAATCTAAAC
CAGTAACGATTAGAATATGTAGTCAGAATTTGTTTAAGCTGTTCATGAAA
CATATATGTCCGTTACAAATCAAAAAGAAACGACAAGAAATAGAAGAACA
AGTGACGAGCGCTTGAATGTGACTTTAACAAGAGAACGAGCCAGGAATTT
CTTACGATCAGATACTCGTCACAGTGGGCGATCAAAAAGATCTTCAATCT
TCGGTGGAAACGGTGTCGGTGATATTTTCTTCATGGATGAATGTTGTACC
TCAAGAGATGGATAAGTTAAAACTGCTCACAATCATTGCATTATTCTACT
CGCTGGCTTTATTCGATATCCACCAACAACATGGCCGCCATGTTGTCCAA
GCTGTTTCTCTTGACAACATGATCAAAACATTACAAAATAAAATCAACGA
ATTGAAGCGTGAACGGTCCAGTAACAAAGATACTACAAAAGAGCCTTCGA
TTGGCGGGAAAAGTGAAACGTCAGACGAAACCGCGCGGCGTGATGATAAA
GATAAAGAAGATGAGAAAAGAGCTCAGGTGGTGGCGAAATCTAAACCAGT
AACGATTAGAATATGTAGTCAGAATTTGTTTAAGCTGTTCATGAAACATA
TATGTCCGTTACAAATCAAAAAGAAACGACAAGAAATAGAAGAACAAGTG
ACGAGCGCTTGAATGTGACTTTAACAAGAGAACGAGCCAGGAATTTCTTA
CGATCAGATACTCGTCACAGTGGGCGATCAAAAAGATCTTCAATCTTCGG
TGGAAACGGTGTCGGTGATATTTTCTTCATGGATGAATGTTGTACCTCAA
GAGATGGATAAGTTAAAACTGCTCACAATCATTGCATTATTCTACTCGCT
GGCTTTATTCGATATCCACCAACAACATGGCCGCCATGTTGTCCAAGCTG
TTTCTCTTGACAACATGATCAAAACATTACAAAATAAAATCAACGAATTG
AAGCGTGAACGGTCCAGTAACAAAGATACTACAAAAGAGCCTTCGATTGG
CGGGAAAAGTGAAACGTCAGACGAAACCGCGCGGCGTGATGATAAAGATA
AAGAAGATGAGAAAAGAGCTCAGGTGGTGGCGAAATCTAAACCAGTAACG
ATTAGAATATGTAGTCAGAATTTGTTTAAGCTGTTCATGAAACATATATG
TCCGTTACAAATCAAAAAGAAACGACAAGAAATAGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045872-exon-scaffold_102-1575043694:154899..155344 | TCONS_00045872-exon-scaffold_102-1575043694:154899..155344 | Clytia hemisphaerica | exon |
| TCONS_00045872-exon-scaffold_102-1575043694:154325..154465 | TCONS_00045872-exon-scaffold_102-1575043694:154325..154465 | Clytia hemisphaerica | exon |
| TCONS_00045872-exon-scaffold_102-1575043694:152936..153106 | TCONS_00045872-exon-scaffold_102-1575043694:152936..153106 | Clytia hemisphaerica | exon |
| TCONS_00045872-exon-scaffold_102-1510915933:154899..155344 | TCONS_00045872-exon-scaffold_102-1510915933:154899..155344 | Clytia hemisphaerica | exon |
| TCONS_00045872-exon-scaffold_102-1510915933:154325..154465 | TCONS_00045872-exon-scaffold_102-1510915933:154325..154465 | Clytia hemisphaerica | exon |
| TCONS_00045872-exon-scaffold_102-1510915933:152936..153106 | TCONS_00045872-exon-scaffold_102-1510915933:152936..153106 | Clytia hemisphaerica | exon |
| TCONS_00045872-exon-scaffold_102-1491911889:154899..155344 | TCONS_00045872-exon-scaffold_102-1491911889:154899..155344 | Clytia hemisphaerica | exon |
| TCONS_00045872-exon-scaffold_102-1491911889:154325..154465 | TCONS_00045872-exon-scaffold_102-1491911889:154325..154465 | Clytia hemisphaerica | exon |
| TCONS_00045872-exon-scaffold_102-1491911889:152936..153106 | TCONS_00045872-exon-scaffold_102-1491911889:152936..153106 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_102 | supercontig | scaffold_102:152936..155344 - |
Blast
The following BLAST results are available for this feature:
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