TCONS_00045868 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045868
Unique NameTCONS_00045868
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1589

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045868 ID=TCONS_00045868|Name=TCONS_00045868|organism=Clytia hemisphaerica|type=transcript|length=1589bp
taatttttcaatctCGAATCGAATTGGAACGTGCTAAGACGTGTTAATTT
TGGAGATTTTTAATTTAATAATATGATGGATATAATGAATGCAGAACAGG
TGATGGAATTGGTCCAAAAAGCAAAGGATCAAATGAAAGAATGGGATGAT
GGTAAGGAACAGAGAGAATTGTTGGTCGAAAAGTTGAAGGAAGAAGAAAA
GTTGAGAAAGACAAGAGAAGAAGGGTTATTGGCGAAAGaagctgaaaaaa
taaaaatagttgAAGAAGCAGTGAATGATTTAGATAAGGAATCTCAAAAA
GAGTTGAAGGCTAGAACAGAGAGATTCAACTCAAAACTTGATAACCTGtg
tggaaaattttttaaacgaattTACAATCTTGAGGATGAACGTGATTTAC
TTAGGTCAACTCTAAAAGAAGCTTTGAAACAAAAGCATGACAGTGATCAA
AGGTTGACATGCGCCATTTTGCAGATTGAAAATATGCTGTATGAATGTGA
CCAAGCAAAGGAAATCAAAGAGGAAAATGTTAAGTTGAAGAAACAGATCA
ATCTTCtcatcaaagaaaaagaaaatgaacgcACAAAAGAATCCGACcta
aaatttcaaagtgaagaTTCAATGGGAACAAGCTCATCACTAGAAAACAA
ACCAAGTGGAAATGACATTGTTATGCAACAAGAATTGagaaaaacagcag
aaaaaaaAGCTGATGTCAGTTTGGAGAAACCACACATGGTAGCTGTTGTG
ACCGAAGAGCGCAAATCACAACAATCTTCAGCAAAGAAACAGAGCAAGGT
TGAGACGGTCGTTCCCCAAAAAGCTCCACAATCACCGCTGACGGAAAAAT
TTGCTGAACAGAAGAAGCGTCGGGCGTTGAAGAATGAAAAACTAGCTGAA
AAGACCCCTGTCCCAAAATTTACAGAATCGAAACATAACAACGCTTCACC
AGATATACAAAAAAATCGATCAAGGCCATTAAACAAAGCAAACAATAAAT
TTGCTGAAAGAAGCCAAAGTACCCAATCATTAGGAAAGAAGGCCCAACGA
GTTATCAAAGTAAGCAACACAGCCGTCAAGAAAGTTCACATGACCCAAGA
ACAAAAGAAGGTGCTACGAGTTATCAAAGAAAATGCCACAGCCGTCAAGA
AAGGTCACGTCACCCAAGTATCAGACAAGAAGCCACCACGTGCTGCCAAA
AACAAACCTATGACTGGCTTGCAAAAGGATGTCAGAATGCAAAGCAATGA
TTCTCAAGATTGGCGTAATGGAAAGATTGCATTGACTTCTGTTTTCATTA
AAGAAGGCATACAACAGGTTAAAAGAAACGTCCCAACTGATAGCAAAAAT
CAAGCAAAACTCGAATCAAGCCAATCAGTTGACGACATCAAGCCTAAGAA
ATCTAAACCAAACTCGAACGCGTCGCCATCAAGACGACAACCTGGTTTCA
AAAACCACCCTGGTTTCACACTGAAACAATTTGCTCCCAAAGTGTTCTAC
CATAATGGACATCACTTCCCATGTACAGAATGTTGGGAATAAATCCCAGC
AGctaatttttagaattttttaacttattacttttttat
Run BLAST on NCBI

protein sequence of TCONS_00045868-protein

>TCONS_00045868-protein ID=TCONS_00045868-protein|Name=TCONS_00045868-protein|organism=Clytia hemisphaerica|type=polypeptide|length=489bp
MMDIMNAEQVMELVQKAKDQMKEWDDGKEQRELLVEKLKEEEKLRKTREE
GLLAKEAEKIKIVEEAVNDLDKESQKELKARTERFNSKLDNLCGKFFKRI
YNLEDERDLLRSTLKEALKQKHDSDQRLTCAILQIENMLYECDQAKEIKE
ENVKLKKQINLLIKEKENERTKESDLKFQSEDSMGTSSSLENKPSGNDIV
MQQELRKTAEKKADVSLEKPHMVAVVTEERKSQQSSAKKQSKVETVVPQK
APQSPLTEKFAEQKKRRALKNEKLAEKTPVPKFTESKHNNASPDIQKNRS
RPLNKANNKFAERSQSTQSLGKKAQRVIKVSNTAVKKVHMTQEQKKVLRV
IKENATAVKKGHVTQVSDKKPPRAAKNKPMTGLQKDVRMQSNDSQDWRNG
KIALTSVFIKEGIQQVKRNVPTDSKNQAKLESSQSVDDIKPKKSKPNSNA
SPSRRQPGFKNHPGFTLKQFAPKVFYHNGHHFPCTECWE
Run BLAST on NCBI

transcript from alignment at scaffold_102:52802..55125-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045868 ID=TCONS_00045868|Name=TCONS_00045868|organism=Clytia hemisphaerica|type=transcript|length=2324bp|location=Sequence derived from alignment at scaffold_102:52802..55125- (Clytia hemisphaerica)
TAATTTTTCAATCTCGAATCGAATTGGAACGTGCTAAGACGTGTTAATTT
TGGAGATTTTTAATTTAATAATATGATGGATATAATGAATGCAGAACAGG
TGATGGAATTGGTCCAAAAAGCAAAGGATCAAATGAAAGAATGGGATGAT
GGTAAGGAACAGAGAGAATTGTTGGTCGAAAAGTTGAAGGAAGAAGAAAA
GTTGAGAAAGACAAGAGAAGAAGGGTTATTGGCGAAAGAAGCTGAAAAAA
TAAAAATAGTTGAAGAAGCAGTGAATGATTTAGATAAGGAATCTCAAAAA
GAGTTGAAGGCTAGAACAGAGAGATTCAACTCAAAACTTGATAACCTGTG
TGGAAAATTTTTTAAACGAATTTACAATCTTGAGGATGAACGTGATTTAC
TTAGGTCAACTCTAAAAGAAGCTTTGAAACAAAAGCATGACAGTGATCAA
AGGTTGACATGCGCCATTTTGCAGATTGAAAATATGCTGTATGAATGTGA
CCAAGCAAAGGAAATCAAAGAGGAAAATGTTAAGTTGAAGAAACAGATCA
ATCTTCTCATCAAAGAAAAAGAAAATGAACGCACAAAAGAATCCGACCTA
AAATTTCAAAGTGAAGATTCAATGGGAACAAGCTCATCACTAGAAAACAA
ACCAAGTGGAAATGACATTGTTATGCAACAAGAATTGAGAAAAACAGCAG
AAAAAAAAGCTGATGTCAGTTTGGAGAAACCACACATGGTAGCTGTTGTG
ACCGAAGAGCGCAAATCACAACAATCTTCAGCAAAGAAACAGAGCAAGGT
GATTTTCATTAGTTGGTCTTCAAAAAGTCTCAAATACATTCTATTAATAG
AGCATTGATTTAATCCATGATTACAGTGTATGTAGTCTCCATAAATCGAA
CACGAACGGGGAACACAAATTTGTTCGAGCTCGAAGACTGGTTTATATTA
TCAGGAAGGGTCCAGAAAACCTGTTCGAGTTAAGGTTGGGGAGAGTTAGG
GAAATTGACCGACGGGTATGTGCGGCGATTGAGGGTATGTTTTTGAGATG
CCTTGGAGTTTTTGCAAGATACTTCACTAATTGGTCATTTAAAGTGATAG
AGATGACGCGTTCTTTAGAAAAAGTAATAAGATTCTTTTATTACATCATA
ACGACCAACCAAATCAAATAAGAGCTTGTAAAAACTCCAGCTTGTCCCAT
GTTTTTCCGGATAGCATAAATGCACTTTAAGGGTGGAAATTTAAGCAAAT
CCGAAAATTTTGCACGAAAATGTTGATTTATTTGCATTGTAAGGGTGCAA
TTCTAAAAGCCAATTTTTTCCGCACATAGGGTCAGTTGGTAAACCCAGTG
CCCCGGGAGTTAAAGAGACGTTCGATAGGTTCGAGTTATAAAGACTTCGC
TGTTGTATATTCTTAGATGAACGTTGAAACAACGTTGTGTGCCAGCTGGG
ATAGTATATGTATACCCATTTTTATATACTGAAAGATAGAATACTAGTGA
AGAATTAAACTTTCTATTTTCTATATACTTCAGGTTGAGACGGTCGTTCC
CCAAAAAGCTCCACAATCACCGCTGACGGAAAAATTTGCTGAACAGAAGA
AGCGTCGGGCGTTGAAGAATGAAAAACTAGCTGAAAAGACCCCTGTCCCA
AAATTTACAGAATCGAAACATAACAACGCTTCACCAGATATACAAAAAAA
TCGATCAAGGCCATTAAACAAAGCAAACAATAAATTTGCTGAAAGAAGCC
AAAGTACCCAATCATTAGGAAAGAAGGCCCAACGAGTTATCAAAGTAAGC
AACACAGCCGTCAAGAAAGTTCACATGACCCAAGAACAAAAGAAGGTGCT
ACGAGTTATCAAAGAAAATGCCACAGCCGTCAAGAAAGGTCACGTCACCC
AAGTATCAGACAAGAAGCCACCACGTGCTGCCAAAAACAAACCTATGACT
GGCTTGCAAAAGGATGTCAGAATGCAAAGCAATGATTCTCAAGATTGGCG
TAATGGAAAGATTGCATTGACTTCTGTTTTCATTAAAGAAGGCATACAAC
AGGTTAAAAGAAACGTCCCAACTGATAGCAAAAATCAAGCAAAACTCGAA
TCAAGCCAATCAGTTGACGACATCAAGCCTAAGAAATCTAAACCAAACTC
GAACGCGTCGCCATCAAGACGACAACCTGGTTTCAAAAACCACCCTGGTT
TCACACTGAAACAATTTGCTCCCAAAGTGTTCTACCATAATGGACATCAC
TTCCCATGTACAGAATGTTGGGAATAAATCCCAGCAGCTAATTTTTAGAA
TTTTTTAACTTATTACTTTTTTAT

Coding sequence (CDS) from alignment at scaffold_102:52802..55125-

>TCONS_00045868 ID=TCONS_00045868|Name=TCONS_00045868|organism=Clytia hemisphaerica|type=CDS|length=2940bp|location=Sequence derived from alignment at scaffold_102:52802..55125- (Clytia hemisphaerica)
GTTGAGACGGTCGTTCCCCAAAAAGCTCCACAATCACCGCTGACGGAAAA
ATTTGCTGAACAGAAGAAGCGTCGGGCGTTGAAGAATGAAAAACTAGCTG
AAAAGACCCCTGTCCCAAAATTTACAGAATCGAAACATAACAACGCTTCA
CCAGATATACAAAAAAATCGATCAAGGCCATTAAACAAAGCAAACAATAA
ATTTGCTGAAAGAAGCCAAAGTACCCAATCATTAGGAAAGAAGGCCCAAC
GAGTTATCAAAGTAAGCAACACAGCCGTCAAGAAAGTTCACATGACCCAA
GAACAAAAGAAGGTGCTACGAGTTATCAAAGAAAATGCCACAGCCGTCAA
GAAAGGTCACGTCACCCAAGTATCAGACAAGAAGCCACCACGTGCTGCCA
AAAACAAACCTATGACTGGCTTGCAAAAGGATGTCAGAATGCAAAGCAAT
GATTCTCAAGATTGGCGTAATGGAAAGATTGCATTGACTTCTGTTTTCAT
TAAAGAAGGCATACAACAGGTTAAAAGAAACGTCCCAACTGATAGCAAAA
ATCAAGCAAAACTCGAATCAAGCCAATCAGTTGACGACATCAAGCCTAAG
AAATCTAAACCAAACTCGAACGCGTCGCCATCAAGACGACAACCTGGTTT
CAAAAACCACCCTGGTTTCACACTGAAACAATTTGCTCCCAAAGTGTTCT
ACCATAATGGACATCACTTCCCATGTACAGAATGTTGGGAATAAATGATG
GATATAATGAATGCAGAACAGGTGATGGAATTGGTCCAAAAAGCAAAGGA
TCAAATGAAAGAATGGGATGATGGTAAGGAACAGAGAGAATTGTTGGTCG
AAAAGTTGAAGGAAGAAGAAAAGTTGAGAAAGACAAGAGAAGAAGGGTTA
TTGGCGAAAGAAGCTGAAAAAATAAAAATAGTTGAAGAAGCAGTGAATGA
TTTAGATAAGGAATCTCAAAAAGAGTTGAAGGCTAGAACAGAGAGATTCA
ACTCAAAACTTGATAACCTGTGTGGAAAATTTTTTAAACGAATTTACAAT
CTTGAGGATGAACGTGATTTACTTAGGTCAACTCTAAAAGAAGCTTTGAA
ACAAAAGCATGACAGTGATCAAAGGTTGACATGCGCCATTTTGCAGATTG
AAAATATGCTGTATGAATGTGACCAAGCAAAGGAAATCAAAGAGGAAAAT
GTTAAGTTGAAGAAACAGATCAATCTTCTCATCAAAGAAAAAGAAAATGA
ACGCACAAAAGAATCCGACCTAAAATTTCAAAGTGAAGATTCAATGGGAA
CAAGCTCATCACTAGAAAACAAACCAAGTGGAAATGACATTGTTATGCAA
CAAGAATTGAGAAAAACAGCAGAAAAAAAAGCTGATGTCAGTTTGGAGAA
ACCACACATGGTAGCTGTTGTGACCGAAGAGCGCAAATCACAACAATCTT
CAGCAAAGAAACAGAGCAAGGTTGAGACGGTCGTTCCCCAAAAAGCTCCA
CAATCACCGCTGACGGAAAAATTTGCTGAACAGAAGAAGCGTCGGGCGTT
GAAGAATGAAAAACTAGCTGAAAAGACCCCTGTCCCAAAATTTACAGAAT
CGAAACATAACAACGCTTCACCAGATATACAAAAAAATCGATCAAGGCCA
TTAAACAAAGCAAACAATAAATTTGCTGAAAGAAGCCAAAGTACCCAATC
ATTAGGAAAGAAGGCCCAACGAGTTATCAAAGTAAGCAACACAGCCGTCA
AGAAAGTTCACATGACCCAAGAACAAAAGAAGGTGCTACGAGTTATCAAA
GAAAATGCCACAGCCGTCAAGAAAGGTCACGTCACCCAAGTATCAGACAA
GAAGCCACCACGTGCTGCCAAAAACAAACCTATGACTGGCTTGCAAAAGG
ATGTCAGAATGCAAAGCAATGATTCTCAAGATTGGCGTAATGGAAAGATT
GCATTGACTTCTGTTTTCATTAAAGAAGGCATACAACAGGTTAAAAGAAA
CGTCCCAACTGATAGCAAAAATCAAGCAAAACTCGAATCAAGCCAATCAG
TTGACGACATCAAGCCTAAGAAATCTAAACCAAACTCGAACGCGTCGCCA
TCAAGACGACAACCTGGTTTCAAAAACCACCCTGGTTTCACACTGAAACA
ATTTGCTCCCAAAGTGTTCTACCATAATGGACATCACTTCCCATGTACAG
AATGTTGGGAATAAATGATGGATATAATGAATGCAGAACAGGTGATGGAA
TTGGTCCAAAAAGCAAAGGATCAAATGAAAGAATGGGATGATGGTAAGGA
ACAGAGAGAATTGTTGGTCGAAAAGTTGAAGGAAGAAGAAAAGTTGAGAA
AGACAAGAGAAGAAGGGTTATTGGCGAAAGAAGCTGAAAAAATAAAAATA
GTTGAAGAAGCAGTGAATGATTTAGATAAGGAATCTCAAAAAGAGTTGAA
GGCTAGAACAGAGAGATTCAACTCAAAACTTGATAACCTGTGTGGAAAAT
TTTTTAAACGAATTTACAATCTTGAGGATGAACGTGATTTACTTAGGTCA
ACTCTAAAAGAAGCTTTGAAACAAAAGCATGACAGTGATCAAAGGTTGAC
ATGCGCCATTTTGCAGATTGAAAATATGCTGTATGAATGTGACCAAGCAA
AGGAAATCAAAGAGGAAAATGTTAAGTTGAAGAAACAGATCAATCTTCTC
ATCAAAGAAAAAGAAAATGAACGCACAAAAGAATCCGACCTAAAATTTCA
AAGTGAAGATTCAATGGGAACAAGCTCATCACTAGAAAACAAACCAAGTG
GAAATGACATTGTTATGCAACAAGAATTGAGAAAAACAGCAGAAAAAAAA
GCTGATGTCAGTTTGGAGAAACCACACATGGTAGCTGTTGTGACCGAAGA
GCGCAAATCACAACAATCTTCAGCAAAGAAACAGAGCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029312XLOC_029312Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045868-proteinTCONS_00045868-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045868-exon-scaffold_102-1575043694:54328..55125TCONS_00045868-exon-scaffold_102-1575043694:54328..55125Clytia hemisphaericaexon
TCONS_00045868-exon-scaffold_102-1575043694:52802..53592TCONS_00045868-exon-scaffold_102-1575043694:52802..53592Clytia hemisphaericaexon
TCONS_00045868-exon-scaffold_102-1510915933:54328..55125TCONS_00045868-exon-scaffold_102-1510915933:54328..55125Clytia hemisphaericaexon
TCONS_00045868-exon-scaffold_102-1510915933:52802..53592TCONS_00045868-exon-scaffold_102-1510915933:52802..53592Clytia hemisphaericaexon
TCONS_00045868-exon-scaffold_102-1491911889:54328..55125TCONS_00045868-exon-scaffold_102-1491911889:54328..55125Clytia hemisphaericaexon
TCONS_00045868-exon-scaffold_102-1491911889:52802..53592TCONS_00045868-exon-scaffold_102-1491911889:52802..53592Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_102supercontigscaffold_102:52802..55125 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.17996	0.0501397	0.211424	0.468795	0.208016	0.191773	0.0661047	0.0618864	0.0866563	0.0536689	0.156277	0	0	0	0	0	0	0	0.136644	0.0857926	0.0248564	0	0.0589537	0.0535975	0.0276021	0.197074	0.0352515	0	0.0285344	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045868 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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