|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045866 ID=TCONS_00045866|Name=TCONS_00045866|organism=Clytia hemisphaerica|type=transcript|length=1154bp
ATTTTTCGAATTCTAGAGTTGATCGGTTTTTAAAAGAGTAAATCAAATTT
TGACTCGCCTCAACGAAGAAAACACGTACGTTGAAGGCGATATTCTAGAG
TTGCATTTGAAATTCGTCAGATTTCCGCcttaaaaatttgacgtcaaata
cacAATTGAACATTTTTCCtctatgaaaataaatttaaagaaaaaaatcg
aacaaaggCAAAACAAACACCGTGATGGATTCGAATGAAGAGGAAATTGG
AACTAAAGGCAATGAAGGTTTCTATAAATCATAAAGTGTTAATATGTTTG
GTATTTTTCAACTCTCCACTCGTGTTGAGTATAATTTATAACCACATGGT
GCAAGgaTGTGACAAATATAAGACATACGAGTACTGCGTTGGACAATCTG
CTTTCCTATCCCATGCAGAAAAACAGGATTATGCTTGGTTTAGAGTCAAC
GAAAAGGAAAAACCCGCACAACTAAAGAACACTGTTTTCGATCAAGATGG
ATACGAAATCAAAAATGATGAAAGGCATTCTATTGAAGGTGGTTCCCTGC
GTATTAAAGAACTTGTACCCACTGACCACGCATTATACTTCTATAAACGA
AAATTTACAACAATCCTCGAATGTCCAAATTATAGGCTAAACGTATATGG
TTTAAGAAGTGAATCCAACAGCTCGAGTATCAAGATTAAACAGGGAGACA
CTGCCGTTTTAGGATTTTATTCAAACATACCAGAGACATATAATCCTAAA
GATTCCAAGATATACAAAATGGACGGTAAAGTCATGTTTGACGGAAATAA
TGGCAACACAGGAAATTACAAACTTGAAAGTAAAGTCAAAAGAATACCCT
TTCAGTATATGACAAATGATTTTGAGAAATACAAATATTCTGTCTTGACT
TATACAGCTTTGACCATTCACGATATACAAAAGAAACAAGAAGGCGTTTG
GAAAAGCCAGTGGCATACCAATGAAGTTTGTCCGAAAAAGATTTCGTCCG
AAGTTGTCGTACATGTTCATGATCCAACGTCAAAAGGAAAGACAACAGCT
CCAAGAACAATAACAACAACCCCTACAATAATCAAACCCAAACCTAAGAA
AACCAGTTCCGGAGCTTCGAAGGCGGTTGCATCACTATGTTCATTATGTA
TGGC Run BLAST on NCBI protein sequence of TCONS_00045866-protein >TCONS_00045866-protein ID=TCONS_00045866-protein|Name=TCONS_00045866-protein|organism=Clytia hemisphaerica|type=polypeptide|length=306bp
MKRKLELKAMKVSINHKVLICLVFFNSPLVLSIIYNHMVQGCDKYKTYEY
CVGQSAFLSHAEKQDYAWFRVNEKEKPAQLKNTVFDQDGYEIKNDERHSI
EGGSLRIKELVPTDHALYFYKRKFTTILECPNYRLNVYGLRSESNSSSIK
IKQGDTAVLGFYSNIPETYNPKDSKIYKMDGKVMFDGNNGNTGNYKLESK
VKRIPFQYMTNDFEKYKYSVLTYTALTIHDIQKKQEGVWKSQWHTNEVCP
KKISSEVVVHVHDPTSKGKTTAPRTITTTPTIIKPKPKKTSSGASKAVAS
LCSLCM Run BLAST on NCBI transcript from alignment at scaffold_102:539462..543048+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045866 ID=TCONS_00045866|Name=TCONS_00045866|organism=Clytia hemisphaerica|type=transcript|length=3587bp|location=Sequence derived from alignment at scaffold_102:539462..543048+ (Clytia hemisphaerica)
ATTTTTCGAATTCTAGAGTTGATCGGTTTTTAAAAGAGTAAATCAAATTT
TGACTCGCCTCAACGAAGAAAACACGTACGTTGAAGGCGATATTCTAGAG
TTGCATTTGAAATTCGTCAGATTTCCGCcttaaaaatttgacgtcaaata
cacAATTGAACATTTTTCCtctatgaaaataaatttaaagaaaaaaatcg
aacaaaggCAAAACAAACACCGTGATGGATTCGAATGAAGAGGAAATTGG
AACTAAAGGCAATGAAGGTTTCTATAAATCATAAAGTGTTAATATGTTTG
GTATTTTTCAACTCTCCACTCGTGTTGAGTATAATTTATAACCACATGGT
GCAAGGTAAATAGGATTTATTTATATCCCattctaactgaaaaattcgta
tgaggtaatctttgcatgtctcagccaatcagagTTTTACTCGGCATTTT
CTCGTGACTTTCTtatatgaatctgctaataagAAATTTGTGAATTCCTC
AAAAATTAGTCAATTCATTAaagatgttttttatttatttcaggaTGTGA
CAAATATAAGACATACGAGTACTGCGTTGGACAATCTGCTTTCCTATCCC
ATGCAGAAAAACAGGATTATGCTTGGTTTAGAGTCAACGAAAAGGAAAAA
CCCGCACAACTAAAGAACACTGTTTTCGATCAAGATGGATACGAAATCAA
AAATGATGAAAGGCATTCTATTGAAGGTGGTTCCCTGCGTATTAAAGAAC
TTGTACCCACTGACCACGCATTATACTTCTATAAACGAAAATTTACAACA
ATCCTCGAATGTCCAAATTATAGGCTAAACGTATATGGTAAGATATTTGC
ATTGTATTTTTCATAGAAGACGCCCCGCTTGCTTTCCCACGactgaaatg
ctgaatcagctaTTTGGGCAAACAAGTTTAGATCAACCAACCCAGCTTAA
ACATAACTTCAAAGGTCTTCTTAGCGGTCATATCGTCAATATAACGCCAT
AACGTTGTCTGCCATCAGCGGAGTTACTGATTAGCCTTGTCATGGTAAGG
AGAAACGCACTTAAAGGTTTtacttttacataagtgtttccgtttcatat
cagacacatgtttcatatcaggacaagTGTCTtgtattgttatattatgc
tgatataaacaaaaaatatttttcttttccttcttctGACTAATTTTGCT
CCACAatcgtgtcaattcaatgtgaaaaagcttgtaaattaaaattgatg
agtaagcaaacgatatcactcttatttaaaaacaaaacctttaaaatgac
CTAAGATCAAAATCAGCATTATATTTGGCAGGGAACTCTTGCTTTGGCGG
ACCTCTCAAAAAGCAAGGAAATATCTTCCTTTATTGTGGATTGACGCAAC
GCTAAAGGTTTTTACTCCTTTCTTGAATCAAACCAAATTTCTAAGCTAAT
AAACAGAGTGCAAGATTTGAGGTTAtaataactcctgaccacttgattta
aatgTGCACAACCGTAATTCTACTAATTGTCTACTTACCTTTTAAGCTTC
AAgcttttatttctaaatttgaaatttagaatttcaaaaagataatACGC
GCTGGAAAAGGTTAAATACTGTTAAATATTTGGTTTAAATCAGTCGATTC
CAGAAATTAAGAATAAAAACAACCATCTTCAGTGCTAGATgttaaaaatt
aattgaaattcgTTAGATATTGTCTTAACAATAATATaacatttaacaaa
atttaataaaactttTACTTTCACTTTTCAGGTTTAAGAAGTGAATCCAA
CAGCTCGAGTATCAAGATTAAACAGGGAGACACTGCCGTTTTAGGATTTT
ATTCAAACATACCAGAGACATATAATCCTAAAGATTCCAAGATATACAAA
ATGGACGGTAAAGTCATGTTTGACGGAAATAATGGCAACACAGGAAATTA
CAAACTTGAAAGTAAAGTCAAAAGAATACCCTTTCAGTATATGACAAATG
ATTTTGAGAAATACAAATATTCTGTCTTGACTTATACAGGTGAGttatat
tgggcttttccagaaaaaaaactgtaAACCCCCTGTTGAAGAGGTCCAAA
CTTTTGTTGCTAGAAATACTGTAACCCCTTAGAATTCTAGGAAATTTTAG
GTATAAAACCCCTCtcgaattctgaattttagtaggatttaaaaaaatta
aaaattccccatggaattcctgctaattttgacagatttttgtatatcCA
TATGGAATTCCGctacatatcaaaccttaccccctagGAACGGAAATGGA
TCTCTTCAACAGGGGGTATAtggtttttctggaaaagcccagtTTTAACC
TATATTTGaagcccgggggtactaggtttgagATGTCCGGGTATGTCCGA
GAGTCTGAAAATCgaaccttagagagactgaatttcgaaacaTTTGCCCT
TCCTTTCAAcgtttttgctaaaaaaattattgttggTATATCTTTAAAGT
ACATTCAAAATGTAATAATACTTAACCAATTGCTTGcacttttaatttct
ttatttcttgtaTCAAAAGCTTTGACCATTCACGATATNGcactttcaat
ttctttatttcttgtaTTAAAAGCTTTGACCATTCACGATATACAAAAGA
AACAAGAAGGCGTTTGGAAAAGCCAGTGGCATACCAATGAAGTTTGTCCG
AAAAAGATTTCGTCCGAAGTTGTCGTACATGTTCATGGTGAGTCATTATT
ACAAATTTTTGCTGGTATTCTTTACATCACCAAATCGcaatttatctgat
attccgatggtggattggcggccgcccaggctaaagctctaaaggagcgg
gccaatttcatTTCATCCTTCTATCCAAAAGTTTTCGAAtatcttttaac
tttttatacTTTGACACACGTGCAAAATCTTTTTCTAACTGTAATTTTGC
GAAAGAAATATGCTTCACGTGTTTCAAATTACGCGGGTTTTAGCTTTGGG
AATCGTTTGCGCGTAgtcaattttgcaattttggtcattttgaatAATTC
TGAATTTCGCTAAATTGTGCTCAAAAGCTTACGAAGTTGAGTacactttt
tttctataagaaccagtaaatttttgctgaggctcggctgttcttatttt
tttggcactttgagccttgaattgttcttatttttttggccctttgagcc
ttgaattgttcttatttttttggcactttgagccttggattgttcttatt
ttgttcgtattttttctaaggtaaaaaacaagttttggctatttatttta
ctatttagaggattttagaaaccagtgattctaTAAACTTTACTCGATTA
CTCAAAATTCTTAACTTAACTCGAACAGATTCGTCTTCCCCATGCctgtt
caagttatggagactccaccgtaacagtaattttttttcatttcgtcTCC
TTAGATCCAACGTCAAAAGGAAAGACAACAGCTCCAAGAACAATAACAAC
AACCCCTACAATAATCAAACCCAAACCTAAGAAAACCAGTTCCGGAGCTT
CGAAGGCGGTTGCATCACTATGTTCATTATGTATGGC Coding sequence (CDS) from alignment at scaffold_102:539462..543048+ >TCONS_00045866 ID=TCONS_00045866|Name=TCONS_00045866|organism=Clytia hemisphaerica|type=CDS|length=4590bp|location=Sequence derived from alignment at scaffold_102:539462..543048+ (Clytia hemisphaerica)
ATGAAGAGGAAATTGGAACTAAAGGCAATGAAGGTTTCTATAAATCATAA
AGTGTTAATATGTTTGGTATTTTTCAACTCTCCACTCGTGTTGAGTATAA
TTTATAACCACATGGTGCAAGgaTGTGACAAATATAAGACATACGAGTAC
TGCGTTGGACAATCTGCTTTCCTATCCCATGCAGAAAAACAGGATTATGC
TTGGTTTAGAGTCAACGAAAAGGAAAAACCCGCACAACTAAAGAACACTG
TTTTCGATCAAGATGGATACGAAATCAAAAATGATGAAAGGCATTCTATT
GAAGGTGGTTCCCTGCGTATTAAAGAACTTGTACCCACTGACCACGCATT
ATACTTCTATAAACGAAAATTTACAACAATCCTCGAATGTCCAAATTATA
GGCTAAACGTATATGGTTTAAGAAGTGAATCCAACAGCTCGAGTATCAAG
ATTAAACAGGGAGACACTGCCGTTTTAGGATTTTATTCAAACATACCAGA
GACATATAATCCTAAAGATTCCAAGATATACAAAATGGACGGTAAAGTCA
TGTTTGACGGAAATAATGGCAACACAGGAAATTACAAACTTGAAAGTAAA
GTCAAAAGAATACCCTTTCAGTATATGACAAATGATTTTGAGAAATACAA
ATATTCTGTCTTGACTTATACAGCTTTGACCATTCACGATATACAAAAGA
AACAAGAAGGCGTTTGGAAAAGCCAGTGGCATACCAATGAAGTTTGTCCG
AAAAAGATTTCGTCCGAAGTTGTCGTACATGTTCATGATCCAACGTCAAA
AGGAAAGACAACAGCTCCAAGAACAATAACAACAACCCCTACAATAATCA
AACCCAAACCTAAGAAAACCAGTTCCGGAGCTTCGAAGGCGGTTGCATCA
CTATGTTCATTATGTATGATGAAGAGGAAATTGGAACTAAAGGCAATGAA
GGTTTCTATAAATCATAAAGTGTTAATATGTTTGGTATTTTTCAACTCTC
CACTCGTGTTGAGTATAATTTATAACCACATGGTGCAAGgaTGTGACAAA
TATAAGACATACGAGTACTGCGTTGGACAATCTGCTTTCCTATCCCATGC
AGAAAAACAGGATTATGCTTGGTTTAGAGTCAACGAAAAGGAAAAACCCG
CACAACTAAAGAACACTGTTTTCGATCAAGATGGATACGAAATCAAAAAT
GATGAAAGGCATTCTATTGAAGGTGGTTCCCTGCGTATTAAAGAACTTGT
ACCCACTGACCACGCATTATACTTCTATAAACGAAAATTTACAACAATCC
TCGAATGTCCAAATTATAGGCTAAACGTATATGGTTTAAGAAGTGAATCC
AACAGCTCGAGTATCAAGATTAAACAGGGAGACACTGCCGTTTTAGGATT
TTATTCAAACATACCAGAGACATATAATCCTAAAGATTCCAAGATATACA
AAATGGACGGTAAAGTCATGTTTGACGGAAATAATGGCAACACAGGAAAT
TACAAACTTGAAAGTAAAGTCAAAAGAATACCCTTTCAGTATATGACAAA
TGATTTTGAGAAATACAAATATTCTGTCTTGACTTATACAGCTTTGACCA
TTCACGATATACAAAAGAAACAAGAAGGCGTTTGGAAAAGCCAGTGGCAT
ACCAATGAAGTTTGTCCGAAAAAGATTTCGTCCGAAGTTGTCGTACATGT
TCATGATCCAACGTCAAAAGGAAAGACAACAGCTCCAAGAACAATAACAA
CAACCCCTACAATAATCAAACCCAAACCTAAGAAAACCAGTTCCGGAGCT
TCGAAGGCGGTTGCATCACTATGTTCATTATGTATGATGAAGAGGAAATT
GGAACTAAAGGCAATGAAGGTTTCTATAAATCATAAAGTGTTAATATGTT
TGGTATTTTTCAACTCTCCACTCGTGTTGAGTATAATTTATAACCACATG
GTGCAAGgaTGTGACAAATATAAGACATACGAGTACTGCGTTGGACAATC
TGCTTTCCTATCCCATGCAGAAAAACAGGATTATGCTTGGTTTAGAGTCA
ACGAAAAGGAAAAACCCGCACAACTAAAGAACACTGTTTTCGATCAAGAT
GGATACGAAATCAAAAATGATGAAAGGCATTCTATTGAAGGTGGTTCCCT
GCGTATTAAAGAACTTGTACCCACTGACCACGCATTATACTTCTATAAAC
GAAAATTTACAACAATCCTCGAATGTCCAAATTATAGGCTAAACGTATAT
GGTTTAAGAAGTGAATCCAACAGCTCGAGTATCAAGATTAAACAGGGAGA
CACTGCCGTTTTAGGATTTTATTCAAACATACCAGAGACATATAATCCTA
AAGATTCCAAGATATACAAAATGGACGGTAAAGTCATGTTTGACGGAAAT
AATGGCAACACAGGAAATTACAAACTTGAAAGTAAAGTCAAAAGAATACC
CTTTCAGTATATGACAAATGATTTTGAGAAATACAAATATTCTGTCTTGA
CTTATACAGCTTTGACCATTCACGATATACAAAAGAAACAAGAAGGCGTT
TGGAAAAGCCAGTGGCATACCAATGAAGTTTGTCCGAAAAAGATTTCGTC
CGAAGTTGTCGTACATGTTCATGATCCAACGTCAAAAGGAAAGACAACAG
CTCCAAGAACAATAACAACAACCCCTACAATAATCAAACCCAAACCTAAG
AAAACCAGTTCCGGAGCTTCGAAGGCGGTTGCATCACTATGTTCATTATG
TATGATGAAGAGGAAATTGGAACTAAAGGCAATGAAGGTTTCTATAAATC
ATAAAGTGTTAATATGTTTGGTATTTTTCAACTCTCCACTCGTGTTGAGT
ATAATTTATAACCACATGGTGCAAGgaTGTGACAAATATAAGACATACGA
GTACTGCGTTGGACAATCTGCTTTCCTATCCCATGCAGAAAAACAGGATT
ATGCTTGGTTTAGAGTCAACGAAAAGGAAAAACCCGCACAACTAAAGAAC
ACTGTTTTCGATCAAGATGGATACGAAATCAAAAATGATGAAAGGCATTC
TATTGAAGGTGGTTCCCTGCGTATTAAAGAACTTGTACCCACTGACCACG
CATTATACTTCTATAAACGAAAATTTACAACAATCCTCGAATGTCCAAAT
TATAGGCTAAACGTATATGGTTTAAGAAGTGAATCCAACAGCTCGAGTAT
CAAGATTAAACAGGGAGACACTGCCGTTTTAGGATTTTATTCAAACATAC
CAGAGACATATAATCCTAAAGATTCCAAGATATACAAAATGGACGGTAAA
GTCATGTTTGACGGAAATAATGGCAACACAGGAAATTACAAACTTGAAAG
TAAAGTCAAAAGAATACCCTTTCAGTATATGACAAATGATTTTGAGAAAT
ACAAATATTCTGTCTTGACTTATACAGCTTTGACCATTCACGATATACAA
AAGAAACAAGAAGGCGTTTGGAAAAGCCAGTGGCATACCAATGAAGTTTG
TCCGAAAAAGATTTCGTCCGAAGTTGTCGTACATGTTCATGATCCAACGT
CAAAAGGAAAGACAACAGCTCCAAGAACAATAACAACAACCCCTACAATA
ATCAAACCCAAACCTAAGAAAACCAGTTCCGGAGCTTCGAAGGCGGTTGC
ATCACTATGTTCATTATGTATGATGAAGAGGAAATTGGAACTAAAGGCAA
TGAAGGTTTCTATAAATCATAAAGTGTTAATATGTTTGGTATTTTTCAAC
TCTCCACTCGTGTTGAGTATAATTTATAACCACATGGTGCAAGgaTGTGA
CAAATATAAGACATACGAGTACTGCGTTGGACAATCTGCTTTCCTATCCC
ATGCAGAAAAACAGGATTATGCTTGGTTTAGAGTCAACGAAAAGGAAAAA
CCCGCACAACTAAAGAACACTGTTTTCGATCAAGATGGATACGAAATCAA
AAATGATGAAAGGCATTCTATTGAAGGTGGTTCCCTGCGTATTAAAGAAC
TTGTACCCACTGACCACGCATTATACTTCTATAAACGAAAATTTACAACA
ATCCTCGAATGTCCAAATTATAGGCTAAACGTATATGGTTTAAGAAGTGA
ATCCAACAGCTCGAGTATCAAGATTAAACAGGGAGACACTGCCGTTTTAG
GATTTTATTCAAACATACCAGAGACATATAATCCTAAAGATTCCAAGATA
TACAAAATGGACGGTAAAGTCATGTTTGACGGAAATAATGGCAACACAGG
AAATTACAAACTTGAAAGTAAAGTCAAAAGAATACCCTTTCAGTATATGA
CAAATGATTTTGAGAAATACAAATATTCTGTCTTGACTTATACAGCTTTG
ACCATTCACGATATACAAAAGAAACAAGAAGGCGTTTGGAAAAGCCAGTG
GCATACCAATGAAGTTTGTCCGAAAAAGATTTCGTCCGAAGTTGTCGTAC
ATGTTCATGATCCAACGTCAAAAGGAAAGACAACAGCTCCAAGAACAATA
ACAACAACCCCTACAATAATCAAACCCAAACCTAAGAAAACCAGTTCCGG
AGCTTCGAAGGCGGTTGCATCACTATGTTCATTATGTATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045866-exon-scaffold_102-1491911889:539462..539816 | TCONS_00045866-exon-scaffold_102-1491911889:539462..539816 | Clytia hemisphaerica | exon |
| TCONS_00045866-exon-scaffold_102-1510915933:539462..539816 | TCONS_00045866-exon-scaffold_102-1510915933:539462..539816 | Clytia hemisphaerica | exon |
| TCONS_00045866-exon-scaffold_102-1575043694:539462..539816 | TCONS_00045866-exon-scaffold_102-1575043694:539462..539816 | Clytia hemisphaerica | exon |
| TCONS_00045866-exon-scaffold_102-1491911889:540005..540298 | TCONS_00045866-exon-scaffold_102-1491911889:540005..540298 | Clytia hemisphaerica | exon |
| TCONS_00045866-exon-scaffold_102-1510915933:540005..540298 | TCONS_00045866-exon-scaffold_102-1510915933:540005..540298 | Clytia hemisphaerica | exon |
| TCONS_00045866-exon-scaffold_102-1575043694:540005..540298 | TCONS_00045866-exon-scaffold_102-1575043694:540005..540298 | Clytia hemisphaerica | exon |
| TCONS_00045866-exon-scaffold_102-1491911889:541243..541500 | TCONS_00045866-exon-scaffold_102-1491911889:541243..541500 | Clytia hemisphaerica | exon |
| TCONS_00045866-exon-scaffold_102-1510915933:541243..541500 | TCONS_00045866-exon-scaffold_102-1510915933:541243..541500 | Clytia hemisphaerica | exon |
| TCONS_00045866-exon-scaffold_102-1575043694:541243..541500 | TCONS_00045866-exon-scaffold_102-1575043694:541243..541500 | Clytia hemisphaerica | exon |
| TCONS_00045866-exon-scaffold_102-1491911889:542085..542198 | TCONS_00045866-exon-scaffold_102-1491911889:542085..542198 | Clytia hemisphaerica | exon |
| TCONS_00045866-exon-scaffold_102-1510915933:542085..542198 | TCONS_00045866-exon-scaffold_102-1510915933:542085..542198 | Clytia hemisphaerica | exon |
| TCONS_00045866-exon-scaffold_102-1575043694:542085..542198 | TCONS_00045866-exon-scaffold_102-1575043694:542085..542198 | Clytia hemisphaerica | exon |
| TCONS_00045866-exon-scaffold_102-1491911889:542916..543048 | TCONS_00045866-exon-scaffold_102-1491911889:542916..543048 | Clytia hemisphaerica | exon |
| TCONS_00045866-exon-scaffold_102-1510915933:542916..543048 | TCONS_00045866-exon-scaffold_102-1510915933:542916..543048 | Clytia hemisphaerica | exon |
| TCONS_00045866-exon-scaffold_102-1575043694:542916..543048 | TCONS_00045866-exon-scaffold_102-1575043694:542916..543048 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_102 | supercontig | scaffold_102:539462..543048 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013783 | Ig-like_fold |
Blast
The following BLAST results are available for this feature:
|
