|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045864 ID=TCONS_00045864|Name=TCONS_00045864|organism=Clytia hemisphaerica|type=transcript|length=1090bp
GTCGATTACAAGACTTTTGATTATTGTCCTGGACAATCTACTACACTACA
CCACGCACAGAAAAAAGATTATATTTGGTTTAAAGTTATcgcaaagcaaa
aaaaaagaagcagTGAATTCGATGAAGGATTTGAAGTCAAAAATAGCAAC
AGACATACTATCGAAGCTGGCAATCTACACATCAAAGACCTTGCACCCTC
TGATCATGCATTTTACTTCTATACGCGAGCATCGACGACATTTCTTGAAT
GCCCCGACTATGAAGTTAATGTATATGAAGTAAAACCATTAATCAACAGA
ATCAAAGCTGAAGAAGGCGGTACAGTTGTTTTAAGATTTTGGTCAAACAT
ACCAATAAGAGAATTCAAACCTAAAGCTTCTAAGATATTCAAAGTGAAGG
ATAAAATAATGTTTGATGGTAACAATGGGGATGAAGATAATTATGCACTT
ACAAGTACTACCAAGAGCGTTAATTTTCGGTACAGATCAGATGTTACACA
TAATTTCAAATATGCTGCACATACATATACAAATTTGACGATCCGCAACA
TAAAGAGGAAACAAGCAGGAGTTTGGAAAACCGAATGGACAACTAAAGGG
TTATGCCCAAGAAATTTTTCTCTCGCTGTTCATGTGTGGTTTGATCCTCT
ACCACCAACGACCACAACAACAACTACCactacaacaacaacatcaACGA
CAACGACCACAACGACCACACCAACACCACCGACCACACCTAAACCAAAG
GATCCTCTTGAATCTGGTTCCACAAAAGCAATCGGGGCACTTTTCATGAT
CGCTATTTCATGTGCTTCGGTCTTCGTTTTTTGGAAATTCTATCTTCAAA
AGTAAGGAGTCATTATCTGACTACGTTCTTCTTTTTCTATATAATACCAA
TTTTATAAATTCAGGTTGAAAGTAGCATGCCATTTCACAGTTGCAAAGca
taatgggtaatcaggaccactctgttggtccaaagttttgaaaattcttt
gaagATTATTGCGTATAGCCAACAGAAATCCAgtatggaggcgcaatcag
tcctgattactcaTGATcttttcgactgtgaaatggccta Run BLAST on NCBI transcript from alignment at scaffold_102:532276..536808+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045864 ID=TCONS_00045864|Name=TCONS_00045864|organism=Clytia hemisphaerica|type=transcript|length=4533bp|location=Sequence derived from alignment at scaffold_102:532276..536808+ (Clytia hemisphaerica)
GTCGATTACAAGACTTTTGATTATTGTCCTGGACAATCTACTACACTACA
CCACGCACAGAAAAAAGATTATATTTGGTTTAAAGTTATcgcaaagcaaa
aaaaaagaagcagTGAATTCGATGAAGGATTTGAAGTCAAAAATAGCAAC
AGACATACTATCGAAGCTGGCAATCTACACATCAAAGACCTTGCACCCTC
TGATCATGCATTTTACTTCTATACGCGAGCATCGACGACATTTCTTGAAT
GCCCCGACTATGAAGTTAATGTATATGGTAAGATAAACGTTATTGAAtga
tcattttcaatttcaaaggaAGGGTGCAGGGATGCACGTTCTTTTATAAc
aatattaaaattttttgaaacctttggatgtttctcaactttttgagttt
taagcctaaatatattcttaacatgttcttattttcgccattttttaagT
ATtctattttcctaaaaaaatgttcttaatacttGCCACATCCAAGCCTT
ATGTActtatatatagtttgtttttataaaaaaaagtgtactctaaaaaa
tttaatttccttTTTACAGAAGTAAAACCATTAATCAACAGAATCAAAGC
TGAAGAAGGCGGTACAGTTGTTTTAAGATTTTGGTCAAACATACCAATAA
GAGAATTCAAACCTAAAGCTTCTAAGATATTCAAAGTGAAGGATAAAATA
ATGTTTGATGGTAACAATGGGGATGAAGATAATTATGCACTTACAAGTAC
TACCAAGAGCGTTAATTTTCGGTACAGATCAGATGTTACACATAATTTCA
AATATGCTGCACATACATATACAAGtaagttacacgttttttttttttat
aagaacgtcaaaaattttcgaagccttcggatgttcttatttttttggat
ttgaagcctaaaaatgtNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcccgaagttttcc
tcttcgtcggtaaaatcgctataaaatcgcttaaatttcctcattcgccg
taccagatataaaaagcttccgtcgtgcctgcatgttcttatatagtttg
ttcttataaaaaaaaacgtgtagtggtcagggtacctttttttacacttt
tatgAGTTCCAGGTAGGGTTGCATAAAGTTGACGCTCactaatttgattt
tcaaagaggaatatgattttcatcgaataagggagttaATAAAGCATCGT
TTCTTATTAACGGGGACTttgaatttcatcgaataaaggaGCCTATCGAA
TAAAATCTGTCCCTCGTAGGTgacatttttttcggaaattggGACATCCG
CTAAATCAAATTCCCATCAGAATTTATCTTTTAAGGTATCAGTTTGAATT
TTAGTGTAGTCTAAtgtcattgggcttttccagaaaaaaaccgtatcccc
ctgttgaggagctccaaccttttgtgaattatccccttggaattccaggc
aattttaggatcataccccctggaattccgaatttttacagatttccaat
cattacccccatggaattccgcttatttttgacagatttttgtctactgc
tatggaattccactgcatttcaaaccatacccccttggaatagaaatgga
ctcctcaacagggggtgcacggtttttttctggaaaagcccatttataga
aaagtttttactttaaattggCAATTAACTCACAGTAAAAGCCcaatact
ttcacaaaaatgccattttatgcttcgGGTGTATCTTCTTGTTAAATCTA
GACTAAATTTTGATCCTAGCCTGAACGTATACCGTAAGATGATTTCCTCT
AGTTTGAATCGAAGACCTCGATAGATATACTTCCAATAAGAGACTCTTtt
tgctagaggatgagcagaagcctatagATTTTCTCAAAAAGGTACCCAGC
TGACACCCAACTTTGTTTCAACGTtcgtctaacgttatatggacgttgtg
aacgttagataaacgtcaaaaaaacattgtgtgccagttgggtaACAATA
TCCATGATTAAATGAAAAACACCATTTTTATAAGCGTGTAAATGCTTAAT
CAGCCATTCCAGAATAAGGGATACGTTGCGTCACGCGCATTCTTGACTGA
ATACCGCCAGTAGAGACCTAGGAGCGCCGCGACCCATGTACTATTTGATA
GCAACCATAGAGGGTTCAATCGGGCATAGCTCTCCAGCAATCGTGGTTGA
CATTTTCTCGGaatgaccttaatgaatgtactTCATATTTCTAAACATTC
TAAATAGGCGGACTTAAGCAAGAATTATTTAtatatatgtctttttttat
ctCATATCTAAAGATTTGACGATCCGCAACATAAAGAGGAAACAAGCAGG
AGTTTGGAAAACCGAATGGACAACTAAAGGGTTATGCCCAAGAAATTTTT
CTCTCGCTGTTCATGTGTGGTTTGATCCTCGTAAGTTATTCCATCatgat
acacccctgtctcatttcCACTGAcctaatacacccctgtctcagttcCA
CTGACctgttacacccctgtctcagttcATTGACCtgacacacccctgtc
tcagtccAACTGAcctaatacacccctgtctcagttcCACTGACctgata
cacccctgtctcagttcCACTGAActgttacacccctgtctcagttcATT
GGCCTCTCAGTCCCACTGACCtgatacatccctgtctcagttCCACTGAc
ctaatacacccctgtcttagTTCCACTGACctgatacacccctgtctcag
ttcATTGACCTGACACACTCCTGTCTCAGCTCCACTGAcctaatacaccc
ctgtctcagttaCACTGACCTGATACACCACTGTCTCAGTTCCACTGACC
TGATACACTCCTGTCTCAGTTCCACTGACCtgacacacccctgtctctca
gTTCATTGATCtgacacacccctgtctcatttcCACTGAcctaatacacc
cctgtctcagttcCACTGACctgatacacccctgtctcagttcCACTGAC
CCGGTAAAATATGCAAGTCCTAAGACCCCAATGATTCCATTTTCACCAAG
TCACGTAAGAAAGTATACTGACCACAGACGGATGCTTCTTAGACCAAATT
CATTTATAATCTATTTAATACAGTAATATTAGTGTTACAGGAGGATAACG
TTACGgggaaaaaaaataagtttgtacAATTTACCCTTCCAttctttttt
gcttattttctactttGTCTGGAATAgccgtctagcatgctagaccaCCA
CATGCTCTAACTtcccccagctggcacataacgttgtttcgacgtttatt
taacgttcacaacgtccatataacgttagatgaacgttgaaacaacgttg
tgtgtcagctgggtcaAACTACGGTCAATGCTTTGAGAAGAGAAACGGTG
GCGAAAAAAAcagaagtaaaattttctttttcattttgatagTACCACCA
ACGACCACAACAACAACTACCactacaacaacaacatcaACGACAACGAC
CACAACGACCACACCAACACCACCGACCACACCTAAACCAAAGGATCCTC
TTGAATCTGGTTCCACAAAAGCAATCGGGGCACTTTTCATGATCGCTATT
TCATGTGCTTCGGTCTTCGTTTTTTGGAAATTCTATCTTCAAAAGTAAGG
AGTCATTATCTGACTACGTTCTTCTTTTTCTATATAATACCAATTTTATA
AATTCAGGTTGAAAGTAGCATGCCATTTCACAGTTGCAAAGcataatggg
taatcaggaccactctgttggtccaaagttttgaaaattctttgaagATT
ATTGCGTATAGCCAACAGAAATCCAgtatggaggcgcaatcagtcctgat
tactcaTGATcttttcgactgtgaaatggccta
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045864-exon-scaffold_102-1491911889:532276..532552 | TCONS_00045864-exon-scaffold_102-1491911889:532276..532552 | Clytia hemisphaerica | exon |
| TCONS_00045864-exon-scaffold_102-1510915933:532276..532552 | TCONS_00045864-exon-scaffold_102-1510915933:532276..532552 | Clytia hemisphaerica | exon |
| TCONS_00045864-exon-scaffold_102-1575043694:532276..532552 | TCONS_00045864-exon-scaffold_102-1575043694:532276..532552 | Clytia hemisphaerica | exon |
| TCONS_00045864-exon-scaffold_102-1491911889:532845..533099 | TCONS_00045864-exon-scaffold_102-1491911889:532845..533099 | Clytia hemisphaerica | exon |
| TCONS_00045864-exon-scaffold_102-1510915933:532845..533099 | TCONS_00045864-exon-scaffold_102-1510915933:532845..533099 | Clytia hemisphaerica | exon |
| TCONS_00045864-exon-scaffold_102-1575043694:532845..533099 | TCONS_00045864-exon-scaffold_102-1575043694:532845..533099 | Clytia hemisphaerica | exon |
| TCONS_00045864-exon-scaffold_102-1491911889:535239..535355 | TCONS_00045864-exon-scaffold_102-1491911889:535239..535355 | Clytia hemisphaerica | exon |
| TCONS_00045864-exon-scaffold_102-1510915933:535239..535355 | TCONS_00045864-exon-scaffold_102-1510915933:535239..535355 | Clytia hemisphaerica | exon |
| TCONS_00045864-exon-scaffold_102-1575043694:535239..535355 | TCONS_00045864-exon-scaffold_102-1575043694:535239..535355 | Clytia hemisphaerica | exon |
| TCONS_00045864-exon-scaffold_102-1491911889:536368..536808 | TCONS_00045864-exon-scaffold_102-1491911889:536368..536808 | Clytia hemisphaerica | exon |
| TCONS_00045864-exon-scaffold_102-1510915933:536368..536808 | TCONS_00045864-exon-scaffold_102-1510915933:536368..536808 | Clytia hemisphaerica | exon |
| TCONS_00045864-exon-scaffold_102-1575043694:536368..536808 | TCONS_00045864-exon-scaffold_102-1575043694:536368..536808 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_102 | supercontig | scaffold_102:532276..536808 + |
Blast
The following BLAST results are available for this feature:
|
