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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045862 ID=TCONS_00045862|Name=TCONS_00045862|organism=Clytia hemisphaerica|type=transcript|length=1100bp
TTCAGGATGTGTCGATTACAAGACTTTTGATTATTGTCCTGGACAATCTA
CTACACTACACCACGCACAGAAAAAAGATTATATTTGGTTTAAAGTTATc
gcaaagcaaaaaaaaagaagcagTGAATTCGATGAAGGATTTGAAGTCAA
AAATAGCAACAGACATACTATCGAAGCTGGCAATCTACACATCAAAGACC
TTGCACCCTCTGATCATGCATTTTACTTCTATACGCGAGCATCGACGACA
TTTCTTGAATGCCCCGACTATGAAGTTAATGTATATGAAGTAAAACCATT
AATCAACAGAATCAAAGCTGAAGAAGGCGGTACAGTTGTTTTAAGATTTT
GGTCAAACATACCAATAAGAGAATTCAAACCTAAAGCTTCTAAGATATTC
AAAGTGAAGGATAAAATAATGTTTGATGGTAACAATGGGGATGAAGATAA
TTATGCACTTACAAGTACTACCAAGAGCGTTAATTTTCGGTACAGATCAG
ATGTTACACATAATTTCAAATATGCTGCACATACATATACAAATTTGACG
ATCCGCAACATAAAGAGGAAACAAGCAGGAGTTTGGAAAACCGAATGGAC
AACTAAAGGGTTATGCCCAAGAAATTTTTCTCTCGCTGTTCATGTGTGGT
TTGATCCTCTACCACCAACGACCACAACAACAACTACCactacaacaaca
acatcaACGACAACGACCACAACGACCACACCAACACCACCGACCACACC
TAAACCAAAGGATCCTCTTGAATCTGGTTCCACAAAAGCAATCGGGGCAC
TTTTCATGATCGCTATTTCATGTGCTTCGGTCTTCGTTTTTTGGAAATTC
TATCTTCAAAAGTAAGGAGTCATTATCTGACTACGTTCTTCTTTTTCTAT
ATAATACCAATTTTATAAATTCAGGTTGAAAGTAGCATGCCATTTCACAG
TTGCAAAGcataatgggtaatcaggaccactctgttggtccaaagttttg
aaaattctttgaagATTATTGCGTATAGCCAACAGAAATCCAgtatggag
gcgcaatcagtcctgattactcaTGATcttttcgactgtgaaatggccta Run BLAST on NCBI transcript from alignment at scaffold_102:531283..536808+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045862 ID=TCONS_00045862|Name=TCONS_00045862|organism=Clytia hemisphaerica|type=transcript|length=5526bp|location=Sequence derived from alignment at scaffold_102:531283..536808+ (Clytia hemisphaerica)
TTCAGGATGTGTCGATTACAAGACTTTTGATTATTGTCCTGGACAATCTA
CTACACTACACCACGCACAGAAAAAAGATTATATTTGGTTTAAAGTTATc
gcaaagcaaaaaaaaagaagcagTGAATTCGATGAAGGATTTGAAGTCAA
AAATAGCAACAGACATACTATCGAAGCTGGCAATCTACACATCAAAGACC
TTGCACCCTCTGATCATGCATTTTACTTCTATACGCGAGCATCGACGACA
TTTCTTGAATGCCCCGACTATGAAGTTAATGTATATGGTAAGATAAACGT
TATTGAAtgatcattttcaatttcaaaggaAGGGTGCAGGGATGCACGTT
CTTTTATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTTCAGTGAAAATGT
AACGTGTGCAAGCGTAAGCTGTGGCGAAATACAACGACTTGGTTAATTTC
TCACTAGACTCTCGAAGCGTCAGATCTTaaacaatagaccttatcgaagt
ttttgatttttttgaaaaagcgatgcattgtgggattgtttcgagtgtat
cacaatagaaatctcttagaaaTTCATCGAGATGATTCTATTGTAATTCA
CTCGAAACAATctcacaatgcatcacttttttataaacataaGGTCTATT
AGTCACCTGTTAATAATACAcacattttttacaagaacatttaaaaattt
tgaaaagaaattaggTGATTAAGAATCGacaagccttaaaatattcttaa
ctcgTTCTTAATATTCTTGCCATCGAAATCTTtcattcttatatagtttg
ttcttataaaacagtGTAATAATTTTAATTTGTTTCAGGATGTGTCGATT
ACAAGACTTTTGATTATTGTCCTGGACAATCTACTACACTACACCACGCA
CAGAAAAAAGATTATATTTGGTTTAAAGTTATcgcaaagcaaaaaaaaag
aagcagTGAATTCGATGAAGGATTTGAAGTCAAAAATAGCAACAGACATA
CTATCGAAGCTGGCAATCTACACATCAAAGACCTTGCACCCTCTGATCAT
GCATTTTACTTCTATACGCGAGCATCGACGACATTTCTTGAATGCCCCGA
CTATGAAGTTAATGTATATGGTAAGATAAACGTTATTGAAtgatcatttt
caatttcaaaggaAGGGTGCAGGGATGCACGTTCTTTTATAAcaatatta
aaattttttgaaacctttggatgtttctcaactttttgagttttaagcct
aaatatattcttaacatgttcttattttcgccattttttaagTATtctat
tttcctaaaaaaatgttcttaatacttGCCACATCCAAGCCTTATGTAct
tatatatagtttgtttttataaaaaaaagtgtactctaaaaaatttaatt
tccttTTTACAGAAGTAAAACCATTAATCAACAGAATCAAAGCTGAAGAA
GGCGGTACAGTTGTTTTAAGATTTTGGTCAAACATACCAATAAGAGAATT
CAAACCTAAAGCTTCTAAGATATTCAAAGTGAAGGATAAAATAATGTTTG
ATGGTAACAATGGGGATGAAGATAATTATGCACTTACAAGTACTACCAAG
AGCGTTAATTTTCGGTACAGATCAGATGTTACACATAATTTCAAATATGC
TGCACATACATATACAAGtaagttacacgttttttttttttataagaacg
tcaaaaattttcgaagccttcggatgttcttatttttttggatttgaagc
ctaaaaatgtNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcccgaagttttcctcttcgt
cggtaaaatcgctataaaatcgcttaaatttcctcattcgccgtaccaga
tataaaaagcttccgtcgtgcctgcatgttcttatatagtttgttcttat
aaaaaaaaacgtgtagtggtcagggtacctttttttacacttttatgAGT
TCCAGGTAGGGTTGCATAAAGTTGACGCTCactaatttgattttcaaaga
ggaatatgattttcatcgaataagggagttaATAAAGCATCGTTTCTTAT
TAACGGGGACTttgaatttcatcgaataaaggaGCCTATCGAATAAAATC
TGTCCCTCGTAGGTgacatttttttcggaaattggGACATCCGCTAAATC
AAATTCCCATCAGAATTTATCTTTTAAGGTATCAGTTTGAATTTTAGTGT
AGTCTAAtgtcattgggcttttccagaaaaaaaccgtatccccctgttga
ggagctccaaccttttgtgaattatccccttggaattccaggcaatttta
ggatcataccccctggaattccgaatttttacagatttccaatcattacc
cccatggaattccgcttatttttgacagatttttgtctactgctatggaa
ttccactgcatttcaaaccatacccccttggaatagaaatggactcctca
acagggggtgcacggtttttttctggaaaagcccatttatagaaaagttt
ttactttaaattggCAATTAACTCACAGTAAAAGCCcaatactttcacaa
aaatgccattttatgcttcgGGTGTATCTTCTTGTTAAATCTAGACTAAA
TTTTGATCCTAGCCTGAACGTATACCGTAAGATGATTTCCTCTAGTTTGA
ATCGAAGACCTCGATAGATATACTTCCAATAAGAGACTCTTtttgctaga
ggatgagcagaagcctatagATTTTCTCAAAAAGGTACCCAGCTGACACC
CAACTTTGTTTCAACGTtcgtctaacgttatatggacgttgtgaacgtta
gataaacgtcaaaaaaacattgtgtgccagttgggtaACAATATCCATGA
TTAAATGAAAAACACCATTTTTATAAGCGTGTAAATGCTTAATCAGCCAT
TCCAGAATAAGGGATACGTTGCGTCACGCGCATTCTTGACTGAATACCGC
CAGTAGAGACCTAGGAGCGCCGCGACCCATGTACTATTTGATAGCAACCA
TAGAGGGTTCAATCGGGCATAGCTCTCCAGCAATCGTGGTTGACATTTTC
TCGGaatgaccttaatgaatgtactTCATATTTCTAAACATTCTAAATAG
GCGGACTTAAGCAAGAATTATTTAtatatatgtctttttttatctCATAT
CTAAAGATTTGACGATCCGCAACATAAAGAGGAAACAAGCAGGAGTTTGG
AAAACCGAATGGACAACTAAAGGGTTATGCCCAAGAAATTTTTCTCTCGC
TGTTCATGTGTGGTTTGATCCTCGTAAGTTATTCCATCatgatacacccc
tgtctcatttcCACTGAcctaatacacccctgtctcagttcCACTGACct
gttacacccctgtctcagttcATTGACCtgacacacccctgtctcagtcc
AACTGAcctaatacacccctgtctcagttcCACTGACctgatacacccct
gtctcagttcCACTGAActgttacacccctgtctcagttcATTGGCCTCT
CAGTCCCACTGACCtgatacatccctgtctcagttCCACTGAcctaatac
acccctgtcttagTTCCACTGACctgatacacccctgtctcagttcATTG
ACCTGACACACTCCTGTCTCAGCTCCACTGAcctaatacacccctgtctc
agttaCACTGACCTGATACACCACTGTCTCAGTTCCACTGACCTGATACA
CTCCTGTCTCAGTTCCACTGACCtgacacacccctgtctctcagTTCATT
GATCtgacacacccctgtctcatttcCACTGAcctaatacacccctgtct
cagttcCACTGACctgatacacccctgtctcagttcCACTGACCCGGTAA
AATATGCAAGTCCTAAGACCCCAATGATTCCATTTTCACCAAGTCACGTA
AGAAAGTATACTGACCACAGACGGATGCTTCTTAGACCAAATTCATTTAT
AATCTATTTAATACAGTAATATTAGTGTTACAGGAGGATAACGTTACGgg
gaaaaaaaataagtttgtacAATTTACCCTTCCAttcttttttgcttatt
ttctactttGTCTGGAATAgccgtctagcatgctagaccaCCACATGCTC
TAACTtcccccagctggcacataacgttgtttcgacgtttatttaacgtt
cacaacgtccatataacgttagatgaacgttgaaacaacgttgtgtgtca
gctgggtcaAACTACGGTCAATGCTTTGAGAAGAGAAACGGTGGCGAAAA
AAAcagaagtaaaattttctttttcattttgatagTACCACCAACGACCA
CAACAACAACTACCactacaacaacaacatcaACGACAACGACCACAACG
ACCACACCAACACCACCGACCACACCTAAACCAAAGGATCCTCTTGAATC
TGGTTCCACAAAAGCAATCGGGGCACTTTTCATGATCGCTATTTCATGTG
CTTCGGTCTTCGTTTTTTGGAAATTCTATCTTCAAAAGTAAGGAGTCATT
ATCTGACTACGTTCTTCTTTTTCTATATAATACCAATTTTATAAATTCAG
GTTGAAAGTAGCATGCCATTTCACAGTTGCAAAGcataatgggtaatcag
gaccactctgttggtccaaagttttgaaaattctttgaagATTATTGCGT
ATAGCCAACAGAAATCCAgtatggaggcgcaatcagtcctgattactcaT
GATcttttcgactgtgaaatggccta
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045862-exon-scaffold_102-1491911889:531283..531569 | TCONS_00045862-exon-scaffold_102-1491911889:531283..531569 | Clytia hemisphaerica | exon |
| TCONS_00045862-exon-scaffold_102-1510915933:531283..531569 | TCONS_00045862-exon-scaffold_102-1510915933:531283..531569 | Clytia hemisphaerica | exon |
| TCONS_00045862-exon-scaffold_102-1575043694:531283..531569 | TCONS_00045862-exon-scaffold_102-1575043694:531283..531569 | Clytia hemisphaerica | exon |
| TCONS_00045862-exon-scaffold_102-1491911889:532845..533099 | TCONS_00045862-exon-scaffold_102-1491911889:532845..533099 | Clytia hemisphaerica | exon |
| TCONS_00045862-exon-scaffold_102-1510915933:532845..533099 | TCONS_00045862-exon-scaffold_102-1510915933:532845..533099 | Clytia hemisphaerica | exon |
| TCONS_00045862-exon-scaffold_102-1575043694:532845..533099 | TCONS_00045862-exon-scaffold_102-1575043694:532845..533099 | Clytia hemisphaerica | exon |
| TCONS_00045862-exon-scaffold_102-1491911889:535239..535355 | TCONS_00045862-exon-scaffold_102-1491911889:535239..535355 | Clytia hemisphaerica | exon |
| TCONS_00045862-exon-scaffold_102-1510915933:535239..535355 | TCONS_00045862-exon-scaffold_102-1510915933:535239..535355 | Clytia hemisphaerica | exon |
| TCONS_00045862-exon-scaffold_102-1575043694:535239..535355 | TCONS_00045862-exon-scaffold_102-1575043694:535239..535355 | Clytia hemisphaerica | exon |
| TCONS_00045862-exon-scaffold_102-1491911889:536368..536808 | TCONS_00045862-exon-scaffold_102-1491911889:536368..536808 | Clytia hemisphaerica | exon |
| TCONS_00045862-exon-scaffold_102-1510915933:536368..536808 | TCONS_00045862-exon-scaffold_102-1510915933:536368..536808 | Clytia hemisphaerica | exon |
| TCONS_00045862-exon-scaffold_102-1575043694:536368..536808 | TCONS_00045862-exon-scaffold_102-1575043694:536368..536808 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_102 | supercontig | scaffold_102:531283..536808 + |
Blast
The following BLAST results are available for this feature:
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