TCONS_00045847 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045847
Unique NameTCONS_00045847
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1517

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045847 ID=TCONS_00045847|Name=TCONS_00045847|organism=Clytia hemisphaerica|type=transcript|length=1517bp
TCATATCGATCATACGTGCTCCCTCTCAAGagTATGGCGTATGATCCAAG
GAGATGGCTAAATTACGACACACTCGATGATCAAAACAATGGAGACCAAA
ACTATTACCAAAAACAAGAACCAGAAGATCAATACAGAAGCTTTGATTAC
CAACCAACTACCACCTCAAATACATACAAAACACAAGATTTTTATAATCC
TACCCCAGATCCAGAAAATATTTATACACCATCATTCAATGGTAATGCTT
ATCAACAGCCAAACAATGGATCTATTGTTGAGAAGAAACGAAAAGTTGAC
GAGTATGACCCAATGGCTCCCAGTTTTAGTGGCTCCTCTACCAATCAGCC
ACCCACACCAAAGAAAGAGCAACCGGATCCAAGAAAACTCGGCCATTTTA
TCAGCATGCTTCAAAAGATGATTAGGCCTATACCATATGATTACAAGAAG
ATGCTACCTTATGATATCATTTGCCAGTTAGCACATGCCATGTTGGATGG
AACTGTTTTTGAAATAGCCAATGGTTTGAAGGACATTCAAAAAATAACAG
AGAAGAGCTTACATGCAAAAAGAAGCAAGCTTGTCAACGAACATAAAGAT
TTTCAATGAACGAGTGGATAAAGAACTGACTCAAATGGATCAAAAGATTG
TATTGGACTTGGATCAACAGATATCGGATCAACAAGTCACTTTGGAGCGT
GCCGGGTTACCATTGTTCTTCATCACCAATAACCCTCAAGAAATTCGTAT
ACAAATGTACATCTTGGAATTTATTGTCGGACTATCAAATTCTCACACAA
AACCATCTTGAGGGGAGGAGATTCGAAATATTGTGAAGAGAATTCGTTGG
AAAGTAACTTGGTCGCACCGCACCGCCCTCGCGGTTTGTGGAAACGAGGC
TTAAAGACATGACATTGGCTCAGACATGACAAGGAAGAACCGTTGCCATC
CATTCAGATGAAACTGTAATCCATTTTTTGGGGAATATAGTAACTGTAAA
CTGTAAATTGAATTATTAACATTGTTGTGTTTTATGATATACCCAGATAC
GTAATAGAATAAAAAAGGACATGGGCGTGCTATTTTCACTTGGAATACAC
AACACTCACAAAATGTTGGAGTCCAAGAACGTTTAAAGAAAGAGCCAAAG
GTTACCTGCATGTCAGTGCATGTAAAACCTCCACTGTTTCCTGCTGATTA
ACAGGAAATATCCAGGACTGTTATACTTATGGAAACCAGTAAAATAGGAC
TACCTGGAGATTGAGCCCACAGTTTACCGCTGGGATAATTGACCATTACG
TCATAAGTTAACCAGGATATTGTTGttattttgaggatttttttcctttt
aggaaatatgttttgtttctagctgttttctttttaaaggttttaacaAT
TTACGCTGCTTGAATCTAGTATATTTTGTAAGGAATTTTGTAACGGTTAT
TTTCAGTCAGAAACATGGAGAAGCTGTGATCTCGaatccaatttttcttt
atcTCGTGATCATTCCG
Run BLAST on NCBI

transcript from alignment at scaffold_102:365155..376971+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045847 ID=TCONS_00045847|Name=TCONS_00045847|organism=Clytia hemisphaerica|type=transcript|length=11817bp|location=Sequence derived from alignment at scaffold_102:365155..376971+ (Clytia hemisphaerica)
TCATATCGATCATACGTGCTCCCTCTCAAGGTATGATGATTTAATTTGAC
CTAATCTGACCTTGTCTTGAGAATATGTCTCCAATTGGGGTGGCTGGGTT
GGTTGTAACATGGGATTGTgtatagaccttttttcaaagaggccaccctg
ttgaataattatgtagtccagcagaaaaacaatgatgaaCCATGAATAAT
Tactacaatatgcatgatacagtaattatgcatggatatatcattgtttt
tatggctggactacataattattcaacatgacatcctctttgaaaaaagg
tctatttttactttttactgtTAAATcactttgacaaaaaatttctttta
atacTTCCACCAAATTTATCAACCACACTTTTTCTGTCAAAAAATAGATA
CGGTATATGTCTAGAAGAGCTGCATCTGACAAAAGTATTCAACCAATTCA
CGTCATCTTTTAGTTTCGTTAAAACCTCTGGTTAAACAGTTACATCAATN
Nagagaacttcataattccccaaacaacattacattactatctcaaactc
ccatcacataaattttacaattacgtcagagtagactacgcttgccaccg
aagaggtttatttggaaagggtagttatattttattgtttgcttcttttt
taaagatttgccgggttggaaaagtatgaatttctttgtacatattttac
ctaccccaaatatttaggaggctgagttttaaacgaatcgtcaagttgaa
acgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaatgtatcaaggt
ctgttttatttaccccctggtgacttaacaaaagaaacttaactcgatgt
tacaatccaattattgaaagtttgtctcggcctttttataatgagcgaga
catacgttctctgattacgcaattttcatattgacattttcgaggcattt
tgatgtaactgttaaACCCCGTTAAACCCCTCTCTCGCTCAAGGGACTTT
TAACTAACAGCCTGTGCAATGAGATGAATATATGTTAGCAAGAGCCTGGT
TTCTAAGATTTAGTTGATGTAAGTGGAGTGTGTCGTGCCTGTGTTGTGTT
CATTACCGTGAGTATGGTCCTAATCCGAGTATTCCGACACCCCAAATAAC
TAAAAACTGttataaaaaattctatgtttacaaaccttccttctccaagt
tgaacgatagaCTATTGCAAtgactctcgaaacaaaacatctaacattAT
GGCTATAATAATGTCAaggtcaattaatgtgatcaaaaaagtgtaggacc
ctcccggcgctccggaaactTCCGGAGTTTTCCggagcagctaaaaaaac
actatttttctctccgGAAAGTTCCGGAGCTCTTCCAGCGCTTCCGGAGC
AAGTGATTTTAACATGttctaaaaaaacatttaaacggctagttcgaaac
acgggtcacgggtccgggtccggggcacgggttacggggcacAGGTCACG
GGGCATGGAGTGATCGGGCAGCTCtgatcaaagtaattcaaacagaaaat
gttttaaaaacgcaaaaaattatcgaaaaaatctATTTGAAGGTGTTTTA
TCCACGAATGACTATAACCACGTCCTTTCCACGTGTTTTCGAAGTTGCGT
CGTGTacaacgcagaccagaaaacaccgcaacatattacatacatataaC
AAGCTTATATTATCAATAAATACACTTTTAGTGCtatatgcatgttatat
gttatacgtaagtaatatacatattacaattcccaTCGCCTGAAAACCAA
GCTTTCTCAAGAAAATAATAGTCCGCctattgttaaatcatatctcatta
tatcccctccatcaccttcagtatgaatataattttaatggataataacg
tAAAAATGATGGTATTATAAATGTGTCAGTATTTTCCAcctaccattatg
aatttttaataaaaatgacgtaattatactcatatctctaaaaccactat
cttgcagcatttaatcgttttaaaacatgtcaatctatatccagtcacat
aattagcatcctattgagtatgaaaaaatattttgctgtaaattggttca
gaggccttatatttcatgattttgacaatatttctgtcattcaatatcat
tttgtcaaaatttgtgggtgacatattatttaaaaattctcatgataata
ctattcgtatataattgtttcagacaTACTATACAATGGTAGTAgtacta
ttatatgtgttatgtagtacgtgttatgaacgaattatacgtcatgatat
cgttttattttttccggtctgtaatttgtatgccCCGTGACAGTCTTTGA
GGATGATGGTTCAcccattaatgaaattgaatttgtcacattatATTCGA
AAGCATagttgaaatttcgaaaaaataaaaaaaacgtgagGTTTCAGTGA
GTCACATGAGTCGGCGCTATCGTAATAACATTGCGGATATCTTGCTCCAG
AACGTTCCGGAGTTCCGGTGCAGACCAATCGGCAAAAATCGTGCTCCGGA
ACACGAAAAAAACACCACTTTTTGCTCAGGACGTTTCCagagcgccggga
gggtcctaaaagtgtgagttgtaaaaatgattacctctattattctgaat
ccagCTGAATCTGTTGCTCATGTTTAAGATGTTAACAATTTatgtaatga
aaaattattttttgtataagaagcacaattattgtaatttggttcaaatc
aatgtgtatcaaatctttcagtttagttgacactttggtatcttcattgc
gtcacagtgaaaggtttgtttttattttattttgtatctTCCTATCTTTT
AAAGACCatcagatttaggcagggctgttggaTTTAGGATCACTCACGGT
ATAATAAAGGAAGGCGGACATGAATCGCTCAATAAAATTTAGTGCATATA
TTTAGAAAACCACCCCCGTGTAAAGTTAACAGATCTGAAAATATGACGCT
agattttatggatttttgtaGATATCTGGTTTGCAGTACGCGCGTGTTTC
ACTacggaatttttttcatatttcaatttaaaagcctacttggtgtgaaa
gagaaatcatgCATTTTTTGATACGCCGTTCATTGTCGTTCATTTAtatt
ggaggttcggtgaaatggtggccgaattgccatcccatgttttgtcagat
agtcccaagttaaagcagttgacatTAAAAGGGCTAGTtcaaaacgcagg
tcacaggtcagtgctgacaggtcagctttaattactgtaaaacaccaagg
aaatgtttgaaaaaaaattgtcaaaaactgtcaaaaatatcattctgaag
gtatatattttattgatctagaacttTTTTAAAGGTCAATCTCTATCCAC
CATGTGTTTAGTTGTGCTTACCACGTGCTTTCGCAATATGTGCTGTGTAT
AACACAGACCTGTAATACTTATTATATTTAATTGTAATTGTATATTACAC
ACATATCACACATAAATagcagttatcttttcaatgttatgtGCATGTTA
CATATTTTATACacgtgttaaaatattattaatcTCACCTTTAACCTCAC
TTCCcgacaggaaaatagctattttgcAATCGCTATATCATACCTCCTGC
AGCACCTTGGGTCTGataacaaaaattaatgaaaatagcGTCAAAAGggt
tatattttataaatatttcaatatttttatcccctgctttgtCATAGTTT
TATAAGGGGGGTACGATGGCCCTGAAGGCTCAtaatttctcttcaaaaaa
cAACCGGAGTTTCCCAAAATCAAGCTGGAGTTTCCCAAATTTTAGACAGA
GTTTCCCAAAACCAAGCCAGAGCTTCCCAGATTAAAAGGGGGTTTCCCAA
ATTTTAGATGGAGTTTCTCAAATACACGGGCTGTAAAATTATATCGAATC
AAGtacaatgcagtcaaaacatgtgattactcaaaaaagttcacgtgatc
tTATTCCCATGTTAATTAATTGctttacagctgataactttgttaatagt
gtcaataaattcgaaccaatcagaaataaatgtcatgtaacaagcacata
aaaatgtagaaactaaaaaaaatttgggaGACCCCCAGCTTGATTTTGGG
AAACTCCGTCTAAAGTTAGAGAAACTCCGGCTTGGTTTTGAGAAACTCCG
TTTAAAATTATTGGGAAACTCCGTCTAAAATTTGGGAAGCTCTGACTTGG
TTTTGGGAAACTCCGTCTAAAATTTGGGAAACTCCGGTTGTTTTTCGAAG
AGAAATTTTGAACCTTCAGGGCCATCGTAGGGGGagttttttcttcagaa
aatgggaaaagtgtgggcaaaatttttttcaaaattctaggGTGGGGGGA
AACAAAAGTAAGGGGAGAAAAAATAGCTCCAAAAAGTCTAGGTTGGGGag
aaaaaatctgaggaaaaaaattttctgttctcTGGTGTCaaacataaaac
ataaaatatatctGTTCAACTTCAAGCTAAAAACATGTAATAGTGTTTTA
TATTTGAGGTGATGacaatttacattttttctttgtatatagGGACGAGA
TAACATGAATAGAAGCAGTATATTGGGGCAGANCGAGGTGGTGacaattt
acattttttctttgtatattaTAGGGACGAGATAACATGAATAGAAGCAG
TATATATgggacttttttcaattttcaagggagGGGAACCAACCGACTAG
GACACTatgtttgtatttttgatgaaaatgacgtcatcattttcgtatct
ctaaaacagctgtctaggagcatttaatgttttcaaaacatatCAATTTG
CACTGTTGACCTattgacctgttgacctgtgacctgcctTTTGAACTAGC
CggaaaacaattgaaattcaacaacaacATTTTTAGTTCAAGGTGACTCC
TGATCTTTGAGCTTTGGATGTTTAATATCATACATAGGATGGGATCACTG
TATTGATATTTTGAATGTATGTTCTTGACTCTACAGCATTCAAAGCCAAC
AAacagtaaaaatgaaaaatgaaaatctaaatttgTAGAAAAGAAATCTC
CAACCAAAACCTCCAGTAAAATAGTACTTAAAACTGACCATCGTATTCAG
CTGCAGTGCAGTTAATAAATAAAAGATGGATCAAAGCTGTTTTTGAAGCT
CAAGAATTTATCTTTCTTTTAATATAAACTAGAGGAGTGTACTATatatc
ttttattttctttagagTATGGCGTATGATCCAAGGAGATGGCTAAATTA
CGACACACTCGATGATCAAAACAATGGAGACCAAAACTATTACCAAAAAC
AAGAACCAGAAGATCAATACAGAAGCTTTGATTACCAACCAACTACCACC
TCAAATACATACAAAACACAAGATTTTTATAATCCTACCCCAGATCCAGA
AAATATTTATACACCATCATTCAATGGTAATGCTTATCAACAGCCAAACA
ATGGATCTATTGTTGAGAAGAAACGAAAAGTTGACGAGTATGACCCAATG
GCTCCCAGTTTTAGTGGCTCCTCTACCAATCAGCCACCCACACCAAAGAA
AGAGCAACCGGATCCAAGAAAACTCGGCCATTTTATCAGCATGCTTCAAA
AGATGATTAGGCCTATACCATAGTAAGAtcgataaatatttttgttgtct
tggtatatatttttatgCTAACGTCAGTAACATAGTTTGTTTTGTGTTTG
GGATTAATCTTTGCCATATGCGGCTAAAGATAAACCATTACTCAGAATTT
TATGCGTGTTGTGCTTTTGATGTTTGAGATATTATGGGGCTCTATTTAAA
AAATAGAACAAGATGTACAAAGGACTCACTGTTGATGAATGTTATTACTT
TTCGCTTTGACATTCtcaaaaatcttttgctttttttaagaatgtttgca
aaaagattttgcaataaaaaattgaaacaaattgTTGATGGTTTTTGGCT
TTTTATATGTTCAGTGATTACAAGAAGATGCTACCTTATGATATCATTTG
CCAGTTAGCACATGCCATGTTGGATGGAACTGTTTTTGAAATAGCCAATG
GTTTGAAGGACATTCAAAAAATAACAGAGAAGAGCTTACATGCAAAAAGA
AGCAAGCTTGTCAACGAACATAAAGGTAAAAACTCATGTCAGGGCCATTC
CAAGAAAATGTTAACCCTATTGTAGTCTATGCCCGATATTGAACCATCTC
GTATGAAGCGCTCCTAAAACCCTCCCTATTGGTGTTTGCAGTTAGTAAAA
AAGCGTGAAAGAACGTACCTCTTCATCTGGAATAGCTACATAGTTGTTGA
GCTTTCAAAATCCTTTTCGTATTtctttcagttttcattttgtaattaaa
aaacgAAATCTAGTACATAAACAAATGGAAATTGATTgcgacaatatcat
gtatacgaATGTCAAGTATATTGTTTATTCACTACCATAAGATGGATCAG
AAATGATCAGGGGAACCTTATGTTTATGATATTCTCACATTCATGCTCTT
TTAAGAGCATTTCTTAAATGGTTTTcataatatctatttttctcTTTAAC
TTTTAAGCTATGAAGCAAGAGATCAAGAAGCGACACAAAACCGAGATTGA
GCATTCACAGTCAAGACCACATCAGATTCTGGTTTATGAGAAAAAGCATG
CTGAAGAGCTGAAGGTAGGAAGAAGTGGTCCACTGGTAGCCTCCTAACCG
GATTGTTGTGGGTTTGAGCCCCATGCAAATTAACCATGTAACGAAGTCAC
CTCTCGCATCACTAACACTGGCGGGCGGCTGGCTACGGAAAGAACCAACC
CTTAGGGTGGATGTGAGTTCAGTTCCTAAACATAAATCAAGTacataaaa
tgaaataaaatcagataaaataaataaactagGGTAACTCTCCGGAAGCT
AAAAATGACTGACTAGATTGATAGTAGGAATGCTTTAAtaggattttttg
aaatttagtacCCCAGCTCAATGTtggtattgtcattttataatggATTA
TATTGAAACCTACATTTATTTTGCTACCCACCAACGTTGGTGGAGATAGC
TTACTGCATTATATGAAAGTTTTAAGTATAATTATAAATTAGTGTATTGG
AGGGGTGATCCAACATTACTAGAAAGGCTATGGATATGagattattttta
tataaagtcgTAGATCTCTAAGTCAGTTatttgttttttctgctcaGATT
TTCAATGAACGAGTGGATAAAGAACTGACTCAAATGGATCAAAAGATTGT
ATTGGACTTGGATCAACAGATATCGGATCAACAAGTCACTTTGGAGGTTC
ATAGTTTTTTCTGGAAGTCTTCTTTTAACAGCTCTTATTTTTATTGTATT
GTTTAGCGACCGTAGTGNGTCTTATCTGGAAGTCTTCTTTTAACAGCTCA
TATTTTTATTGTATGTTTAGCGAACGTatctcagtggtagagcatccggc
tagccgggtcataccaaatattctcaaaatggtacttaaatcctctctgc
ttgatgctcagcaattaagagaaggatcaagggtaagtgaagaaatccag
ggagaaagagtgacgccctcccctacctATACTACAAGCAGGACAATAGT
TTTGGTGGTGGAATGAGGTGCTCTGTGATCAGTAGCGTAGCTAATAGGAA
TGCCAAATTCGTATTGGAAAAAGCGAATTGTGTTATAAAAATCTATTCTG
CTCAAATTCTGCACaactcttggctacgctactacTAACGTCACATGTTC
CTAAGATTATTTAGTTTGACCTGTCTCTGGTTTCTTTTTTCGTCCAAACA
GGGAGTGTTGAAATatgtttgaaataaatatatataattaatatttttga
aactgTTCGCAAAATAGTAGTGTTTCAGCAAAGAGACGAACTTTTTatcc
aaaaatccaaatttgccCTCGTTTgagtacttttttatttttcctgagta
aaaagacaccaaagaTCCTCGTCTTTCAATTACTCCTAAAACTTGAAGTG
TTGTTGCAAAAAACTACTTCagtatcaaaattaattttaacgGATTTTTT
TTGGGATTGAGTAAATGTCGTTTAAAATGGAGGCcctcaaaaaagttttg
atacATTTCTAGAGAAGTGTGTTTATATGGATAAACTCTACCCgatcaaa
aaaaaaagcaacaaaagaTCGTTCTTTCTTTTGTATAGCGTGCCGGGTTA
CCATTGTTCTTCATCACCAATAACCCTCAAGAAATTCGTATACAAATGTA
CATCTTGGAATTTATTGTCGGACTATCAAATTCTCACACAAAACCATCTT
GAGGGGAGGAGATTCGAAATATTGTGAAGAGAATTCGTTGGAAAGGTATT
TATCCTTTATTTCGTTTGAGTTCGTTTTCTTTTATTCTATACATTGGCTC
ATGACAAATCATGAACAAATTGAGGCTGTTCATTTGATTGTTAAAATAAC
TCGGGGAGACAATGATACGATATTGGATTGGATAACATTTAAGGGCAAAA
GTTGCTGATGTAACCAAAAATATTCTCCTTGGAAGTAACGCTACGTTTGA
TCGTTGGGAATATGCTCTGTTGAGGTTGCATTTGGTAATCGAATGAAAGA
CACTTACGAAATGAATATAATAATTCATCACAGAGGCGGTACATCATTCA
CAAGAGCTTTGAGAAATCATTATTTTCACGTGCTTTCTAAAACCGGGTTT
CCACAAACCCCGCGAACGGTTGGGCGCGGTGCGGTGCGATCAAAATTTCC
TTTTATAGCTCATTGACGTCacgaatgaattttttttgtacaCAAAGTGT
GAGCTCTATCGAGCGCAACTGAGCTCTTTTGGgagctgaaaattttcaac
tccCAAAAGCGTTCTCTGCGACCAGAATTTGATGAACCAATCAGAAGAGA
GAAAATCTGCTGATTAAGcaaataaaatatgaaaatgtacAGATTGTGCG
TAAATCGATAGTCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTCTATTGGCCTCTCGCT
CTGTGGAAATTAAACCACGTTCGCGAGGTCTCTACGACCAGATTCTATTT
ATAGTAACTTGGTCGCACCGCACCGCCCTCGCGGTTTGTGGAAACGAGGC
TTAAAGACATGACATTGGCTCAGACATGACAAGGAAGAACCGTTGCCATC
CATTCAGATGAAACTGTAATCCATTTTTTGGGGAATATAGTAACTGTAAA
CTGTAAATTGAATTATTAACATTGTTGTGTTTTATGATATACCCAGATAC
GTAATAGAATAAAAAAGGACATGGGCGTGCTATTTTCACTTGGAATACAC
AACACTCACAAAATGTTGGAGTCCAAGAACGTTTAAAGAAAGAGCCAAAG
GTTACCTGCATGTCAGTGCATGTAAAACCTCCACTGTTTCCTGCTGATTA
ACAGGAAATATCCAGGACTGTTATACTTATGGAAACCAGTAAAATAGGAC
TACCTGGAGATTGAGCCCACAGTTTACCGCTGGGATAATTGACCATTACG
TCATAAGTTAACCAGGATATTGTTGttattttgaggatttttttcctttt
aggaaatatgttttgtttctagctgttttctttttaaaggttttaacaAT
TTACGCTGCTTGAATCTAGTATATTTTGTAAGGAATTTTGTAACGGTTAT
TTTCAGTCAGAAACATGGAGAAGCTGTGATCTCGaatccaatttttcttt
atcTCGTGATCATTCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029302XLOC_029302Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045847-exon-scaffold_102-1491911889:365155..365184TCONS_00045847-exon-scaffold_102-1491911889:365155..365184Clytia hemisphaericaexon
TCONS_00045847-exon-scaffold_102-1510915933:365155..365184TCONS_00045847-exon-scaffold_102-1510915933:365155..365184Clytia hemisphaericaexon
TCONS_00045847-exon-scaffold_102-1575043694:365155..365184TCONS_00045847-exon-scaffold_102-1575043694:365155..365184Clytia hemisphaericaexon
TCONS_00045847-exon-scaffold_102-1491911889:370470..370876TCONS_00045847-exon-scaffold_102-1491911889:370470..370876Clytia hemisphaericaexon
TCONS_00045847-exon-scaffold_102-1510915933:370470..370876TCONS_00045847-exon-scaffold_102-1510915933:370470..370876Clytia hemisphaericaexon
TCONS_00045847-exon-scaffold_102-1575043694:370470..370876TCONS_00045847-exon-scaffold_102-1575043694:370470..370876Clytia hemisphaericaexon
TCONS_00045847-exon-scaffold_102-1491911889:371219..371379TCONS_00045847-exon-scaffold_102-1491911889:371219..371379Clytia hemisphaericaexon
TCONS_00045847-exon-scaffold_102-1510915933:371219..371379TCONS_00045847-exon-scaffold_102-1510915933:371219..371379Clytia hemisphaericaexon
TCONS_00045847-exon-scaffold_102-1575043694:371219..371379TCONS_00045847-exon-scaffold_102-1575043694:371219..371379Clytia hemisphaericaexon
TCONS_00045847-exon-scaffold_102-1491911889:372452..372550TCONS_00045847-exon-scaffold_102-1491911889:372452..372550Clytia hemisphaericaexon
TCONS_00045847-exon-scaffold_102-1510915933:372452..372550TCONS_00045847-exon-scaffold_102-1510915933:372452..372550Clytia hemisphaericaexon
TCONS_00045847-exon-scaffold_102-1575043694:372452..372550TCONS_00045847-exon-scaffold_102-1575043694:372452..372550Clytia hemisphaericaexon
TCONS_00045847-exon-scaffold_102-1491911889:373443..373599TCONS_00045847-exon-scaffold_102-1491911889:373443..373599Clytia hemisphaericaexon
TCONS_00045847-exon-scaffold_102-1510915933:373443..373599TCONS_00045847-exon-scaffold_102-1510915933:373443..373599Clytia hemisphaericaexon
TCONS_00045847-exon-scaffold_102-1575043694:373443..373599TCONS_00045847-exon-scaffold_102-1575043694:373443..373599Clytia hemisphaericaexon
TCONS_00045847-exon-scaffold_102-1491911889:376309..376971TCONS_00045847-exon-scaffold_102-1491911889:376309..376971Clytia hemisphaericaexon
TCONS_00045847-exon-scaffold_102-1510915933:376309..376971TCONS_00045847-exon-scaffold_102-1510915933:376309..376971Clytia hemisphaericaexon
TCONS_00045847-exon-scaffold_102-1575043694:376309..376971TCONS_00045847-exon-scaffold_102-1575043694:376309..376971Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_102supercontigscaffold_102:365155..376971 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.5635	9.02294	6.71196	4.35933	2.90919	2.7277	2.89328	2.63271	2.44809	1.87186	2.40457	3.30493	1.73464	2.71001	3.43743	2.63578	4.26058	3.45157	1.64406	1.64924	3.76903	3.18426	4.27684	4.12449	2.90456	3.56066	0.559571	1.16868	1.65757	1.68767
Blast
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BLAST of TCONS_00045847 vs. Swiss-Prot (Human)
Match: DGCR6 (Protein DGCR6 OS=Homo sapiens GN=DGCR6 PE=1 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 1.651e-23
Identity = 35/107 (32.71%), Postives = 61/107 (57.01%), Query Frame = 2 
Query:  572 EASLSTNIKIFNERVDKELTQMDQKIVLDLDQQISDQQVTLERAGLPLFFITNNPQEIRIQMYILEFIVGLSNSHTKPS*GEEIRNIVKRIRWKVTWSHRTALAVCG 892
            +A+    ++    R+ +E   MDQKIVL+LD++++DQQ TLE+AG+  F++T NPQE+ +QM +LE I                    ++++ +  W+ + AL + G
Sbjct:  116 QAAQQRELEAVEHRIREEQRAMDQKIVLELDRKVADQQSTLEKAGVAGFYVTTNPQELMLQMNLLELI--------------------RKLQQRGCWAGKAALGLGG 202

HSP 2 Score: 56.9954 bits (136), Expect = 1.651e-23
Identity = 31/67 (46.27%), Postives = 47/67 (70.15%), Query Frame = 1 
Query:  397 FISMLQKMIRPIPYDYKKMLPYDIICQLAHAMLDGTVFEIANGLKDIQKITEKSLHAKRSKLVNEHK 597
             +S LQ +++ +P  +++ L Y  +  LA A+LDGTVFEI  GL +IQ +TEKSL+ +R +L NEH+
Sbjct:   24 LLSALQSLVKELPSSFQQRLSYTTLSDLALALLDGTVFEIVQGLLEIQHLTEKSLYNQRLRLQNEHR 90
The following BLAST results are available for this feature:
BLAST of TCONS_00045847 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DGCR61.651e-2332.71Protein DGCR6 OS=Homo sapiens GN=DGCR6 PE=1 SV=3[more]
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