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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045845 ID=TCONS_00045845|Name=TCONS_00045845|organism=Clytia hemisphaerica|type=transcript|length=3082bpRun BLAST on NCBI protein sequence of TCONS_00045845-protein >TCONS_00045845-protein ID=TCONS_00045845-protein|Name=TCONS_00045845-protein|organism=Clytia hemisphaerica|type=polypeptide|length=386bp MKNLICLLLVITLYAITDARTIKEFDLKGFLQRVIKTNLEDAQNPWKIGERun BLAST on NCBI transcript from alignment at scaffold_102:365078..401450+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00045845 ID=TCONS_00045845|Name=TCONS_00045845|organism=Clytia hemisphaerica|type=transcript|length=36373bp|location=Sequence derived from alignment at scaffold_102:365078..401450+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_102:365078..401450+ >TCONS_00045845 ID=TCONS_00045845|Name=TCONS_00045845|organism=Clytia hemisphaerica|type=CDS|length=6966bp|location=Sequence derived from alignment at scaffold_102:365078..401450+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00045845 vs. Swiss-Prot (Human)
Match: PRSS8 (Prostasin OS=Homo sapiens GN=PRSS8 PE=1 SV=1) HSP 1 Score: 163.696 bits (413), Expect = 1.826e-43 Identity = 91/269 (33.83%), Postives = 136/269 (50.56%), Query Frame = 2
Query: 1580 GLCGETLACGVAERRGSKADNPIVGGEDAKKGHYPWQAAIYFDGSFLCGGSLIDNKHVLTAAHCFKYLSTDLTLYKIVLGEHNRDADEGTEEERQVTRITQHESYQYESDTHDVAIMEMNKEVVFGADINAICLPNENEVLREGTKCFMSGWGKLHSGGSAVT--RLQHVALPIVNRQHC-----VERNTFNSHTVNDRMICAGYNDGMNYQSGCHGDSGGPLACQQTDGSWKLYGVTSWGSPQCNGLNRYTVFARVSKYTKWIKGQTS 2365
G G CGVA + I GG A G +PWQ +I ++G +CGGSL+ + VL+AAHCF Y++ LG H D+ + + I H SY E D+A++++++ + F I ICLP N G C ++GWG + S +T LQ + +P+++R+ C ++ H V + M+CAGY +G + C GDSGGPL+C +G W L G+ SWG C NR V+ S Y WI+ + +
Sbjct: 29 GAEGAEAPCGVAPQAR------ITGGSSAVAGQWPWQVSITYEGVHVCGGSLVSEQWVLSAAHCFPS-EHHKEAYEVKLGAHQLDSYSEDAKVSTLKDIIPHPSYLQEGSQGDIALLQLSRPITFSRYIRPICLPAANASFPNGLHCTVTGWGHVAPSVSLLTPKPLQQLEVPLISRETCNCLYNIDAKPEEPHFVQEDMVCAGYVEGG--KDACQGDSGGPLSC-PVEGLWYLTGIVSWGD-ACGARNRPGVYTLASSYASWIQSKVT 286 The following BLAST results are available for this feature:
BLAST of TCONS_00045845 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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