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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045839 ID=TCONS_00045839|Name=TCONS_00045839|organism=Clytia hemisphaerica|type=transcript|length=1876bpRun BLAST on NCBI protein sequence of TCONS_00045839-protein >TCONS_00045839-protein ID=TCONS_00045839-protein|Name=TCONS_00045839-protein|organism=Clytia hemisphaerica|type=polypeptide|length=569bp MFGRLIHLPRLFAGNFYKHSVRNISVNILKKSSQEDNNKMSSQESMKLITRun BLAST on NCBI transcript from alignment at scaffold_102:309994..328514+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00045839 ID=TCONS_00045839|Name=TCONS_00045839|organism=Clytia hemisphaerica|type=transcript|length=18521bp|location=Sequence derived from alignment at scaffold_102:309994..328514+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_102:309994..328514+ >TCONS_00045839 ID=TCONS_00045839|Name=TCONS_00045839|organism=Clytia hemisphaerica|type=CDS|length=32490bp|location=Sequence derived from alignment at scaffold_102:309994..328514+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00045839 vs. Swiss-Prot (Human)
Match: SYYC (Tyrosine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=YARS PE=1 SV=4) HSP 1 Score: 587.8 bits (1514), Expect = 0.000e+0 Identity = 334/525 (63.62%), Postives = 415/525 (79.05%), Query Frame = 2
Query: 161 SSQESMKLITKNLQEVIGMDRMKAIVDERPLSLYWGTATTGKPHIAYFVPMTKIADFLKAGCEVTILFADLHAYLDNMKAPWELLEKRVVYYQEIIKAMLEALDVPLEKLKFVKGTDYQLSREYTLDVFKLTTVATEHDCKKAGSEVVKQVXXXXXXXXXXXXXXXXDEEYLKVDAQFGGVDQRKIFTFAEKYLPALGYKKRIHLMNPMVPGLTGAKMSSSEADSKIDLLDEPKALKKKISKAFCEEGNIKENGILSFCKFVLYPIMELKGQEGLSIKRSEENGGDIVFQKYEDLEQIFADKKLHPGDFKNGVSDYLNQLLQPIRTKFQSAELKKLTNEAYXXXXXXXXXXGGA---TPQREVTPARLDLRIGKIVSVSNHPDAESLYVEQIDVGEEKPRTVVSGLRQYVTXXXXXXXXXXXXXXXKPANMRGVKSEGMLLAASKTNMDGQRVVVPLDPPSDSKPGDRVYVEGFSHEQHGEPDEQLNPKKKVFETLKPNLLVSDEQRAEFNGQPMKTSLGEITAK 1726
S +E + LIT+NLQEV+G +++K I+ ER L +YWGTATTGKPH+AYFVPM+KIADFLKAGCEVTILFADLHAYLDNMKAPWELLE RV YY+ +IKAMLE++ VPLEKLKF+KGTDYQLS+EYTLDV++L++V T+HD KKAG+EVVKQV++PLLSGLLYPGLQALDEEYLKVDAQFGG+DQRKIFTFAEKYLPALGY KR+HLMNPMVPGLTG+KMSSSE +SKIDLLD + +KKK+ KAFCE GN++ NG+LSF K VL+P+ + I R E+ GG+ + Y DLE+ FA + +HPGD KN V LN+LL PIR KF + LKKL + AYP P K+K G + EV P+RLD+R+GKI++V HPDA+SLYVE+IDVGE +PRTVVSGL Q+V ++L +RLVV+LCNLKP MRGV+S+GMLL AS ++ R V PLDPP+ S PG+ V+V+G+ + G+PDE+L PKKKVFE L+ + +S+E A++ T LG I+ K
Sbjct: 6 SPEEKLHLITRNLQEVLGEEKLKEILKERELKIYWGTATTGKPHVAYFVPMSKIADFLKAGCEVTILFADLHAYLDNMKAPWELLELRVSYYENVIKAMLESIGVPLEKLKFIKGTDYQLSKEYTLDVYRLSSVVTQHDSKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKVDAQFGGIDQRKIFTFAEKYLPALGYSKRVHLMNPMVPGLTGSKMSSSEEESKIDLLDRKEDVKKKLKKAFCEPGNVENNGVLSFIKHVLFPL-----KSEFVILRDEKWGGNKTYTAYVDLEKDFAAEVVHPGDLKNSVEVALNKLLDPIREKFNTPALKKLASAAYPDPSKQKPMAKGPAKNSEPEEVIPSRLDIRVGKIITVEKHPDADSLYVEKIDVGEAEPRTVVSGLVQFVPKEELQDRLVVVLCNLKPQKMRGVESQGMLLCASIEGIN--RQVEPLDPPAGSAPGEHVFVKGY---EKGQPDEELKPKKKVFEKLQADFKISEECIAQWKQTNFMTKLGSISCK 520 The following BLAST results are available for this feature:
BLAST of TCONS_00045839 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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