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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045823 ID=TCONS_00045823|Name=TCONS_00045823|organism=Clytia hemisphaerica|type=transcript|length=164bp
TTTTAAAGCCGCCAAACTGCAAACTCCTTTGGCCTGCTTTATGTTACTTG
GTTAATTACAATACATCAAACTCATGGTGATCGACAATCAAATGAGTTCA
AAGCCatcgaaaaagaaattctagaTACCACCAGGCAGTGTTATTGTGGA
TTTACAGATTTTTG Run BLAST on NCBI transcript from alignment at scaffold_102:47274..51339+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045823 ID=TCONS_00045823|Name=TCONS_00045823|organism=Clytia hemisphaerica|type=transcript|length=4066bp|location=Sequence derived from alignment at scaffold_102:47274..51339+ (Clytia hemisphaerica)
TTTTAAAGCCGCCAAACTGCAAACTCCTTTGGCCTGCTTTATGTTACTTG
GTTAATTACAATACATCAAACTCATGGTGATCGACAATCAAATGAGTTCA
AAGCCatcgaaaaagaaattctagaTACCGTAAGTATACCCCCTTCTTAC
AGAccaactggaaaaattggtcaaaatatcgtccccagtgaaaAATTATC
CTCCAGTTTTTGTCCcgactgaaaataatcagataagcaaaatcgtaact
gcaaaatattatgctattcttcccatccccactgaattttctgacttgaa
aacaaaataattgaaatccccagccataaaaaatatgggaatatcaattc
ccatcgagttttagtccgttatttctacccccactggctgaaaaaatcct
accgggtctgtgagaaggggctgTGTAAGTCCAGTAGAGATTTATGTTTT
TTGAGTGAGTAACAAATTGGCAGTATCGCTCTTTTTTTCACCACTTGTTT
TGAGCTTGCTTTcgttaaaattattttagtcaACAAATTGTTGCGACAAT
CCTAACCACTTGTAACTGACTTGAACCCAAGCAAGTGTAACCGAAGGCTA
GAAGTGAATCTAGGCTGGCATTTGCAGCCACTCATTTTCTACTTTAACTT
TGCGGCCCGCGTAGTTTTCACTAGACAATGTTATCGTTCGTTACAGTGAT
AGCAAAGGTGGGGAAATATGGTGGtttggcgttatggcggtattcGGAAA
AAAAAGGCGGAAGAGTTTCGAAgagactggcaaactctaccggctgtaaa
ctcttttcggcaaaaaaaaaattttcttcggcttttgGATTATTTCTTAG
ATAGCGATTTGCCTTAGACTAAAGCATAGTCTAGGTTTTCACATGAATAT
TAGATTTGAAGTGACATTTAATTGCTTAATTGCCTGAACCCACCAATTCA
GATCTTTTTCAATATCATTATGTTTCAGATGGGTTCAGCGTTGGACATTA
ATAATACGGCTACCAAAATCCAAATCATTAACATCAGGTAATTAGAAATT
AGAAATCGGTTCGTAGAGGTCTACCTCGGGCCTGTGAACTTCTACATCAT
CATAAtaataccgtaacttggtctaacgtcgacacccctcctctaattcc
gaccccctctttatcagctgaaatttatagaaaggtcaaaacgaataatc
cttttttcaatcagtgattcaaactttcatattattcctttctctaaaga
agggtgtcggaattagacgagggatgtcgatattagaccaacttactgta
ctaactagtcatagctttcactaaatgcccacgcagaagatcatgtcatc
cacttataaagcttttactgcttttaatgctttaaaaattaaagcattaa
aaataatcaggaataattgattgatttaattattgaatgattgattaatt
gattgaggcatatgcttgaaaaaaaattatattccataaACACAATaatt
gaagaattcatgcagcttgataatttgataaaatttgaggaaaagcttct
caaaaatatatttcaaaaattatggtatcattagcttactggttttcaca
tctcctgtttgtttttttttctctcagtttctttcttacaacaatatatg
tcatgactattattcacaatagaccttttctgataatgccgcagacatct
tagattgtaggcaaaatatatggcgatgaataaataaacaaggaaaccaa
tcagaaatagcttgcttttttcattggttgctatatttcaacaattctct
agtgctactttgcctaataaacaatagtcaagagaatactacgtataaaa
tttatcaaaaagttctgcgccatcttaaattgggtgaaatagaaaccaat
cctagttgaGGCCCGGGCTCCTCttgtgtacgctgtgattgcgCTTCTCA
AGTAAAATcttatgttgttggtcaaaagaaaaataaaggaatgccattgt
gctCTATTCAGACTTACAGTcgagaaaatttgaaatgcgctttaattttt
tttcaagtgcatagtactttttcatgatgcaatcttttctccaagctgaa
aggatcgaagccaataagatgatcgcagcgcagacaatgaagagacgtgc
ctccaggaagctagactttttgagtttatagctatatacttttactttat
TGTGTTTCCGTATGAATGTCTGTGtatctagtctaaccaccgttaaatgc
cttcgggaaggtccctcctaacttggaatgccagaattggagctatttca
ccaaaccactggagcgtaagttatttagaaaaagttgaatatgggcatgt
aaagttaaacgaatgttagcaaacttttttcaggtttttgaaatagattt
tagcgcactgaaaaaacagtgaatacactctaagtgaggtaaatctattt
tgaagaccaaaagaaaaagtttgtttacattgattgacattcaacattca
ttcaaccacttttggattcaactttacatatggcAATACatacattcaac
atttttgtactttgccggtatcttgttttactaagttaagaaggactttc
tcgagttacgaccatatgatggtatttaaagctcaagaagctctNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCAAATGTACgtaca
ttaaaaaacttgagcaaatttctttaaagattccagaaaaagaattgaaa
tcattgctgaaatgaacttctgattaaattacagtatttagtattcagtt
tcatagaccagaaacaaaatttgacatacaaaacactttttccagtcaat
gaatcagctcatcatcataaccagtctaccattttgtttgttttgatttg
cacaagtaatattgtaattcgtgtgtatatcatacactgttataatttgc
atttataacactcgcttcagcttttcaaaggtaaattaaaactaataaat
tgtaatatgtaacaatggtaatagcatacaacgtaatatgaaaatatgca
tactactgtcccgaaaaaaaaccgaacatttacggaagagactaactacg
gggatgcttgcgcgacaaaacacaAACAACAANNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcaacaaa
aacaacaaaatttcgagattccagtccaatatctatgcgtgaaactatga
gtgcctcctcgtcgctgcgctcctgcgggggcaataataataataagtcA
TTCTTCTTCGGATGCCATTTCTAGCTGTAAGATGAGAGTGAGTATACCAC
CAAAAGGTTTCTCTTTCAAGcaaattttctcgagttctcgAATTTTAGAC
TAATATAAATCTTTCTccattgaaaaaagaaagaaagtttaaATTTTAAC
GGACTTTTTATTGCAATGGTTATTGGATCAACATTTGTACTCAACTGAAT
AAACATTCTTGATATTGGTTCAAAATCTAAAAgtctgaaaaatatttcat
ttactTTATGActtttatataccctggacatcCCGATCAAGCATaccttt
tttgaaagtggtacctaatggtagcactactcgatGTTGCtggattgaat
aacaaattGACCCACGTCAAATGGTCCTACCGTTAGGTCACCACTTCtct
aaaaactccgatcaaagatggcggatatagcttggtccagggtttatATA
AGTCAGTGTTTGGTGATTTTAACAAATAATATCATAGATCTTTCTCTAAC
ATAACACCATTCTGCTTCGTTTCCTTTACAGACCAGGCAGTGTTATTGTG
GATTTACAGATTTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045823-exon-scaffold_102-1491911889:47274..47402 | TCONS_00045823-exon-scaffold_102-1491911889:47274..47402 | Clytia hemisphaerica | exon |
| TCONS_00045823-exon-scaffold_102-1510915933:47274..47402 | TCONS_00045823-exon-scaffold_102-1510915933:47274..47402 | Clytia hemisphaerica | exon |
| TCONS_00045823-exon-scaffold_102-1575043694:47274..47402 | TCONS_00045823-exon-scaffold_102-1575043694:47274..47402 | Clytia hemisphaerica | exon |
| TCONS_00045823-exon-scaffold_102-1491911889:51305..51339 | TCONS_00045823-exon-scaffold_102-1491911889:51305..51339 | Clytia hemisphaerica | exon |
| TCONS_00045823-exon-scaffold_102-1510915933:51305..51339 | TCONS_00045823-exon-scaffold_102-1510915933:51305..51339 | Clytia hemisphaerica | exon |
| TCONS_00045823-exon-scaffold_102-1575043694:51305..51339 | TCONS_00045823-exon-scaffold_102-1575043694:51305..51339 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_102 | supercontig | scaffold_102:47274..51339 + |
Blast
The following BLAST results are available for this feature:
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