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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045815 ID=TCONS_00045815|Name=TCONS_00045815|organism=Clytia hemisphaerica|type=transcript|length=1414bp
GTCAGGTTTAGTAAGCTTAGGTTCTGCGATCGGGTTTTCAACTGGAATCA
TAACTGTTTCATTACTAACAATATCGATGTCTAATAGCTCTGGAATGGGT
ACTTGTGGTTGTTCATCTTCATCTGGTACGATAAGTATCTCCTTTGGTAA
TGATCCCGACTCGTAGAACACTTCCTCCGTGACGCACAACAACAACTTTT
CCTTCAATTCCGATAATGGTACCTGGACCATGCCAGTCCTTGTCTGAATT
TCGTTTGTAATAGACTGTATCTCCATTATTAAACTCTTTGCTCGTTGTTG
TTCGTGTTTGAAGTGATAGCGCTGTTTTGATTCTTTTACTGGATTCAGCT
TGGATAAATGCCCTTCTAGCAGAGTGAAGAGCATTCAAATGTTCAGCAAC
AAATTCACTTGACGTTTTCGTTCGAAGGGCTGGTAACTGAGATGTTAACG
TGGACGGAAGATTTGGGTTACGGCTGAAGACTAGTTGATTAGGACTGTAT
CCCAAGTTGTTGGACAAAGCATTTTTCGCACTTACAGCCCAAACAAGTGC
ATTCTGTATGGAGCACTGAGTATCAGCAACAATTTTGTGGATCATGTTTC
CTAGAGTGGCATTATGTCTCTCGACTACCCCATTTGACCATGGTGATTCA
GCAGCTTTTGAAGCTATCGATACATCTAAAAGTTCTGCTACGTCACGAAG
CAGTTCATTGTTAAACTCTCCTCCATTGTCAACAAAGATTGATTGTGGTG
AACCGAAAATAGCAACCCAGTGTTTCAAGATTTCGTCAACTATCACCTCC
TTGTGTTTAGATTTGATGACGGATGTCCAAACTGTTTATGCAGCTTAACA
GCAATAGACTTTTTCTCCTCTTTCGACTTTGTGTTTAAATCATTTATTGT
AAGATATAACTCAATTGGTGCTTCAGGNTTACTTTTTGTTTCTGTTACGT
CTTCGCGATTTGGTATCGAATTGAGATAGCAATTTAACCAATTCTTTCCG
CATACATTTGAAGGGCAACCTGGATCAATAACTGCACAACTTAATGTTTC
TGATACCATCTGCTCAAGAAAACATAACTCGACTCCACTTTCTTGCGTAA
ATAACTTTCAAATGTTGTAATGATAAGTCCTTTTTATCTGCATCCGGACA
GTCACGGTAGTAATGATAGATTGAACCACAAATTTTTACAACGAGTAGGG
TTACCATTTTCATCTGGACAGTTTTTATAATGAGTTGATGACTGTGCTTG
AGGAGCGCGACTGTCCTCTTGACGGGATCCTCGATAGTTAGCTCCTCCAC
GTCCACGATATCGATTAACTCGAAAATTTCGTCCTCGATTAGCAGAATAA
TTGTTACAAGAATAATATGCTTGTTCATTTTCAACTAAAATATCTGATGT
ATCTTCAGTCGTTT Run BLAST on NCBI protein sequence of TCONS_00045815-protein >TCONS_00045815-protein ID=TCONS_00045815-protein|Name=TCONS_00045815-protein|organism=Clytia hemisphaerica|type=polypeptide|length=158bp
MIHKIVADTQCSIQNALVWAVSAKNALSNNLGYSPNQLVFSRNPNLPSTL
TSQLPALRTKTSSEFVAEHLNALHSARRAFIQAESSKRIKTALSLQTRTT
TSKEFNNGDTVYYKRNSDKDWHGPGTIIGIEGKVVVVRHGGSVLRVGIIT
KGDTYRTR Run BLAST on NCBI transcript from alignment at scaffold_101:52313..53726 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045815 ID=TCONS_00045815|Name=TCONS_00045815|organism=Clytia hemisphaerica|type=transcript|length=1414bp|location=Sequence derived from alignment at scaffold_101:52313..53726 (Clytia hemisphaerica)
AAACGACTGAAGATACATCAGATATTTTAGTTGAAAATGAACAAGCATAT
TATTCTTGTAACAATTATTCTGCTAATCGAGGACGAAATTTTCGAGTTAA
TCGATATCGTGGACGTGGAGGAGCTAACTATCGAGGATCCCGTCAAGAGG
ACAGTCGCGCTCCTCAAGCACAGTCATCAACTCATTATAAAAACTGTCCA
GATGAAAATGGTAACCCTACTCGTTGTAAAAATTTGTGGTTCAATCTATC
ATTACTACCGTGACTGTCCGGATGCAGATAAAAAGGACTTATCATTACAA
CATTTGAAAGTTATTTACGCAAGAAAGTGGAGTCGAGTTATGTTTTCTTG
AGCAGATGGTATCAGAAACATTAAGTTGTGCAGTTATTGATCCAGGTTGC
CCTTCAAATGTATGCGGAAAGAATTGGTTAAATTGCTATCTCAATTCGAT
ACCAAATCGCGAAGACGTAACAGAAACAAAAAGTAANCCTGAAGCACCAA
TTGAGTTATATCTTACAATAAATGATTTAAACACAAAGTCGAAAGAGGAG
AAAAAGTCTATTGCTGTTAAGCTGCATAAACAGTTTGGACATCCGTCATC
AAATCTAAACACAAGGAGGTGATAGTTGACGAAATCTTGAAACACTGGGT
TGCTATTTTCGGTTCACCACAATCAATCTTTGTTGACAATGGAGGAGAGT
TTAACAATGAACTGCTTCGTGACGTAGCAGAACTTTTAGATGTATCGATA
GCTTCAAAAGCTGCTGAATCACCATGGTCAAATGGGGTAGTCGAGAGACA
TAATGCCACTCTAGGAAACATGATCCACAAAATTGTTGCTGATACTCAGT
GCTCCATACAGAATGCACTTGTTTGGGCTGTAAGTGCGAAAAATGCTTTG
TCCAACAACTTGGGATACAGTCCTAATCAACTAGTCTTCAGCCGTAACCC
AAATCTTCCGTCCACGTTAACATCTCAGTTACCAGCCCTTCGAACGAAAA
CGTCAAGTGAATTTGTTGCTGAACATTTGAATGCTCTTCACTCTGCTAGA
AGGGCATTTATCCAAGCTGAATCCAGTAAAAGAATCAAAACAGCGCTATC
ACTTCAAACACGAACAACAACGAGCAAAGAGTTTAATAATGGAGATACAG
TCTATTACAAACGAAATTCAGACAAGGACTGGCATGGTCCAGGTACCATT
ATCGGAATTGAAGGAAAAGTTGTTGTTGTGCGTCACGGAGGAAGTGTTCT
ACGAGTCGGGATCATTACCAAAGGAGATACTTATCGTACCAGATGAAGAT
GAACAACCACAAGTACCCATTCCAGAGCTATTAGACATCGATATTGTTAG
TAATGAAACAGTTATGATTCCAGTTGAAAACCCGATCGCAGAACCTAAGC
TTACTAAACCTGAC Coding sequence (CDS) from alignment at scaffold_101:52313..53726 >TCONS_00045815 ID=TCONS_00045815|Name=TCONS_00045815|organism=Clytia hemisphaerica|type=CDS|length=477bp|location=Sequence derived from alignment at scaffold_101:52313..53726 (Clytia hemisphaerica)
ATGATCCACAAAATTGTTGCTGATACTCAGTGCTCCATACAGAATGCACT
TGTTTGGGCTGTAAGTGCGAAAAATGCTTTGTCCAACAACTTGGGATACA
GTCCTAATCAACTAGTCTTCAGCCGTAACCCAAATCTTCCGTCCACGTTA
ACATCTCAGTTACCAGCCCTTCGAACGAAAACGTCAAGTGAATTTGTTGC
TGAACATTTGAATGCTCTTCACTCTGCTAGAAGGGCATTTATCCAAGCTG
AATCCAGTAAAAGAATCAAAACAGCGCTATCACTTCAAACACGAACAACA
ACGAGCAAAGAGTTTAATAATGGAGATACAGTCTATTACAAACGAAATTC
AGACAAGGACTGGCATGGTCCAGGTACCATTATCGGAATTGAAGGAAAAG
TTGTTGTTGTGCGTCACGGAGGAAGTGTTCTACGAGTCGGGATCATTACC
AAAGGAGATACTTATCGTACCAGATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045815-exon-scaffold_101-1491911889:52313..53726 | TCONS_00045815-exon-scaffold_101-1491911889:52313..53726 | Clytia hemisphaerica | exon |
| TCONS_00045815-exon-scaffold_101-1510915933:52313..53726 | TCONS_00045815-exon-scaffold_101-1510915933:52313..53726 | Clytia hemisphaerica | exon |
| TCONS_00045815-exon-scaffold_101-1575043694:52313..53726 | TCONS_00045815-exon-scaffold_101-1575043694:52313..53726 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_101 | supercontig | scaffold_101:52313..53726 . |
Blast
The following BLAST results are available for this feature:
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