TCONS_00045813 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045813
Unique NameTCONS_00045813
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length452

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045813 ID=TCONS_00045813|Name=TCONS_00045813|organism=Clytia hemisphaerica|type=transcript|length=452bp
TTCCTCCATCAAACTGttataaaaatgtttaaagaaattttagctctaat
gatttttatttttacaaatcCATTGGAGAAGTCTCATTTAAAAAGAGTGT
TCACTAAAGGTTGAACAGAATTCACAGAGCTTCGAAGTTAAGGAAAATTG
GTTGTTGCCGATTTTGAGGAAACTTATCAAAGATGTTTTCAACGAAAAAA
GCAATGTTAACAGAAGATGAAATCAAATCAGGAATACCGCAAATTCTTGA
TCTTAATATGGCATTTTTCACGCAACAATGTCTTTACACCATGGTCAAAC
TGAGGATTCCTGATGTCATTGGAGCTGAAACTTTATCCGTGAAAGAGATT
TGCCAACGCCTTGGAGATAACGTTGACCAAGATTTGCTGTTTCGTCAAAT
GAGACTTTTAGCTGAAGTTGGAATTTTCGTTGAAACAGCAAGCGAAGATG
NN
Run BLAST on NCBI

transcript from alignment at scaffold_101:14042..14493

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045813 ID=TCONS_00045813|Name=TCONS_00045813|organism=Clytia hemisphaerica|type=transcript|length=452bp|location=Sequence derived from alignment at scaffold_101:14042..14493 (Clytia hemisphaerica)
NNCATCTTCGCTTGCTGTTTCAACGAAAATTCCAACTTCAGCTAAAAGTC
TCATTTGACGAAACAGCAAATCTTGGTCAACGTTATCTCCAAGGCGTTGG
CAAATCTCTTTCACGGATAAAGTTTCAGCTCCAATGACATCAGGAATCCT
CAGTTTGACCATGGTGTAAAGACATTGTTGCGTGAAAAATGCCATATTAA
GATCAAGAATTTGCGGTATTCCTGATTTGATTTCATCTTCTGTTAACATT
GCTTTTTTCGTTGAAAACATCTTTGATAAGTTTCCTCAAAATCGGCAACA
ACCAATTTTCCTTAACTTCGAAGCTCTGTGAATTCTGTTCAACCTTTAGT
GAACACTCTTTTTAAATGAGACTTCTCCAATGgatttgtaaaaataaaaa
tcattagagctaaaatttctttaaacatttttataaCAGTTTGATGGAGG
AA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029285XLOC_029285Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045813-exon-scaffold_101-1491911889:14042..14493TCONS_00045813-exon-scaffold_101-1491911889:14042..14493Clytia hemisphaericaexon
TCONS_00045813-exon-scaffold_101-1510915933:14042..14493TCONS_00045813-exon-scaffold_101-1510915933:14042..14493Clytia hemisphaericaexon
TCONS_00045813-exon-scaffold_101-1575043694:14042..14493TCONS_00045813-exon-scaffold_101-1575043694:14042..14493Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_101supercontigscaffold_101:14042..14493 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
113.749	112.774	118.465	108.186	32.9198	24.1875	1.95793	4.6894	0.448063	1.4268	0.591666	0.0972345	0	0	0.165806	0	56.4328	72.4355	0	0	113.301	102.039	64.5977	71.6967	37.7832	46.112	48.3366	37.1602	9.78435	11.2612
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045813 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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