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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045789 ID=TCONS_00045789|Name=TCONS_00045789|organism=Clytia hemisphaerica|type=transcript|length=1342bp
CTTcagttttgtcattttttcctaattttttcaaattttataactaaatt
ttgctttcaatttttagttgaaACATTCGTTATCAACACGAAACTCCTAT
TGGCTCCATTATAAGTCCCGCCACATTTCAACAGCAGAAACATTTATCCT
GCTGATCGTTTCATGCGTCGTCGAGAAAAAGACCGTGTCGACTACAGGCC
GTTGAATATTGTGACTGGCAGTCGTATTCCAAGACGAATTCAGAGACCAA
CTATGGCAAACGACGGCGACGAAATAACGCCTCGTGAGCGATTAATTGAC
GATTTATCACTCGAAGTCGACATTATGAAAGATGAAATATCTGACTACAT
CCAAGAGATTTCTTACTACGTCACACCCGTTAGTGATGTGTTGTCTCAGC
TTGAGAAACATCGAACGACGTTTCGTTCCAAACACTACAAATTACGACAT
TATCTCGGTGCAACATACGACGAGAAGTATGCTACGGATTACGAGACTTT
GATCAACGAAATTGCAGCTGCAATCAGATTAGCCAAGGATGAGATAAAGA
TCATCAAAGTTGAAGCAACGCAACTAGAAGCAACCCNACTTCAAAGATTC
TTGGTACTTCTGGGTTGCATGTTTGAAGCTCTTCAGGTAATTCTCCTGAT
TCTCCTTCCACCTTAGCAGTTGTTCATCAGTTGCAAGTTGCACATTCTTC
TCCCAAGACATTTGCAACTCTTTCAAACAATGATCGGTTGATTCCACTTG
AAATAGCATGGCCTCCTCCTCGAGGTCATTGGTCGTCTTTTGCTGAATCG
CTTGTAGTTTGGATGACTCGTCTTTGGCGATCTTCATCTCGTCCTTGGCA
GCTTTGATAGCATCTGTGATTTTGTCCACGAGTGTCTGGTAATCCATAGC
GTGATTATCGTTGTAAGTCGCACCAAGATAGTGTCGAAGTTTGTAATGTT
TTGCACGAAATGTCGTTCGATGCTTTTCCAATTGAGACAGCACGTCACTA
GCAGGTTGCAATTCGTACTGTATTTCATCTATGAAGTCGGAAATGTCGTC
TTTCAAGATGGCTACTTCAATTGACAATTCCTCAATAATAAGCTCACGAG
GCGTGGCATCACCATCGTCTGCCATTGTTGTCGATTTCGGGATTCGTCTT
GGAATACGACTGCCTGTCAGAATATTCAACGGCCTGTAGTCGACACGGTC
TTGTTCTCGACGACGCATGAAACGATCAGCAGGATAAGTGTTTCTGCTGT
TGAAATGTGGCGGGACTTATAATTGGAGCCGTAAATTGAGTTTGGTGTTG
ATAACGAATGTttcaactaaaaattgaaagcaaaatttagtt Run BLAST on NCBI protein sequence of TCONS_00045789-protein >TCONS_00045789-protein ID=TCONS_00045789-protein|Name=TCONS_00045789-protein|organism=Clytia hemisphaerica|type=polypeptide|length=214bp
MRRREQDRVDYRPLNILTGSRIPRRIPKSTTMADDGDATPRELIIEELSI
EVAILKDDISDFIDEIQYELQPASDVLSQLEKHRTTFRAKHYKLRHYLGA
TYNDNHAMDYQTLVDKITDAIKAAKDEMKIAKDESSKLQAIQQKTTNDLE
EEAMLFQVESTDHCLKELQMSWEKNVQLATDEQLLRWKENQENYLKSFKH
ATQKYQESLKXGCF Run BLAST on NCBI transcript from alignment at scaffold_100:656727..658068 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045789 ID=TCONS_00045789|Name=TCONS_00045789|organism=Clytia hemisphaerica|type=transcript|length=1342bp|location=Sequence derived from alignment at scaffold_100:656727..658068 (Clytia hemisphaerica)
aactaaattttgctttcaatttttagttgaaACATTCGTTATCAACACCA
AACTCAATTTACGGCTCCAATTATAAGTCCCGCCACATTTCAACAGCAGA
AACACTTATCCTGCTGATCGTTTCATGCGTCGTCGAGAACAAGACCGTGT
CGACTACAGGCCGTTGAATATTCTGACAGGCAGTCGTATTCCAAGACGAA
TCCCGAAATCGACAACAATGGCAGACGATGGTGATGCCACGCCTCGTGAG
CTTATTATTGAGGAATTGTCAATTGAAGTAGCCATCTTGAAAGACGACAT
TTCCGACTTCATAGATGAAATACAGTACGAATTGCAACCTGCTAGTGACG
TGCTGTCTCAATTGGAAAAGCATCGAACGACATTTCGTGCAAAACATTAC
AAACTTCGACACTATCTTGGTGCGACTTACAACGATAATCACGCTATGGA
TTACCAGACACTCGTGGACAAAATCACAGATGCTATCAAAGCTGCCAAGG
ACGAGATGAAGATCGCCAAAGACGAGTCATCCAAACTACAAGCGATTCAG
CAAAAGACGACCAATGACCTCGAGGAGGAGGCCATGCTATTTCAAGTGGA
ATCAACCGATCATTGTTTGAAAGAGTTGCAAATGTCTTGGGAGAAGAATG
TGCAACTTGCAACTGATGAACAACTGCTAAGGTGGAAGGAGAATCAGGAG
AATTACCTGAAGAGCTTCAAACATGCAACCCAGAAGTACCAAGAATCTTT
GAAGTNGGGTTGCTTCTAGTTGCGTTGCTTCAACTTTGATGATCTTTATC
TCATCCTTGGCTAATCTGATTGCAGCTGCAATTTCGTTGATCAAAGTCTC
GTAATCCGTAGCATACTTCTCGTCGTATGTTGCACCGAGATAATGTCGTA
ATTTGTAGTGTTTGGAACGAAACGTCGTTCGATGTTTCTCAAGCTGAGAC
AACACATCACTAACGGGTGTGACGTAGTAAGAAATCTCTTGGATGTAGTC
AGATATTTCATCTTTCATAATGTCGACTTCGAGTGATAAATCGTCAATTA
ATCGCTCACGAGGCGTTATTTCGTCGCCGTCGTTTGCCATAGTTGGTCTC
TGAATTCGTCTTGGAATACGACTGCCAGTCACAATATTCAACGGCCTGTA
GTCGACACGGTCTTTTTCTCGACGACGCATGAAACGATCAGCAGGATAAA
TGTTTCTGCTGTTGAAATGTGGCGGGACTTATAATGGAGCCAATAGGAGT
TTCGTGTTGATAACGAATGTttcaactaaaaattgaaagcaaaatttagt
tataaaatttgaaaaaattaggaaaaaatgacaaaactgAAG Coding sequence (CDS) from alignment at scaffold_100:656727..658068 >TCONS_00045789 ID=TCONS_00045789|Name=TCONS_00045789|organism=Clytia hemisphaerica|type=CDS|length=645bp|location=Sequence derived from alignment at scaffold_100:656727..658068 (Clytia hemisphaerica)
ATGCGTCGTCGAGAACAAGACCGTGTCGACTACAGGCCGTTGAATATTCT
GACAGGCAGTCGTATTCCAAGACGAATCCCGAAATCGACAACAATGGCAG
ACGATGGTGATGCCACGCCTCGTGAGCTTATTATTGAGGAATTGTCAATT
GAAGTAGCCATCTTGAAAGACGACATTTCCGACTTCATAGATGAAATACA
GTACGAATTGCAACCTGCTAGTGACGTGCTGTCTCAATTGGAAAAGCATC
GAACGACATTTCGTGCAAAACATTACAAACTTCGACACTATCTTGGTGCG
ACTTACAACGATAATCACGCTATGGATTACCAGACACTCGTGGACAAAAT
CACAGATGCTATCAAAGCTGCCAAGGACGAGATGAAGATCGCCAAAGACG
AGTCATCCAAACTACAAGCGATTCAGCAAAAGACGACCAATGACCTCGAG
GAGGAGGCCATGCTATTTCAAGTGGAATCAACCGATCATTGTTTGAAAGA
GTTGCAAATGTCTTGGGAGAAGAATGTGCAACTTGCAACTGATGAACAAC
TGCTAAGGTGGAAGGAGAATCAGGAGAATTACCTGAAGAGCTTCAAACAT
GCAACCCAGAAGTACCAAGAATCTTTGAAGTNGGGTTGCTTCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045789-exon-scaffold_100-1491911889:656727..658068 | TCONS_00045789-exon-scaffold_100-1491911889:656727..658068 | Clytia hemisphaerica | exon |
| TCONS_00045789-exon-scaffold_100-1510915933:656727..658068 | TCONS_00045789-exon-scaffold_100-1510915933:656727..658068 | Clytia hemisphaerica | exon |
| TCONS_00045789-exon-scaffold_100-1575043694:656727..658068 | TCONS_00045789-exon-scaffold_100-1575043694:656727..658068 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_100 | supercontig | scaffold_100:656727..658068 . |
Blast
The following BLAST results are available for this feature:
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