TCONS_00045786 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045786
Unique NameTCONS_00045786
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length440

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045786 ID=TCONS_00045786|Name=TCONS_00045786|organism=Clytia hemisphaerica|type=transcript|length=440bp
ATGGTTTGATTGTGTTAAGTTATCAGTGTATTATACGACAGATTTACAAT
ATCGAGACACGGTCACGGAGTCAGACGCTGACGTACCCGGAAAGAGCACG
TAGTGATACAACCACGACCGTTAGTAGCCTTCGCGTCACGGAGGAAGTCA
AGAAAAACAAGACCATTACAAATTTATCCCTTATATTATCAATAGTATAC
TTAATGTTATGGCTACCATCTGTTCTTTATTATACCATATTACACTTTTG
TCCGAAAGGTTGTTTCGCGTCCGATTATTTTGACTCGACTGCAGAAATGT
ACATTGGATTTCTAGTAAAATACGTTGCATTTCTAGATGCACTAGCCGCA
CCGttgatttattgtttttatcatCAAGAGTTCCGGAATGAGGCTAATAA
ACGCTTTAAATGGTGTTATTTGACAGAACTTTGTTGTCGC
Run BLAST on NCBI

protein sequence of TCONS_00045786-protein

>TCONS_00045786-protein ID=TCONS_00045786-protein|Name=TCONS_00045786-protein|organism=Clytia hemisphaerica|type=polypeptide|length=146bp
GLIVLSYQCIIRQIYNIETRSRSQTLTYPERARSDTTTTVSSLRVTEEVK
KNKTITNLSLILSIVYLMLWLPSVLYYTILHFCPKGCFASDYFDSTAEMY
IGFLVKYVAFLDALAAPLIYCFYHQEFRNEANKRFKWCYLTELCCR
Run BLAST on NCBI

transcript from alignment at scaffold_100:547717..548156

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045786 ID=TCONS_00045786|Name=TCONS_00045786|organism=Clytia hemisphaerica|type=transcript|length=440bp|location=Sequence derived from alignment at scaffold_100:547717..548156 (Clytia hemisphaerica)
GCGACAACAAAGTTCTGTCAAATAACACCATTTAAAGCGTTTATTAGCCT
CATTCCGGAACTCTTGatgataaaaacaataaatcaaCGGTGCGGCTAGT
GCATCTAGAAATGCAACGTATTTTACTAGAAATCCAATGTACATTTCTGC
AGTCGAGTCAAAATAATCGGACGCGAAACAACCTTTCGGACAAAAGTGTA
ATATGGTATAATAAAGAACAGATGGTAGCCATAACATTAAGTATACTATT
GATAATATAAGGGATAAATTTGTAATGGTCTTGTTTTTCTTGACTTCCTC
CGTGACGCGAAGGCTACTAACGGTCGTGGTTGTATCACTACGTGCTCTTT
CCGGGTACGTCAGCGTCTGACTCCGTGACCGTGTCTCGATATTGTAAATC
TGTCGTATAATACACTGATAACTTAACACAATCAAACCAT

Coding sequence (CDS) from alignment at scaffold_100:547717..548156

>TCONS_00045786 ID=TCONS_00045786|Name=TCONS_00045786|organism=Clytia hemisphaerica|type=CDS|length=438bp|location=Sequence derived from alignment at scaffold_100:547717..548156 (Clytia hemisphaerica)
GCGACAACAAAGTTCTGTCAAATAACACCATTTAAAGCGTTTATTAGCCT
CATTCCGGAACTCTTGatgataaaaacaataaatcaaCGGTGCGGCTAGT
GCATCTAGAAATGCAACGTATTTTACTAGAAATCCAATGTACATTTCTGC
AGTCGAGTCAAAATAATCGGACGCGAAACAACCTTTCGGACAAAAGTGTA
ATATGGTATAATAAAGAACAGATGGTAGCCATAACATTAAGTATACTATT
GATAATATAAGGGATAAATTTGTAATGGTCTTGTTTTTCTTGACTTCCTC
CGTGACGCGAAGGCTACTAACGGTCGTGGTTGTATCACTACGTGCTCTTT
CCGGGTACGTCAGCGTCTGACTCCGTGACCGTGTCTCGATATTGTAAATC
TGTCGTATAATACACTGATAACTTAACACAATCAAACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029263XLOC_029263Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045786-exon-scaffold_100-1491911889:547717..548156TCONS_00045786-exon-scaffold_100-1491911889:547717..548156Clytia hemisphaericaexon
TCONS_00045786-exon-scaffold_100-1510915933:547717..548156TCONS_00045786-exon-scaffold_100-1510915933:547717..548156Clytia hemisphaericaexon
TCONS_00045786-exon-scaffold_100-1575043694:547717..548156TCONS_00045786-exon-scaffold_100-1575043694:547717..548156Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045786-proteinTCONS_00045786-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_100supercontigscaffold_100:547717..548156 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.173895	0	0.621347	0	0.197456	0.184856	0	0	0	0	0.510717	1.379	0.174419	0.187179	2.42118	2.48163	0.489787	1.36674	2.2274	3.47663	0.704382	0.640386	0.164896	1.03016	0	0	0.681862	0.694709
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045786 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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