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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045779 ID=TCONS_00045779|Name=TCONS_00045779|organism=Clytia hemisphaerica|type=transcript|length=1697bp
tcgaatttcaaaacattcgaatcgcgtTGTTGAAgaccagaattgaaaac
aagatggcagACTAGTCAGCTCTTAAACTAGACACGCTTCCTATATACGG
GTACCCCGATCCAGTCAAATAGTTAGAGGTCATTGAATATAAAGCTTAAA
CTTAGTCTTCTTGGTAACTCATATTGCCATTTTGCTGGCGACTTATTTTC
CGGCTCTTTTTCTCCGCATTCTTCAAAACAAGTTGTCCGTTCTTCACTTC
CATGGTTGTTGAAACAACACTCACTTTCTTTTTCATGTCTTTATAACTAG
CCGTATTTTTACGTCCGCCTTCCGAAAACTTGCGCCCGCCAGTATCAAAA
GATATTTGTTTGACCATTCTACGACCGCCCTCACTTGTTTTAGAACCACT
TGAGTCAGTCGAGATTTGTCGTATGGGACCTGCCATTGAGTTACGGCTTG
GGATGAAATTAACTGTActgaaattcgattgttgacTTATTTTACGATGA
TGTTGTTGGCTTATTCTTTGATGCTGCAAACTTGTTTTTCGAAGTGACTG
GTTACTTCTTGTCGAATCTCTTGAATAGTTAGAGCGAGTTTTACTGTCTA
GGATGAAATACACGATTGGAGATATGACGTGATTAATGAATATTGATAGT
CCACACCATATCACTAGTTCCAGACTTTTGTCGATCTTACCATCTGTGTA
GAAATGGTGACTTATAAATATCATTGAAAATATGATCGGTATATAGCTTA
TGACTAGTAAGTTCGATATGATAATTACNTTATAAATATCATTGAAAATA
TAATCGGTATATAGCTTATGACTAGTAAGTTTGATATAATAATGATCGCT
TTCGTTAGCTTGCGTTCTGTCCTTTTGTTATGTATATTCAGGCTAAAATT
GCGTTTTGATAATTGCACCCTGTGTGATATCTTCAGTGTTGTGATGAATA
TGAATATTAGAAGCAACAAGATGTATACTGTCTGCGCTATGTAAAATGCG
GCTAATTTCttcttgttgttttgatttgtaacTAACGCATGCGCAATACT
CCATGCAAGTGTCACAGCGATTGCAATAAAAGCGTATAATCTAATCCGTC
GATGTGAGAAATCTTTTCGGTGTTTCTTTCGATGTATAATCAAGACCTGT
CTCTCCAAACCCAAAATAACAATCACGTTTAACACGAATACAACCataaa
attgtaaacaaacGAAAAGCCGGTTCTGCTGGCACAATTACCCGTCCGGT
TAATCAAAACCATTTGATACGGTAATAAAATAATAGCGGACACAAGTTGA
GTTATGAATataattaaaagtaattttcGAGTCACTGTTAATGGCNACAA
GTTGAGTTATGAATataattaaaagtaattttcGTGTCACTGTTAATGGC
TTTTTGTTCAACTTGGCTCGAAGAACGCCACTTATAACCACCATATTGAA
AACGACGATGCAGAGACATAAGACTGCAAAAATAACGGTTATTACATTCT
TCATTTCCTGATCAAATAATCCATCTTTAAAGAACTCAATACAATGGCTT
TCGTCTCCTTCCCTTTTCGCCATTATTGTCTGGTCTTGAATATATTCAGG
CATAATAATAAAGCATTTTATAATGGTGTATTGGAATTATTAAACAGAAT
TTCTTTTTTGTGGTtgtgttattatttttcttgtcCCACTCtctaaa Run BLAST on NCBI protein sequence of TCONS_00045779-protein >TCONS_00045779-protein ID=TCONS_00045779-protein|Name=TCONS_00045779-protein|organism=Clytia hemisphaerica|type=polypeptide|length=190bp
MIFISHHFYTDGKIDKSLELVIWCGLSIFINHVISPIVYFILDSKTRSNY
SRDSTRSNQSLRKTSLQHQRISQQHHRKISQQSNFSTVNFIPSRNSMAGP
IRQISTDSSGSKTSEGGRRMVKQISFDTGGRKFSEGGRKNTASYKDMKKK
VSVVSTTMEVKNGQLVLKNAEKKSRKISRQQNGNMSYQED Run BLAST on NCBI transcript from alignment at scaffold_100:362828..364524 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045779 ID=TCONS_00045779|Name=TCONS_00045779|organism=Clytia hemisphaerica|type=transcript|length=1697bp|location=Sequence derived from alignment at scaffold_100:362828..364524 (Clytia hemisphaerica)
tttagaGAGTGGgacaagaaaaataataacacaACCACAAAAAAGAAATT
CTGTTTAATAATTCCAATACACCATTATAAAATGCTTTATTATTATGCCT
GAATATATTCAAGACCAGACAATAATGGCGAAAAGGGAAGGAGACGAAAG
CCATTGTATTGAGTTCTTTAAAGATGGATTATTTGATCAGGAAATGAAGA
ATGTAATAACCGTTATTTTTGCAGTCTTATGTCTCTGCATCGTCGTTTTC
AATATGGTGGTTATAAGTGGCGTTCTTCGAGCCAAGTTGAACAAAAAGCC
ATTAACAGTGACACgaaaattacttttaattatATTCATAACTCAACTTG
TNGCCATTAACAGTGACTCgaaaattacttttaattatATTCATAACTCA
ACTTGTGTCCGCTATTATTTTATTACCGTATCAAATGGTTTTGATTAACC
GGACGGGTAATTGTGCCAGCAGAACCGGCTTTTCgtttgtttacaatttt
atGGTTGTATTCGTGTTAAACGTGATTGTTATTTTGGGTTTGGAGAGACA
GGTCTTGATTATACATCGAAAGAAACACCGAAAAGATTTCTCACATCGAC
GGATTAGATTATACGCTTTTATTGCAATCGCTGTGACACTTGCATGGAGT
ATTGCGCATGCGTTAgttacaaatcaaaacaacaagaaGAAATTAGCCGC
ATTTTACATAGCGCAGACAGTATACATCTTGTTGCTTCTAATATTCATAT
TCATCACAACACTGAAGATATCACACAGGGTGCAATTATCAAAACGCAAT
TTTAGCCTGAATATACATAACAAAAGGACAGAACGCAAGCTAACGAAAGC
GATCATTATTATATCAAACTTACTAGTCATAAGCTATATACCGATTATAT
TTTCAATGATATTTATAANGTAATTATCATATCGAACTTACTAGTCATAA
GCTATATACCGATCATATTTTCAATGATATTTATAAGTCACCATTTCTAC
ACAGATGGTAAGATCGACAAAAGTCTGGAACTAGTGATATGGTGTGGACT
ATCAATATTCATTAATCACGTCATATCTCCAATCGTGTATTTCATCCTAG
ACAGTAAAACTCGCTCTAACTATTCAAGAGATTCGACAAGAAGTAACCAG
TCACTTCGAAAAACAAGTTTGCAGCATCAAAGAATAAGCCAACAACATCA
TCGTAAAATAAgtcaacaatcgaatttcagTACAGTTAATTTCATCCCAA
GCCGTAACTCAATGGCAGGTCCCATACGACAAATCTCGACTGACTCAAGT
GGTTCTAAAACAAGTGAGGGCGGTCGTAGAATGGTCAAACAAATATCTTT
TGATACTGGCGGGCGCAAGTTTTCGGAAGGCGGACGTAAAAATACGGCTA
GTTATAAAGACATGAAAAAGAAAGTGAGTGTTGTTTCAACAACCATGGAA
GTGAAGAACGGACAACTTGTTTTGAAGAATGCGGAGAAAAAGAGCCGGAA
AATAAGTCGCCAGCAAAATGGCAATATGAGTTACCAAGAAGACTAAGTTT
AAGCTTTATATTCAATGACCTCTAACTATTTGACTGGATCGGGGTACCCG
TATATAGGAAGCGTGTCTAGTTTAAGAGCTGACTAGTctgccatcttgtt
ttcaattctggtcTTCAACAacgcgattcgaatgttttgaaattcga Coding sequence (CDS) from alignment at scaffold_100:362828..364524 >TCONS_00045779 ID=TCONS_00045779|Name=TCONS_00045779|organism=Clytia hemisphaerica|type=CDS|length=573bp|location=Sequence derived from alignment at scaffold_100:362828..364524 (Clytia hemisphaerica)
ATGATATTTATAAGTCACCATTTCTACACAGATGGTAAGATCGACAAAAG
TCTGGAACTAGTGATATGGTGTGGACTATCAATATTCATTAATCACGTCA
TATCTCCAATCGTGTATTTCATCCTAGACAGTAAAACTCGCTCTAACTAT
TCAAGAGATTCGACAAGAAGTAACCAGTCACTTCGAAAAACAAGTTTGCA
GCATCAAAGAATAAGCCAACAACATCATCGTAAAATAAgtcaacaatcga
atttcagTACAGTTAATTTCATCCCAAGCCGTAACTCAATGGCAGGTCCC
ATACGACAAATCTCGACTGACTCAAGTGGTTCTAAAACAAGTGAGGGCGG
TCGTAGAATGGTCAAACAAATATCTTTTGATACTGGCGGGCGCAAGTTTT
CGGAAGGCGGACGTAAAAATACGGCTAGTTATAAAGACATGAAAAAGAAA
GTGAGTGTTGTTTCAACAACCATGGAAGTGAAGAACGGACAACTTGTTTT
GAAGAATGCGGAGAAAAAGAGCCGGAAAATAAGTCGCCAGCAAAATGGCA
ATATGAGTTACCAAGAAGACTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045779-exon-scaffold_100-1491911889:362828..364524 | TCONS_00045779-exon-scaffold_100-1491911889:362828..364524 | Clytia hemisphaerica | exon |
| TCONS_00045779-exon-scaffold_100-1510915933:362828..364524 | TCONS_00045779-exon-scaffold_100-1510915933:362828..364524 | Clytia hemisphaerica | exon |
| TCONS_00045779-exon-scaffold_100-1575043694:362828..364524 | TCONS_00045779-exon-scaffold_100-1575043694:362828..364524 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_100 | supercontig | scaffold_100:362828..364524 . |
Blast
The following BLAST results are available for this feature:
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