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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045758 ID=TCONS_00045758|Name=TCONS_00045758|organism=Clytia hemisphaerica|type=transcript|length=1354bpRun BLAST on NCBI protein sequence of TCONS_00045758-protein >TCONS_00045758-protein ID=TCONS_00045758-protein|Name=TCONS_00045758-protein|organism=Clytia hemisphaerica|type=polypeptide|length=320bp SHVKILKVVFQQLCEKIDRVRVKAGQLLYQLLYFKKDMGALPCIEQLREIRun BLAST on NCBI transcript from alignment at scaffold_100:868957..890015- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00045758 ID=TCONS_00045758|Name=TCONS_00045758|organism=Clytia hemisphaerica|type=transcript|length=21059bp|location=Sequence derived from alignment at scaffold_100:868957..890015- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_100:868957..890015- >TCONS_00045758 ID=TCONS_00045758|Name=TCONS_00045758|organism=Clytia hemisphaerica|type=CDS|length=11556bp|location=Sequence derived from alignment at scaffold_100:868957..890015- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00045758 vs. Swiss-Prot (Human)
Match: TBCD (Tubulin-specific chaperone D OS=Homo sapiens GN=TBCD PE=1 SV=2) HSP 1 Score: 196.438 bits (498), Expect = 4.707e-54 Identity = 110/288 (38.19%), Postives = 176/288 (61.11%), Query Frame = 3
Query: 12 KILKVVFQQLCEKIDRVRVKAGQLLYQLLYF-KKDMGALPCIEQLREILSKSKEETINWAVPNEAFAIIEKLLSIKPYQYXXXXXXXXXXXXXTESLARHATDCVLNFLGENQESIEEMDRISEHFLNILKTHNKNDRVIVPLLKLLERLFSSGCFDVYLDSDTDSLSDFPQKLLTLVKEECKGCGDIKKLLVVVNIFCCLVQFEGEVRTKSLQHLFMFLCHKYPRVRRVTAEQLYTTFLTYDDIVCEDEQENVMNILTDVSWDQNIEMVRPERNKLCEIFGLPIPKL 872
+I+ V QQ EKIDR R A + LL+F + +P +L ++ +S ++NW+ P++AF I +LL + Y+Y ++LG+ +S GG+TES RH+T + ++ Q + + S L I + + N+RV VPLLK L+ + + GCFD++ T+ F KLL L K+E K DI+KLL + +FC +VQF G+VR ++L L + LCH++P +R+ TA Q+Y T LTY D+V D + V+ +L+D +WD + +VR +RN+LC++ G+P P+L
Sbjct: 901 RIMCCVAQQASEKIDRFRAHAASVFLTLLHFDSPPIPHVPHRGELEKLFPRSDVASVNWSAPSQAFPRITQLLGLPTYRYHVLLGLVVSLGGLTESTIRHSTQSLFEYMKGIQSDPQALGSFSGTLLQIFEDNLLNERVSVPLLKTLDHVLTHGCFDIF---TTEEDHPFAVKLLALCKKEIKNSKDIQKLLSGIAVFCEMVQFPGDVRRQALLQLCLLLCHRFPLIRKTTASQVYETLLTYSDVVGADVLDEVVTVLSDTAWDAELAVVREQRNRLCDLLGVPRPQL 1185 The following BLAST results are available for this feature:
BLAST of TCONS_00045758 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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