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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045754 ID=TCONS_00045754|Name=TCONS_00045754|organism=Clytia hemisphaerica|type=transcript|length=2280bpRun BLAST on NCBI transcript from alignment at scaffold_100:751300..772221- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00045754 ID=TCONS_00045754|Name=TCONS_00045754|organism=Clytia hemisphaerica|type=transcript|length=20922bp|location=Sequence derived from alignment at scaffold_100:751300..772221- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00045754 vs. Swiss-Prot (Human)
Match: TMC7 (Transmembrane channel-like protein 7 OS=Homo sapiens GN=TMC7 PE=1 SV=1) HSP 1 Score: 285.804 bits (730), Expect = 2.456e-84 Identity = 210/661 (31.77%), Postives = 345/661 (52.19%), Query Frame = 2
Query: 350 TPNVDDGRSKSLVRSDVAGIIDMEDGLHED----ELRSIPAPMAQRKSVRRMNQTLKQSEKERQKSLSCWKFFKLRVAMGWYRFKSNLKEFLKVLELWRSPLKEVEGHFGNGVLSYFIFLKSXXXXXXXXXXXXXXXXXXPQVVINYGELVQNITQNYIVTVDSTTANFTCPNEDKDFYKNRTLSNNILDFFTGEGYINTTLMFYSNYQGDIYTSVSNNDITYNMELAYICVGGAYLIISLIMMVKNLAQGFTESIVIPCSGRI*KF*FFLSSLAQGFTESIVETGGFFYSYCNKVFAGWDYCITDSKAAFLKCKSIAKDFKAELSEEKRLERIKGRTQFDKLKIYSFRMLVTIIVLGLLAVSIFAIIKAVEVSSNPELSRETNSVLV---ILKRWASSLTISALNVCLPFIFEILTSLEDWSPRVEVALTLWRXXXXXXXXXXXXXITL---FTSYSEHDCHIC---------WENQVGSQMFNLILIDFFVSVGITIFGETGRKYIYRYLGCGCNLGEKIGMQEFQIPKNVLELVYGQSLIWIGTFFAPLIPVVGIIKLFILFYVKKISLMLNCKPSSQPYQGARSNYXXXXXXXXXXXXCSFAVGWGLTRIKTS-CCGPFKNVGCVADYEMMDVVGRTIDSWPSWIGGIIDFIKTTAF 2272
T + D +S +L++ + +ED + E+ LR+ +++++ +R + +T + K LS W +K + W RF +E LELWR ++ +EG FG G+ SYF FL+ L+LLNLVIF ++F +++P ++ Y IT + V + + C + I+D +G G++ T +FY +Y D V + TY++ LAY+ A L +SL+ +VK +GF +++ + F SYCNK+FAGWD+CIT+ A LK S+ + +A+L EE+ ++I RT + ++IYS R+ + IVL +L +AI A V S + +E + ++ + + S+ I+ N P IF + ED+SP E+ LT+ R V ++LA++ VLV TL TS + C +C WE QVG +M+ L++ DF + + +T+F + RK + Y C L + G QEF IP NVL +VYGQ++ WIG FF+PL+P + +K I+FYVK+ SL+ C+PS +P++ + SN+FF L+LL+ L + ++RI +S CGPF N +V+ +T+ ++PS + I + + AF
Sbjct: 55 TVHSRDKQSGTLLKPTDSYSSQLEDRIAENLSSHSLRNYALNISEKRRLRDIQET-------QMKYLSEWDQWKRYSSKSWKRFLEKAREMTTHLELWREDIRSIEGKFGTGIQSYFSFLRFLVLLNLVIFLIIFMLVLLPVLLTKY-----KITNSSFVLIPFKDMDKQCTVYPVSSSGLIYFYSYIIDLLSGTGFLEETSLFYGHYTID---GVKFQNFTYDLPLAYLLSTIASLALSLLWIVKRSVEGFKINLI--------------------------RSEEHFQSYCNKIFAGWDFCITNRSMADLKHSSLRYELRADLEEERMRQKIAERTSEETIRIYSLRLFLNCIVLAVLGACFYAIYVAT-VFSQEHMKKEIDKMVFGENLFILYLPSIVITLANFITPMIFAKIIRYEDYSPGFEIRLTILRCVFMRLATICVLVFTLGSKITSCDDDTCDLCGYNQKLYPCWETQVGQEMYKLMIFDFIIILAVTLFVDFPRKLLVTYCS-SCKLIQCWGQQEFAIPDNVLGIVYGQTICWIGAFFSPLLPAIATLKFIIIFYVKEWSLLYTCRPSPRPFRASNSNFFFLLVLLIGLCLAIIPLTISISRIPSSKACGPFTNFNTT-----WEVIPKTVSTFPSSLQSFIHGVTSEAF 667 The following BLAST results are available for this feature:
BLAST of TCONS_00045754 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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