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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045743 ID=TCONS_00045743|Name=TCONS_00045743|organism=Clytia hemisphaerica|type=transcript|length=3351bpRun BLAST on NCBI protein sequence of TCONS_00045743-protein >TCONS_00045743-protein ID=TCONS_00045743-protein|Name=TCONS_00045743-protein|organism=Clytia hemisphaerica|type=polypeptide|length=878bp MMKPYSGYNWWKISFLLTIFLTSGCLVTLFQLGVLQIRLPSKDVGRHLVRRun BLAST on NCBI transcript from alignment at scaffold_100:690941..706379- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00045743 ID=TCONS_00045743|Name=TCONS_00045743|organism=Clytia hemisphaerica|type=transcript|length=15439bp|location=Sequence derived from alignment at scaffold_100:690941..706379- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_100:690941..706379- >TCONS_00045743 ID=TCONS_00045743|Name=TCONS_00045743|organism=Clytia hemisphaerica|type=CDS|length=50103bp|location=Sequence derived from alignment at scaffold_100:690941..706379- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00045743 vs. Swiss-Prot (Human)
Match: FOLH1 (Glutamate carboxypeptidase 2 OS=Homo sapiens GN=FOLH1 PE=1 SV=1) HSP 1 Score: 421.394 bits (1082), Expect = 2.677e-131 Identity = 236/635 (37.17%), Postives = 358/635 (56.38%), Query Frame = 1
Query: 883 APNIERNLVYLSSKSHLGGTKESAEFAAWMSDQFKLAKLDNVQVAKYNVLCSYPTKA--GKIVFEGKDGEKDRELEILEEKLDSFEKSTNNSVYPPYLAYSMPSTEEGELVYANYGDDEDFRKL-KEMGLDCKDKILFIRYGKLARNKKIKAAEECGAKGVILFSDPLVY-SPTGTWYPDTWYLPPDGVMRGTLAQRRG--DALTRGYPAIPGFYRRPISEVTFYPKIPVQPIGFGHAEKIFKQLDGRPVPEG-WSGGLNISYHVNSK-SGN----KAKLLINVTKEMREIQNVIGIIEGTYEPDRLVLVGNHRDAWGYGAADPSSGTAVLVEMARVLGELKKEGWKPRRTIMICSWDAEEFGLLGSTEWTEQYAKVLSQQAVAYVNVDTAVQGNHTIALRSTPELADVFFDTAQRFKDPD---SSENLYDSWLRKHRKKENDQRKEPKVTIFREGSDYMPFYGDLGIPSLDFRYMFDEDALGVYNIPVYHTMHDNINWMRKFVDPDFRYHAAITQVLTRIILLLADSTLLPFN-------LIRYSDSMWARVKRLRHVIDKHDVGGECDISLLTDLVAKLQKVTRQFHRNVQLLDKEDELAVRQINDQMLLFERSFVANEDLIDDDKTRHVYHT 2721
A NI++ L + HL GT+++ + A + Q+K LD+V++A Y+VL SYP K I +DG + + E +E ++ + PP+ A+S EG+LVY NY EDF KL ++M ++C KI+ RYGK+ R K+K A+ GAKGVIL+SDP Y +P YPD W LP GV RG + G D LT GYPA YRR I+E P IPV PIG+ A+K+ +++ G P+ W G L + Y+V +GN K K+ I+ T E+ I NVIG + G EPDR V++G HRD+W +G DP SG AV+ E+ R G LKKEGW+PRRTI+ SWDAEEFGLLGSTEW E+ +++L ++ VAY+N D++++GN+T+ + TP + + + + K PD ++LY+SW +K E P+++ G+D+ F+ LGI S RY + + P+YH++++ + KF DP F+YH + QV ++ LA+S +LPF+ L +Y+D +++ + + + V + L V ++ +F +Q DK + + +R +NDQ++ ER+F+ L D RHV +
Sbjct: 67 AENIKKFLYNFTQIPHLAGTEQNFQLAKQIQSQWKEFGLDSVELAHYDVLLSYPNKTHPNYISIINEDGNEIFNTSLFEPPPPGYENVSD--IVPPFSAFSPQGMPEGDLVYVNYARTEDFFKLERDMKINCSGKIVIARYGKVFRGNKVKNAQLAGAKGVILYSDPADYFAPGVKSYPDGWNLPGGGVQRGNILNLNGAGDPLTPGYPANEYAYRRGIAEAVGLPSIPVHPIGYYDAQKLLEKMGGSAPPDSSWRGSLKVPYNVGPGFTGNFSTQKVKMHIHSTNEVTRIYNVIGTLRGAVEPDRYVILGGHRDSWVFGGIDPQSGAAVVHEIVRSFGTLKKEGWRPRRTILFASWDAEEFGLLGSTEWAEENSRLLQERGVAYINADSSIEGNYTLRVDCTPLMYSLVHNLTKELKSPDEGFEGKSLYESWTKKSPSPEFSGM--PRISKLGSGNDFEVFFQRLGIASGRARYTKNWETNKFSGYPLYHSVYETYELVEKFYDPMFKYHLTVAQVRGGMVFELANSIVLPFDCRDYAVVLRKYADKIYSISMKHPQEMKTYSVSFDS----LFSAVKNFTEIASKFSERLQDFDKSNPIVLRMMNDQLMFLERAFIDPLGLPDRPFYRHVIYA 693 The following BLAST results are available for this feature:
BLAST of TCONS_00045743 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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