TCONS_00045730 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045730
Unique NameTCONS_00045730
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1359

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045730 ID=TCONS_00045730|Name=TCONS_00045730|organism=Clytia hemisphaerica|type=transcript|length=1359bp
CTAGTaatttatataagatatctgtgctCAGTTTACATAAATATGTTGTT
AAGCAACAATGTGAAGTTTCAAATGGGTGTTGATCATGGCGCTCTAAATT
CAGCATAGTACCAATAAAACCTTAGCTTTCAGATGTGACAGAGTTGTTGA
AAAGCTGCCGTTCTGTCTTTTACAATTTAGTTGAACTTTAGTTCAGTTCT
CCGTTTGTTTGGCTCAAAGAGCTCGTGGACCCTGTGACGATCGACCCGGC
CGCACTACGGGGTCCCATAGCATAAGTGTGATATTGCTTCTTAGTCGTGT
ATCGAATCATTCCTTTGTGGCTTGCTAAACTGTCGTTAGTGTCCAGGCCT
TCAGTTGAATGCCCGTCTGTTGAACAAAGAGATTTGTAATATGATTTAAT
ACGAGAATTCCGGGATAAATATATCATAGCGTTGACAGCAGAGTTGATTT
GAGTCGGCAGGAAACAGTATATTAATGATATAGCGACACGCCTCATTGTT
TCACGGTCGGTCGTGTATAGAGCATAAAAACCGGCTGTTCCGGTTGCAAC
GGTACCCGGTATATAACAAATAATCAACGCTGCGGAAATCATACTTATAG
TCCGGGAGAGGATGTTCTCGACTCGGTTATGGCTCGTCAGCGTCGTATCT
TTTCGTGATAATTTTACATGACGTACCATCTTGATATTAAGAACCAAAAC
AGAAAATAGAATCCCGAATTGGAATATGGATAACCCGATAAAAAATGCGG
CTGACATTACTTTATCTATTGTTTGTGTTATAAAAACATACCACAGAGCC
CATCCAAGGCTTATAGTGATTTCCACCAAAACGATACCAATTAAAAGCCA
CTTACCAGAGAACCATTTATGGTAAAAGCTATTATTGACCATCATTAAAT
ACCGGTCAAAAGTGATCACCAAAATATTTGTACCGGACAAGACGACCGGA
AATGCACTCCAAAACGCCCGGATACCTGCCCGGATGCATGTTATATTAGG
TACTAAATTCACGTAATAGATCTGTAACGGCATTAGTACTAAACCTGCTA
ACAGATCTGATGCGCATAAGAATAGAAAGAGTTTGTTAGAATTAgtgaat
ttgtttttctttcttgtcttACATATGCCAATTACTAATAATATGTTGAA
TATGATGATTGCTACCATGTTTATCGAATAGATACTGGTCAAAATGGTCG
TATGCACACCTCCTACCGTATCCTCCCGGTAAATCGGGATACATTCGGGT
AGCCTGAACATCGGACGGCTTGTATTGTTCGGAAGCATCGGTGGAAACAT
GTGGTTTTGATTCtttctttgttgttttcttgtgattttttttccttttt
gtattTCAC
Run BLAST on NCBI

transcript from alignment at scaffold_100:350799..352157-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045730 ID=TCONS_00045730|Name=TCONS_00045730|organism=Clytia hemisphaerica|type=transcript|length=1359bp|location=Sequence derived from alignment at scaffold_100:350799..352157- (Clytia hemisphaerica)
CTAGTAATTTATATAAGATATCTGTGCTCAGTTTACATAAATATGTTGTT
AAGCAACAATGTGAAGTTTCAAATGGGTGTTGATCATGGCGCTCTAAATT
CAGCATAGTACCAATAAAACCTTAGCTTTCAGATGTGACAGAGTTGTTGA
AAAGCTGCCGTTCTGTCTTTTACAATTTAGTTGAACTTTAGTTCAGTTCT
CCGTTTGTTTGGCTCAAAGAGCTCGTGGACCCTGTGACGATCGACCCGGC
CGCACTACGGGGTCCCATAGCATAAGTGTGATATTGCTTCTTAGTCGTGT
ATCGAATCATTCCTTTGTGGCTTGCTAAACTGTCGTTAGTGTCCAGGCCT
TCAGTTGAATGCCCGTCTGTTGAACAAAGAGATTTGTAATATGATTTAAT
ACGAGAATTCCGGGATAAATATATCATAGCGTTGACAGCAGAGTTGATTT
GAGTCGGCAGGAAACAGTATATTAATGATATAGCGACACGCCTCATTGTT
TCACGGTCGGTCGTGTATAGAGCATAAAAACCGGCTGTTCCGGTTGCAAC
GGTACCCGGTATATAACAAATAATCAACGCTGCGGAAATCATACTTATAG
TCCGGGAGAGGATGTTCTCGACTCGGTTATGGCTCGTCAGCGTCGTATCT
TTTCGTGATAATTTTACATGACGTACCATCTTGATATTAAGAACCAAAAC
AGAAAATAGAATCCCGAATTGGAATATGGATAACCCGATAAAAAATGCGG
CTGACATTACTTTATCTATTGTTTGTGTTATAAAAACATACCACAGAGCC
CATCCAAGGCTTATAGTGATTTCCACCAAAACGATACCAATTAAAAGCCA
CTTACCAGAGAACCATTTATGGTAAAAGCTATTATTGACCATCATTAAAT
ACCGGTCAAAAGTGATCACCAAAATATTTGTACCGGACAAGACGACCGGA
AATGCACTCCAAAACGCCCGGATACCTGCCCGGATGCATGTTATATTAGG
TACTAAATTCACGTAATAGATCTGTAACGGCATTAGTACTAAACCTGCTA
ACAGATCTGATGCGCATAAGAATAGAAAGAGTTTGTTAGAATTAGTGAAT
TTGTTTTTCTTTCTTGTCTTACATATGCCAATTACTAATAATATGTTGAA
TATGATGATTGCTACCATGTTTATCGAATAGATACTGGTCAAAATGGTCG
TATGCACACCTCCTACCGTATCCTCCCGGTAAATCGGGATACATTCGGGT
AGCCTGAACATCGGACGGCTTGTATTGTTCGGAAGCATCGGTGGAAACAT
GTGGTTTTGATTCTTTCTTTGTTGTTTTCTTGTGATTTTTTTTCCTTTTT
GTATTTCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029224XLOC_029224Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045730-exon-scaffold_100-1575043694:350799..352157TCONS_00045730-exon-scaffold_100-1575043694:350799..352157Clytia hemisphaericaexon
TCONS_00045730-exon-scaffold_100-1510915933:350799..352157TCONS_00045730-exon-scaffold_100-1510915933:350799..352157Clytia hemisphaericaexon
TCONS_00045730-exon-scaffold_100-1491911889:350799..352157TCONS_00045730-exon-scaffold_100-1491911889:350799..352157Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_100supercontigscaffold_100:350799..352157 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0308502	0.0326668	0.0349302	0.102521	30.8425	22.8407	13.1835	14.6607	3.32247	6.65717	2.17033	1.57968	2.6278	2.48418	1.98236	2.26717	4.8753	6.19888	4.57331	3.97368	2.52459	2.32122	0.492517	0.578853	0.208954	1.05457	0.73121	0.35163	0.420243	0.107584
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045730 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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