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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045723 ID=TCONS_00045723|Name=TCONS_00045723|organism=Clytia hemisphaerica|type=transcript|length=771bp
CGCCACTTTTTTCACAATCAATATATTTCGAGAAAAGATAATAATCGTTT
ATTAAAAAACTAATAtaataacaataggcagacactgtcctgatatgaaa
tatgtgtctgatatgaaacggaaactcttatgtaaaataaaaccttttaa
aaaactttgttGGGCATATCCTTCTGACTTATTTTATAGTTTTGGAGAAA
TTAAATTCATGGATAATTTTGAAGGAATTCAGATTTAATACGAATATTTC
AAGCAGAAACTAATTTCCCaagatttaaaatgtttttccttttttttgat
ttatagcatttaaacataacaaaaatttaattatgtcaaaatgaaGTGAG
TGAAGAGCAGACATCAAGAGGTGGATTTGGATATTGTTTGGTTGTGACTG
TGACGACGAACAGCAGAACGTTCTGATCACATATTACAACAATCAGCATC
TTCACCATCGCCTCCAGGGACCATCGGTGTCCACCAAGCGAACACCAGAT
ATCCGAAACCATACCCCAGGAGAATGGACACACATACTAAAGAATTGTAC
GTCATGAAAGCCAACATGAGAAGATAACCAAGGAACACTTGAATGATGTG
TAACACAGTCTGGATCAGGTGGACAATGAGTCGTTGTTGTAAACTATTAT
AAAATAAACAGTGAAAGGTATGTAACTTTCTAatttaaaggccggtctcc
acttgcgcgcgctgcgatcgcaactttggcttcaatcatttttgctttga
gaaaagattacgtcataaaaa Run BLAST on NCBI transcript from alignment at scaffold_100:215973..217624- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045723 ID=TCONS_00045723|Name=TCONS_00045723|organism=Clytia hemisphaerica|type=transcript|length=1652bp|location=Sequence derived from alignment at scaffold_100:215973..217624- (Clytia hemisphaerica)
CGCCACTTTTTTCACAATCAATATATTTCGAGAAAAGATAATAATCGTTT
ATTAAAAAACTAATATAATAACAATAGGCAGACACTGTCCTGATATGAAA
TATGTGTCTGATATGAAACGGAAACTCTTATGTAAAATAAAACCTTTTAA
AAAACTTTGTTGGGCATATCCTTCTGACTTATTTTATAGTTTTGGAGAAA
TTAAATTCATGGATAATTTTGAAGGAATTCAGATTTAATACGAATATTTC
AAGCAGAAACTAATTTCCCAAGATTTAAAATGTTTTTCCTTTTTTTTGAT
TTATAGCATTTAAACATAACAAAAATTTAATTATGTCAAAATGAAGTGAG
TGAAGAGCAGACATCAAGAGGTGGATTTGGATATTGTTTGGTTGTGACTG
TGACGACGAACAGCAGGTACTTATCATACATCTCATGCTCCTCTTGGGCA
TTGAATTCCTATTCCCACAAAGAAGTATGTTATAACAGCGGTTACAGAAG
GTACCTTAATGCCATAAATTATCGTGCCCCTTTTATTTTCGCGCAGAATA
CGTGCCCGAAAATAAAAGGCGCGCGAAATAGGCCTATTTTAATAAAATGG
GACCTCGATTCATGGTAAATATGCCTCTGGAATGTAAAATCTAGCTTGAA
TACACACTGAAAGTGAGTAAAACTCACTTAAAATCATCAAAAACACTTTT
AAAAAAACAATTAAAGAATGCGCGAATGTTCTATTTTACGAGCTGCGCGA
AAACAAAAGGCGCAAAAATTAAGGGAATTAAGGTATTCAAAATGGCGGAG
AGTTTCTTTTGTTGTTATTTCTTTTATTTGCTCTCCACAAACGATTTCGA
TCACCTTTAGACTTTGCAACCACTGTTGACTCACCTTCATTGCAGTATAT
ACTTGTCAACCATAAGAACTCGAAACCATCATTACATTTGGTTTTAAAAA
CTACTTAAATGTCTGAAAATTTCGCGAGTCCCGACCATTCGCAAAGATTT
TCAAATCATGAGAATAGAGTAAAAAGTTATCTTCCATTTAAAAAACTAAG
TAAAGAATCATGAGAATAGAGTAAAAAACTTTTGACATTTAACTATATTC
CAAAAAGAAATTATATGAAATTGCCTGAAGATTGTCACAAAGGTGGCATG
AAACTGCCAGTAGCAGAATAAAAAAGTGTTTTAGTTGCCTGAAGATATTG
TCACCAAAGTGGCATGAAACTGCCAGTAGCAGAATAAAAAAGTTTCTTCC
TGACTATTAATAAGTAAAGAAATATTCATCTTTTCCACATTCTACAGAAC
GTTCTGATCACATATTACAACAATCAGCATCTTCACCATCGCCTCCAGGG
ACCATCGGTGTCCACCAAGCGAACACCAGATATCCGAAACCATACCCCAG
GAGAATGGACACACATACTAAAGAATTGTACGTCATGAAAGCCAACATGA
GAAGATAACCAAGGAACACTTGAATGATGTGTAACACAGTCTGGATCAGG
TGGACAATGAGTCGTTGTTGTAAACTATTATAAAATAAACAGTGAAAGGT
ATGTAACTTTCTAATTTAAAGGCCGGTCTCCACTTGCGCGCGCTGCGATC
GCAACTTTGGCTTCAATCATTTTTGCTTTGAGAAAAGATTACGTCATAAA
AA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045723-exon-scaffold_100-1575043694:217209..217624 | TCONS_00045723-exon-scaffold_100-1575043694:217209..217624 | Clytia hemisphaerica | exon |
| TCONS_00045723-exon-scaffold_100-1575043694:215973..216327 | TCONS_00045723-exon-scaffold_100-1575043694:215973..216327 | Clytia hemisphaerica | exon |
| TCONS_00045723-exon-scaffold_100-1510915933:217209..217624 | TCONS_00045723-exon-scaffold_100-1510915933:217209..217624 | Clytia hemisphaerica | exon |
| TCONS_00045723-exon-scaffold_100-1510915933:215973..216327 | TCONS_00045723-exon-scaffold_100-1510915933:215973..216327 | Clytia hemisphaerica | exon |
| TCONS_00045723-exon-scaffold_100-1491911889:217209..217624 | TCONS_00045723-exon-scaffold_100-1491911889:217209..217624 | Clytia hemisphaerica | exon |
| TCONS_00045723-exon-scaffold_100-1491911889:215973..216327 | TCONS_00045723-exon-scaffold_100-1491911889:215973..216327 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_100 | supercontig | scaffold_100:215973..217624 - |
Blast
The following BLAST results are available for this feature:
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