TCONS_00045717 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045717
Unique NameTCONS_00045717
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1609

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045717 ID=TCONS_00045717|Name=TCONS_00045717|organism=Clytia hemisphaerica|type=transcript|length=1609bp
cgttttgacaaccaggggtatactgtaaaaattttatcaaacaaatttat
gcccaaaaccctctaaatcacatttcaaaactatggtcaaaattttgtat
tcatatcttaagttaaagatatctcgagacaTCNttttacgcCCTTGTGC
ACAATGTTTATGACTTTTGGCACATTTAGACTGCACTAATATACTGCCAA
TATTGTATCTgtgtcatttttttaatttctacaaattatttttcaccTAA
TTGTATATTTCAGATAAAATAATGTTCCAAGATcaggaaaagaaaacatt
aataATTGCAGGTACTGTTGCAGTATCAGTTGGCATTTTAACCTATTTAT
GGAAAAGATGGGTATCTGGTGACAAAGTAACAAAAATTGCTCTTAACCCA
CAGCAAAAAATTCCATTCAAGCTAATTGAGAAACATATCATTTCTCATGA
CACCAGAAGATTTAGATTTGCTCTTCAAACTCCTGAGCATGTTCTTGGAT
TACCTGTAGGTAAACATATGTATCTCTCTGCACACATTGATGGAAAGCTT
GTCATCCGGCCCTACACACCCGTTACCTCAGATGATGAGCTCGGCTATTT
TGATCTTGTCATCAAAGTGTATTTCAAGAATGTCCATCCCAAATTTCCCG
AAGGAGGAAAAATGTCACAACATCTAGAATCAATGGAGATAGGTGATACT
ATTGATGTTCGTGGACCGTCAGGTCACTACACTTATAAAGGTCAGGGTGT
TTTTGAAGTTGAGGAAAACCGCAAGGAGAAGAAAATCATGCGATGTAAGA
AAATTGGTATGATTGCTGGGGGAACTGGTATTACCCCAATGCTACAGGtg
gttaatgatattttgaaGCATCCAGAAGATAAAACAGAGGTTTCTCTATT
GTTTGCCAACCAAACAGAAGAGGATATTTTATTACGAGAAGAAATTGAAG
GAATGGTTGAAGAAAACCCAGGGCGTCTTCATGTTTGGTATACACTTGAT
CGGGCGCAAGAAAATTGGTCTTACAGCTCAGGCTTTGTTAACGAAGAAAT
GATCAAAGAGCACTTACCAAGAAGTGATGACCATTCAGTGATTTTGATGT
GCGGCCCACCACCAATGATTAAATTTGCATGTATTCCTAATCTGGAAAAA
CTTGGATTCAAACCTGACCAGTACTTCTCATTCTAATAAACACAAacaaa
ttattGATCCTCAAACAAGCAAATTGATTTAGTTAGTTTTctttatttga
aattatttttaaagcTAAAGACCAATAAGATTTTTCTTATACATCTATTC
AAAtttgtttcaattaattttatcaaatttacgATTATTTTTCGAAACCG
TCTACTACATGGTCCAAAACATTTTCTtatcaaacattttttatagCATT
ATGAGATTATTCAATAactttttggaaatatttttttgttcatgTTCTCA
TGTTCCATAGtcatttctcattttttattttggaagaAATATTACAAATG
TAAGGCTTTGCATCTTTGTTTCCCTGAATAATAGTACAGTATGCCGTTCA
TATATAGATGAATATTTCTGTCCAATGTACCTGTGGTAACAAAGATGGGC
GAACCTTTC
Run BLAST on NCBI

protein sequence of TCONS_00045717-protein

>TCONS_00045717-protein ID=TCONS_00045717-protein|Name=TCONS_00045717-protein|organism=Clytia hemisphaerica|type=polypeptide|length=304bp
MFQDQEKKTLIIAGTVAVSVGILTYLWKRWVSGDKVTKIALNPQQKIPFK
LIEKHIISHDTRRFRFALQTPEHVLGLPVGKHMYLSAHIDGKLVIRPYTP
VTSDDELGYFDLVIKVYFKNVHPKFPEGGKMSQHLESMEIGDTIDVRGPS
GHYTYKGQGVFEVEENRKEKKIMRCKKIGMIAGGTGITPMLQVVNDILKH
PEDKTEVSLLFANQTEEDILLREEIEGMVEENPGRLHVWYTLDRAQENWS
YSSGFVNEEMIKEHLPRSDDHSVILMCGPPPMIKFACIPNLEKLGFKPDQ
YFSF
Run BLAST on NCBI

transcript from alignment at scaffold_100:60958..62645-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045717 ID=TCONS_00045717|Name=TCONS_00045717|organism=Clytia hemisphaerica|type=transcript|length=1688bp|location=Sequence derived from alignment at scaffold_100:60958..62645- (Clytia hemisphaerica)
CGTTTTGACAACCAGGGGTATACTGTAAAAATTTTATCAAACAAATTTAT
GCCCAAAACCCTCTAAATCACATTTCAAAACTATGGTCAAAATTTTGTAT
TCATATCTTAAGTTAAAGATATCTCGAGACATCNTTTTACGCCCTTGTGC
ACAATGTTTATGACTTTTGGCACATTTAGACTGCACTAATATACTGCCAA
TATTGTATCTGTGTCATTTTTTTAATTTCTACAAATTATTTTTCACCTAA
TTGTATATTTCAGATAAAATAATGTTCCAAGATCAGGAAAAGAAAACATT
AATAATTGCAGGTACTGTTGCAGTATCAGTTGGCATTTTAACCTATTTAT
GGAAAAGATGGGTATCTGGTGACAAAGTAACAAAAATTGCTCTTAACCCA
CAGCAAAAAATTCCATTCAAGCTAATTGAGAAACATATCATTTCTCATGA
CACCAGAAGATTTAGATTTGCTCTTCAAACTCCTGAGCATGTTCTTGGAT
TACCTGTAGGTAAACATATGTATCTCTCTGCACACATTGATGGAAAGCTT
GTCATCCGGCCCTACACACCCGTTACCTCAGATGATGAGCTCGGCTATTT
TGATCTTGTCATCAAAGTGTATTTCAAGAATGTCCATCCCAAATTTCCCG
AAGGAGGAAAAATGTCACAACATCTAGAATCAATGGAGATAGGTGATACT
ATTGATGTTCGTGGACCGTCAGGTCACTACACTTATAAAGGTCAGGGTGT
TTTTGAAGTTGAGGAAAACCGCAAGGAGAAGAAAATCATGCGATGTAAGA
AAATTGGTATGATTGCTGGGGGAACTGGTATTACCCCAATGCTACAGGTG
GTTAATGATATTTTGAAGCATCCAGAAGATAAAACAGAGGTTTCTCTATT
GTTTGCCAACCAAACAGAAGAGGATATTTTATTACGAGAAGAAATTGAAG
GAATGGTTGAAGAAAACCCAGGGCGTCTTCATGTTTGGTATACACTTGAT
CGGGCGCAAGAAAATTGGTCTTACAGCTCAGGCTTTGTTAACGAAGAAAT
GATCAAAGAGCACTTACCAAGAAGTGATGACCATTCAGTGATTTTGATGT
GCGGCCCACCACCAATGATTAAATTTGCATGTATTCCTAATCTGGAAAAA
CTTGGATTCAAACCTGACCAGTACTTCTCATTCTAATAAACACAAATTCT
TGATCCTCAAACAAGCAAATTGNTCTGGAAAAACTTGGATTCAAACCTGA
CCAGTACTTCTCATTCTAATAAACACAAATTATTGATCCTCAAACAAGCA
AATTGATTTAGTTAGTTTTCTTTATTTGAAATTATTTTTAAAGCTAAAGA
CCAATAAGATTTTTCTTATACATCTATTCAAATTTGTTTCAATTAATTTT
ATCAAATTTACGATTATTTTTCGAAACCGTCTACTACATGGTCCAAAACA
TTTTCTTATCAAACATTTTTTATAGCATTATGAGATTATTCAATAACTTT
TTGGAAATATTTTTTTGTTCATGTTCTCATGTTCCATAGTCATTTCTCAT
TTTTTATTTTGGAAGAAATATTACAAATGTAAGGCTTTGCATCTTTGTTT
CCCTGAATAATAGTACAGTATGCCGTTCATATATAGATGAATATTTCTGT
CCAATGTACCTGTGGTAACAAAGATGGGCGAACCTTTC

Coding sequence (CDS) from alignment at scaffold_100:60958..62645-

>TCONS_00045717 ID=TCONS_00045717|Name=TCONS_00045717|organism=Clytia hemisphaerica|type=CDS|length=915bp|location=Sequence derived from alignment at scaffold_100:60958..62645- (Clytia hemisphaerica)
ATGTTCCAAGATCAGGAAAAGAAAACATTAATAATTGCAGGTACTGTTGC
AGTATCAGTTGGCATTTTAACCTATTTATGGAAAAGATGGGTATCTGGTG
ACAAAGTAACAAAAATTGCTCTTAACCCACAGCAAAAAATTCCATTCAAG
CTAATTGAGAAACATATCATTTCTCATGACACCAGAAGATTTAGATTTGC
TCTTCAAACTCCTGAGCATGTTCTTGGATTACCTGTAGGTAAACATATGT
ATCTCTCTGCACACATTGATGGAAAGCTTGTCATCCGGCCCTACACACCC
GTTACCTCAGATGATGAGCTCGGCTATTTTGATCTTGTCATCAAAGTGTA
TTTCAAGAATGTCCATCCCAAATTTCCCGAAGGAGGAAAAATGTCACAAC
ATCTAGAATCAATGGAGATAGGTGATACTATTGATGTTCGTGGACCGTCA
GGTCACTACACTTATAAAGGTCAGGGTGTTTTTGAAGTTGAGGAAAACCG
CAAGGAGAAGAAAATCATGCGATGTAAGAAAATTGGTATGATTGCTGGGG
GAACTGGTATTACCCCAATGCTACAGGTGGTTAATGATATTTTGAAGCAT
CCAGAAGATAAAACAGAGGTTTCTCTATTGTTTGCCAACCAAACAGAAGA
GGATATTTTATTACGAGAAGAAATTGAAGGAATGGTTGAAGAAAACCCAG
GGCGTCTTCATGTTTGGTATACACTTGATCGGGCGCAAGAAAATTGGTCT
TACAGCTCAGGCTTTGTTAACGAAGAAATGATCAAAGAGCACTTACCAAG
AAGTGATGACCATTCAGTGATTTTGATGTGCGGCCCACCACCAATGATTA
AATTTGCATGTATTCCTAATCTGGAAAAACTTGGATTCAAACCTGACCAG
TACTTCTCATTCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029218XLOC_029218Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045717-proteinTCONS_00045717-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045717-exon-scaffold_100-1575043694:61451..62645TCONS_00045717-exon-scaffold_100-1575043694:61451..62645Clytia hemisphaericaexon
TCONS_00045717-exon-scaffold_100-1575043694:60958..61371TCONS_00045717-exon-scaffold_100-1575043694:60958..61371Clytia hemisphaericaexon
TCONS_00045717-exon-scaffold_100-1510915933:61451..62645TCONS_00045717-exon-scaffold_100-1510915933:61451..62645Clytia hemisphaericaexon
TCONS_00045717-exon-scaffold_100-1510915933:60958..61371TCONS_00045717-exon-scaffold_100-1510915933:60958..61371Clytia hemisphaericaexon
TCONS_00045717-exon-scaffold_100-1491911889:61451..62645TCONS_00045717-exon-scaffold_100-1491911889:61451..62645Clytia hemisphaericaexon
TCONS_00045717-exon-scaffold_100-1491911889:60958..61371TCONS_00045717-exon-scaffold_100-1491911889:60958..61371Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_100supercontigscaffold_100:60958..62645 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
162.909	167.338	70.8669	54.5389	31.0286	25.2104	40.126	41.3892	34.7604	32.8355	31.7311	25.4357	29.92	30.4001	33.2114	35.4889	45.6833	45.2854	15.9364	20.8914	38.4546	37.9257	75.1028	66.5026	33.4052	37.5913	28.9604	25.237	52.2128	48.3697
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001709Flavoprot_Pyr_Nucl_cyt_Rdtase
IPR001834NADH-Cyt_B5_reductase
IPR001433OxRdtase_FAD/NAD-bd
IPR008333OxRdtase_FAD-bd_dom
IPR017927Fd_Rdtase_FAD-bd
IPR017938Riboflavin_synthase-like_b-brl
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0016491oxidoreductase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0016491 oxidoreductase activity
Blast
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BLAST of TCONS_00045717 vs. Swiss-Prot (Human)
Match: NB5R3 (NADH-cytochrome b5 reductase 3 OS=Homo sapiens GN=CYB5R3 PE=1 SV=3)

HSP 1 Score: 352.443 bits (903), Expect = 3.180e-117
Identity = 161/264 (60.98%), Postives = 208/264 (78.79%), Query Frame = 2 
Query:  395 NPQQKIPFKLIEKHIISHDTRRFRFALQTPEHVLGLPVGKHMYLSAHIDGKLVIRPYTPVTSDDELGYFDLVIKVYFKNVHPKFPEGGKMSQHLESMEIGDTIDVRGPSGHYTYKGQGVFEVEENRKEKKIMR-CKKIGMIAGGTGITPMLQVVNDILKHPEDKTEVSLLFANQTEEDILLREEIEGMVEENPGRLHVWYTLDRAQENWSYSSGFVNEEMIKEHLPRSDDHSVILMCGPPPMIKFACIPNLEKLGFKPDQYFSF 1183
            +P  K P +LI++ IISHDTRRFRFAL +P+H+LGLPVG+H+YLSA IDG LV+RPYTP++SDD+ G+ DLVIKVYFK+ HPKFP GGKMSQ+LESM+IGDTI+ RGPSG   Y+G+G F +  ++K   I+R  K +GMIAGGTGITPMLQV+  I+K P+D T   LLFANQTE+DILLR E+E +  ++  R  +WYTLDRA E W Y  GFVNEEMI++HLP  ++  ++LMCGPPPMI++AC+PNL+ +G   ++ F F
Sbjct:   38 SPDIKYPLRLIDREIISHDTRRFRFALPSPQHILGLPVGQHIYLSARIDGNLVVRPYTPISSDDDKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMQIGDTIEFRGPSGLLVYQGKGKFAIRPDKKSNPIIRTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTVCHLLFANQTEKDILLRPELEELRNKHSARFKLWYTLDRAPEAWDYGQGFVNEEMIRDHLPPPEEEPLVLMCGPPPMIQYACLPNLDHVGHPTERCFVF 301
The following BLAST results are available for this feature:
BLAST of TCONS_00045717 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NB5R33.180e-11760.98NADH-cytochrome b5 reductase 3 OS=Homo sapiens GN=... [more]
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