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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045711 ID=TCONS_00045711|Name=TCONS_00045711|organism=Clytia hemisphaerica|type=transcript|length=2800bp
GTGGAATAGGTATATTTTTAGTGTTTTAGATTGTATGAATTACTCAATGC
TTTGCAATGCTGATGTATTTTGCACATAGAAAAAAATATCAGATCACTGC
AAGAACCACAGTCAAAGTCTTGTATTTTTTTGTGGATGATAATAAAAAAC
TACTTTTGCAAAAGGTAAGATGAGTTACCAGGACACTATCATTGGTGTTT
TGCTCGATGTCTCTGGCTCCATGCGATGCAATATCAAAGGAAGACCAGAG
GGTGACAAAGGATGGATTGGAGCAGTTTTCAAATGTCTGGATAATTTATT
GGATAATGATATTAAAGGCAATCACAAGATATTCGCTTTATGTGTTGGTG
GGGCGGAAACAGGTGTTTTTGACCTTttaaaaacattggaaaatgGTAGA
CAACAGGGAGAGCAGGGTTTCGAATCTATCAATTTGTCTCACGAGGAAGT
GATTAGCTGGGCCTGTGTATTGTTGGAAACAAATGGTGCCACCGAACTGC
GCACTTGGGCTCCCATATGGAAACTGAAACGTGAAGTATCCCGCGAAGAT
GCAAGAGCCGTGCTTCGACTTTTAACAAATCTTTTAGAAAACGGAGATGA
CAGCACGATGCGCAAAATTGTATTTGATATCTTACCGAGAGCTTGTCGAG
TACACGTACCCATTGTGGCAGATATTGCGAGATTCAAAAACAATCTTTTA
CAAATGGATGGTTCATTACAAGCTGATAATGAAGATATTGAGCGTGTCAT
AAGACAAATCAAAGATTTAGTGGTTTCAAAAATAATACTCGACGAAAGCA
TTACCGCTTACAGCATTTCAAGAGCTTCTTCTATCCTTCGAATGTCTACT
GATAATAAAAAGGAGTTAACACAGCAAGATATTGAGGAAATCTTATCCAA
AGTAGAGCCCTATATTTATGGTGGCACCCCACTAAACGAAGCCTTAACCA
AGTGCCACCGGTTTTTTTCATCGTCACAATTTCGCGGTCATCGGAAAATG
TTGTTTGTCCTCTCAGATGGAGCCCCTACCGATACCGCCACTCAAGCTCC
GATAAAAGAAATGCACGATTCAGAAATCACTATCGTAAGCTGTTATATCA
CGCAAGATAACTTAAGGAATCCAAGACGACTATACGCAACTGAACAGCCA
GAATGGAAAAGACAAGATGAGCCTTTTTCCACATCAGGAGGCCTTTTGGG
GCTTTTTGGTAATGTTTTGAATCAACTATTACAGAGCAATGGAGCATCGT
TCATGTTTAACTTGAGTTCTTCTGTTGAAACACAATCGATTCCAAGAACT
ATTTTCGTCAAGAAGGGCTGGACAGTTGATGTCGAAAATAACCACGTCAA
ATTGTTTGCCCAGGTTAATCATCCTGATCTTGTTAACGAAGTCACAGAAT
TGGCAAAGAATATTTTGTTTTGCCAAGACGCTTTGTCTGATGTATTGACA
ACAATCGATCTCGACTTGTATATCAACCAAAAATTGAAAGGTTTTCAAGT
CTCAAGACAAGTTGGCGGAGTCTGTTTTGCACATGCGACAGCAACCGTTA
TGCATTTGGCCACTCACAGAATTGTTGACAGATATCAGGGTCGTGTGCCT
GCAGATTTCAACGTGTTCAATCGTGGCTGCGCATACCCAGATTTTCACAA
GCTCAAAGAGAAAATGATCGATCAATTCGGTAGAACACCTGAAGGAAATC
TTCATGATGACGGAGCTTACACAGATGAAGTATTGAAGAAGACGTGTCCA
AAACTCCGTCTCCAAGTGAGAGAAGTCGACTTACAAGGTGCATTGGCTGC
CGTCACAGCAAAACGACCTGTCGTCACAGACTTTGCACTAAACGCCCAAC
AATGGGACCAATTCTTCAGATTCTACCGAACCCAACCAACAGGTATTTTA
CCAAAAGAATTGATTCAAAATGCCCACCAACCGAAAGCAGAGCTCGAAGG
GCACGCAGTAGTACTGATTGGTTTCAATGGCAAATCACTTCAATTCATGA
ATTCATGGGGTACTGATTGGGGTGATAGTGGCTTTTTCCGTGTGTCTAAT
GATGGTGGCGTATTGCCTCTTCCTTATGTTAGGTTCTACGATGTGTATTG
GACCCTTAATGATTTGTACCAATGCGAAAAAGAAGCTTATCGAATAAAAG
GAAGAGCTTTGGCTGAGTCTCATATCAACCGTTTAAAGAGCTTACAAGTT
GCAACACATATGTGTCGTCTATGTCACAAATCTTCCAAAGTGATTGATTT
CAAAGGGAATATGAAGGAGGTGACGTGTCCAAAGTGCTACCGCAAATTCC
CAATGAAAAACGCGGGACCAGATATCTTGTTGGCCGTTTATTTGGCTTTG
CTACAAGTAAAAGAAAGCAAATGAAATggaaaataaaactttatcTTCAT
ATTAACAGAAAAACTAGCAAGGGATTTGCTCGCGTATTATAACATTATAC
AGGACCAGCAACGTTAAatacttaaaaatattttttatttcaatagtCAT
TTTCATGATCATTCTTATGTATATTTAATTTTACACATTATTTCGACCTG
TCTTGTTTTATATCCATGGCAATGGAACTGAGATTCCAGATTTTCCCAAC
CCTTACACAAGGACTGATGCCAGGTTTCAAAAAGACTAAGAGTGAAACTA
TGCCCGTGCCTCTTATATGTCTCGTTAGAACACATCATCATTTCTAGCTG
ATTGATTAACAAAGCCCTAATCAGAACacatcaaaatttctagctcaAAT
ATACTCTTGAAACATCGGGAAAAAAGGTCGTCTCACCTGCTGCTTTCGTT Run BLAST on NCBI protein sequence of TCONS_00045711-protein >TCONS_00045711-protein ID=TCONS_00045711-protein|Name=TCONS_00045711-protein|organism=Clytia hemisphaerica|type=polypeptide|length=734bp
MSYQDTIIGVLLDVSGSMRCNIKGRPEGDKGWIGAVFKCLDNLLDNDIKG
NHKIFALCVGGAETGVFDLLKTLENGRQQGEQGFESINLSHEEVISWACV
LLETNGATELRTWAPIWKLKREVSREDARAVLRLLTNLLENGDDSTMRKI
VFDILPRACRVHVPIVADIARFKNNLLQMDGSLQADNEDIERVIRQIKDL
VVSKIILDESITAYSISRASSILRMSTDNKKELTQQDIEEILSKVEPYIY
GGTPLNEALTKCHRFFSSSQFRGHRKMLFVLSDGAPTDTATQAPIKEMHD
SEITIVSCYITQDNLRNPRRLYATEQPEWKRQDEPFSTSGGLLGLFGNVL
NQLLQSNGASFMFNLSSSVETQSIPRTIFVKKGWTVDVENNHVKLFAQVN
HPDLVNEVTELAKNILFCQDALSDVLTTIDLDLYINQKLKGFQVSRQVGG
VCFAHATATVMHLATHRIVDRYQGRVPADFNVFNRGCAYPDFHKLKEKMI
DQFGRTPEGNLHDDGAYTDEVLKKTCPKLRLQVREVDLQGALAAVTAKRP
VVTDFALNAQQWDQFFRFYRTQPTGILPKELIQNAHQPKAELEGHAVVLI
GFNGKSLQFMNSWGTDWGDSGFFRVSNDGGVLPLPYVRFYDVYWTLNDLY
QCEKEAYRIKGRALAESHINRLKSLQVATHMCRLCHKSSKVIDFKGNMKE
VTCPKCYRKFPMKNAGPDILLAVYLALLQVKESK Run BLAST on NCBI transcript from alignment at scaffold_100:863075..866849+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045711 ID=TCONS_00045711|Name=TCONS_00045711|organism=Clytia hemisphaerica|type=transcript|length=3775bp|location=Sequence derived from alignment at scaffold_100:863075..866849+ (Clytia hemisphaerica)
GTGGAATAGGTATATTTTTAGTGTTTTAGATTGTATGAATTACTCAATGC
TTTGCAATGCTGATGTATTTTGCACATAGAAAAAAATATCAGATCACTGC
AAGAACCACAGTCAAAGTCTTGTATTTTTTTGTGGATGATAATAAAAAAC
TACTTTTGCAAAAGGTATGAGGAAATTTTTCACTTTGAGGTAACAATTCT
TGACTTCTAGGCTAGAGACCAAGTAGTAGTTTTATAGCTAAAATATTTTA
TAGCTATAAGATGAGGAAGGAATATCACATGTTAAATAAGATGGAGATTT
TAAGTCTATTATTTAACTTCTTGACGTCCCGCCGGCGAAATTTTGTGCTC
TCAGGGACGATATTTACGGCTGCCGGTAGTTTTGATTTAAgcattgaaaa
atctttaaaatgtgATATTTTAGCTTTTTGAAAGCGTCAACCTCAAAGAG
TTAACGAGCCAGGAAATGATTTTCAAAGCTAACTTTTGCTTATGGAAAAC
TAGTTTGACCCTTTCGGAttgcatttatcaaaaatactttCAGCTTCATG
TTAACTCCTTGACGTCCCACCAGCAAAATTTTGTGTTCTGAGAAACGATA
TTTTTGGCTGCTGCGGTTGTTTTGATTGATGAACAAATTCAGAAATCTGG
AAGTCTGGACAAATAGAGCtttgaaagagctttccaacggtaccaaACAT
TAAAGGGTTAGCTATCATTAAAGTCGAGATAACTCGATTCAAAGTGTAAG
CCTCGAAAACTCTTTATATTTTAGCTTTTTGAGAGCGTCAAGGAGTTAAA
CTCAAATATACAGTGGCTTCCTCAGTATATGAGGGTAAAAGCTGAGTGAA
AACTTCCCTATTGTGACATTATTCCTTTTTTTTATACAACAAGTATTATT
CAAAAGCATCTATCACCCGGTTTAAGTGTGAAAAATTGCTCAACCaagct
tctgctcatcctctagcgaaagaaaaattcttataaatataggaagtata
tctatagaggtctgcagTTCAGACTAGCGaccacctcactaaaaaccggg
actTTTCATCCCATtgattgcgtagaaaaaacgcgggtgacgtctagtat
aggccaTTTCCAGACCCGTTTATCTTATATATATTTCAGGTAAGATGAGT
TACCAGGACACTATCATTGGTGTTTTGCTCGATGTCTCTGGCTCCATGCG
ATGCAATATCAAAGGAAGACCAGAGGGTGACAAAGGATGGATTGGAGCAG
TTTTCAAATGTCTGGATAATTTATTGGATAATGATATTAAAGGCAATCAC
AAGATATTCGCTTTATGTGTTGGTGGGGCGGAAACAGGTGTTTTTGACCT
TttaaaaacattggaaaatgGTAGACAACAGGGAGAGCAGGGTTTCGAAT
CTATCAATTTGTCTCACGAGGAAGTGATTAGCTGGGCCTGTGTATTGTTG
GAAACAAATGGTGCCACCGAACTGCGCACTTGGGCTCCCATATGGAAACT
GAAACGTGAAGTATCCCGCGAAGATGCAAGAGCCGTGCTTCGACTTTTAA
CAAATCTTTTAGAAAACGGAGATGACAGCACGATGCGCAAAATTGTATTT
GATATCTTACCGAGAGCTTGTCGAGTACACGTACCCATTGTGGCAGATAT
TGCGAGATTCAAAAACAATCTTTTACAAATGGATGGTTCATTACAAGCTG
ATAATGAAGATATTGAGCGTGTCATAAGACAAATCAAAGATTTAGTGGTT
TCAAAAATAATACTCGACGAAAGCATTACCGCTTACAGCATTTCAAGAGC
TTCTTCTATCCTTCGAATGTCTACTGATAATAAAAAGGAGTTAACACAGC
AAGATATTGAGGAAATCTTATCCAAAGTAGAGCCCTATATTTATGGTGGC
ACCCCACTAAACGAAGCCTTAACCAAGTGCCACCGGTTTTTTTCATCGTC
ACAATTTCGCGGTCATCGGAAAATGTTGTTTGTCCTCTCAGATGGAGCCC
CTACCGATACCGCCACTCAAGCTCCGATAAAAGAAATGCACGATTCAGAA
ATCACTATCGTAAGCTGTTATATCACGCAAGATAACTTAAGGAATCCAAG
ACGACTATACGCAACTGAACAGCCAGAATGGAAAAGACAAGATGAGCCTT
TTTCCACATCAGGAGGCCTTTTGGGGCTTTTTGGTAATGTTTTGAATCAA
CTATTACAGAGCAATGGAGCATCGTTCATGTTTAACTTGAGTTCTTCTGT
TGAAACACAATCGATTCCAAGAACTATTTTCGTCAAGAAGGGCTGGACAG
TTGATGTCGAAAATAACCACGTCAAATTGTTTGCCCAGGTTAATCATCCT
GATCTTGTTAACGAAGTCACAGAATTGGCAAAGAATATTTTGTTTTGCCA
AGACGCTTTGTCTGATGTATTGACAACAATCGATCTCGACTTGTATATCA
ACCAAAAATTGAAAGGTTTTCAAGTCTCAAGACAAGTTGGCGGAGTCTGT
TTTGCACATGCGACAGCAACCGTTATGCATTTGGCCACTCACAGAATTGT
TGACAGATATCAGGGTCGTGTGCCTGCAGATTTCAACGTGTTCAATCGTG
GCTGCGCATACCCAGATTTTCACAAGCTCAAAGAGAAAATGATCGATCAA
TTCGGTAGAACACCTGAAGGAAATCTTCATGATGACGGAGCTTACACAGA
TGAAGTATTGAAGAAGACGTGTCCAAAACTCCGTCTCCAAGTGAGAGAAG
TCGACTTACAAGGTGCATTGGCTGCCGTCACAGCAAAACGACCTGTCGTC
ACAGACTTTGCACTAAACGCCCAACAATGGGACCAATTCTTCAGATTCTA
CCGAACCCAACCAACAGGTATTTTACCAAAAGAATTGATTCAAAATGCCC
ACCAACCGAAAGCAGAGCTCGAAGGGCACGCAGTAGTACTGATTGGTTTC
AATGGCAAATCACTTCAATTCATGAATTCATGGGGTACTGATTGGGGTGA
TAGTGGCTTTTTCCGTGTGTCTAATGATGGTGGCGTATTGCCTCTTCCTT
ATGTTAGGTTCTACGATGTGTATTGGACCCTTAATGATTTGTACCAATGC
GAAAAAGAAGCTTATCGAATAAAAGGAAGAGCTTTGGCTGAGTCTCATAT
CAACCGTTTAAAGAGCTTACAAGTTGCAACACATATGTGTCGTCTATGTC
ACAAATCTTCCAAAGTGATTGATTTCAAAGGGAATATGAAGGAGGTGACG
TGTCCAAAGTGCTACCGCAAATTCCCAATGAAAAACGCGGGACCAGATAT
CTTGTTGGCCGTTTATTTGGCTTTGCTACAAGTAAAAGAAAGCAAATGAA
ATggaaaataaaactttatcTTCATATTAACAGAAAAACTAGCAAGGGAT
TTGCTCGCGTATTATAACATTATACAGGACCAGCAACGTTAAatacttaa
aaatattttttatttcaatagtCATTTTCATGATCATTCTTATGTATATT
TAATTTTACACATTATTTCGACCTGTCTTGTTTTATATCCATGGCAATGG
AACTGAGATTCCAGATTTTCCCAACCCTTACACAAGGACTGATGCCAGGT
TTCAAAAAGACTAAGAGTGAAACTATGCCCGTGCCTCTTATATGTCTCGT
TAGAACACATCATCATTTCTAGCTGATTGATTAACAAAGCCCTAATCAGA
ACacatcaaaatttctagctcaAATATACTCTTGAAACATCGGGAAAAAA
GGTCGTCTCACCTGCTGCTTTCGTT Coding sequence (CDS) from alignment at scaffold_100:863075..866849+ >TCONS_00045711 ID=TCONS_00045711|Name=TCONS_00045711|organism=Clytia hemisphaerica|type=CDS|length=2205bp|location=Sequence derived from alignment at scaffold_100:863075..866849+ (Clytia hemisphaerica)
ATGAGTTACCAGGACACTATCATTGGTGTTTTGCTCGATGTCTCTGGCTC
CATGCGATGCAATATCAAAGGAAGACCAGAGGGTGACAAAGGATGGATTG
GAGCAGTTTTCAAATGTCTGGATAATTTATTGGATAATGATATTAAAGGC
AATCACAAGATATTCGCTTTATGTGTTGGTGGGGCGGAAACAGGTGTTTT
TGACCTTttaaaaacattggaaaatgGTAGACAACAGGGAGAGCAGGGTT
TCGAATCTATCAATTTGTCTCACGAGGAAGTGATTAGCTGGGCCTGTGTA
TTGTTGGAAACAAATGGTGCCACCGAACTGCGCACTTGGGCTCCCATATG
GAAACTGAAACGTGAAGTATCCCGCGAAGATGCAAGAGCCGTGCTTCGAC
TTTTAACAAATCTTTTAGAAAACGGAGATGACAGCACGATGCGCAAAATT
GTATTTGATATCTTACCGAGAGCTTGTCGAGTACACGTACCCATTGTGGC
AGATATTGCGAGATTCAAAAACAATCTTTTACAAATGGATGGTTCATTAC
AAGCTGATAATGAAGATATTGAGCGTGTCATAAGACAAATCAAAGATTTA
GTGGTTTCAAAAATAATACTCGACGAAAGCATTACCGCTTACAGCATTTC
AAGAGCTTCTTCTATCCTTCGAATGTCTACTGATAATAAAAAGGAGTTAA
CACAGCAAGATATTGAGGAAATCTTATCCAAAGTAGAGCCCTATATTTAT
GGTGGCACCCCACTAAACGAAGCCTTAACCAAGTGCCACCGGTTTTTTTC
ATCGTCACAATTTCGCGGTCATCGGAAAATGTTGTTTGTCCTCTCAGATG
GAGCCCCTACCGATACCGCCACTCAAGCTCCGATAAAAGAAATGCACGAT
TCAGAAATCACTATCGTAAGCTGTTATATCACGCAAGATAACTTAAGGAA
TCCAAGACGACTATACGCAACTGAACAGCCAGAATGGAAAAGACAAGATG
AGCCTTTTTCCACATCAGGAGGCCTTTTGGGGCTTTTTGGTAATGTTTTG
AATCAACTATTACAGAGCAATGGAGCATCGTTCATGTTTAACTTGAGTTC
TTCTGTTGAAACACAATCGATTCCAAGAACTATTTTCGTCAAGAAGGGCT
GGACAGTTGATGTCGAAAATAACCACGTCAAATTGTTTGCCCAGGTTAAT
CATCCTGATCTTGTTAACGAAGTCACAGAATTGGCAAAGAATATTTTGTT
TTGCCAAGACGCTTTGTCTGATGTATTGACAACAATCGATCTCGACTTGT
ATATCAACCAAAAATTGAAAGGTTTTCAAGTCTCAAGACAAGTTGGCGGA
GTCTGTTTTGCACATGCGACAGCAACCGTTATGCATTTGGCCACTCACAG
AATTGTTGACAGATATCAGGGTCGTGTGCCTGCAGATTTCAACGTGTTCA
ATCGTGGCTGCGCATACCCAGATTTTCACAAGCTCAAAGAGAAAATGATC
GATCAATTCGGTAGAACACCTGAAGGAAATCTTCATGATGACGGAGCTTA
CACAGATGAAGTATTGAAGAAGACGTGTCCAAAACTCCGTCTCCAAGTGA
GAGAAGTCGACTTACAAGGTGCATTGGCTGCCGTCACAGCAAAACGACCT
GTCGTCACAGACTTTGCACTAAACGCCCAACAATGGGACCAATTCTTCAG
ATTCTACCGAACCCAACCAACAGGTATTTTACCAAAAGAATTGATTCAAA
ATGCCCACCAACCGAAAGCAGAGCTCGAAGGGCACGCAGTAGTACTGATT
GGTTTCAATGGCAAATCACTTCAATTCATGAATTCATGGGGTACTGATTG
GGGTGATAGTGGCTTTTTCCGTGTGTCTAATGATGGTGGCGTATTGCCTC
TTCCTTATGTTAGGTTCTACGATGTGTATTGGACCCTTAATGATTTGTAC
CAATGCGAAAAAGAAGCTTATCGAATAAAAGGAAGAGCTTTGGCTGAGTC
TCATATCAACCGTTTAAAGAGCTTACAAGTTGCAACACATATGTGTCGTC
TATGTCACAAATCTTCCAAAGTGATTGATTTCAAAGGGAATATGAAGGAG
GTGACGTGTCCAAAGTGCTACCGCAAATTCCCAATGAAAAACGCGGGACC
AGATATCTTGTTGGCCGTTTATTTGGCTTTGCTACAAGTAAAAGAAAGCA
AATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045711-exon-scaffold_100-1491911889:863075..863238 | TCONS_00045711-exon-scaffold_100-1491911889:863075..863238 | Clytia hemisphaerica | exon |
| TCONS_00045711-exon-scaffold_100-1510915933:863075..863238 | TCONS_00045711-exon-scaffold_100-1510915933:863075..863238 | Clytia hemisphaerica | exon |
| TCONS_00045711-exon-scaffold_100-1575043694:863075..863238 | TCONS_00045711-exon-scaffold_100-1575043694:863075..863238 | Clytia hemisphaerica | exon |
| TCONS_00045711-exon-scaffold_100-1491911889:864214..866849 | TCONS_00045711-exon-scaffold_100-1491911889:864214..866849 | Clytia hemisphaerica | exon |
| TCONS_00045711-exon-scaffold_100-1510915933:864214..866849 | TCONS_00045711-exon-scaffold_100-1510915933:864214..866849 | Clytia hemisphaerica | exon |
| TCONS_00045711-exon-scaffold_100-1575043694:864214..866849 | TCONS_00045711-exon-scaffold_100-1575043694:864214..866849 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_100 | supercontig | scaffold_100:863075..866849 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006508 | proteolysis |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008234 | cysteine-type peptidase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006508 |
proteolysis |
| molecular_function |
GO:0008234 |
cysteine-type peptidase activity |
Blast
The following BLAST results are available for this feature:
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