TCONS_00045708 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045708
Unique NameTCONS_00045708
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length802

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045708 ID=TCONS_00045708|Name=TCONS_00045708|organism=Clytia hemisphaerica|type=transcript|length=802bp
AATAACAGGCATGTCATCAGAATTGCCGACACCACACGATCATTACACAA
TGTTTGATTCCGATGAGGACATTGATCCTTCTCCGGGTAGCATCGCCGAT
CAACCAAGAAGTATACGGTCAAGTACAAGGAAACTGAGGGAGGGATGGCG
GGGCTCTAACGAGAAACCTTCTATTCACCACATACCAATCAGTACGGTTT
ACAAGGACCGTCCAAGCCCAATGGCAAGCCGACATCGAAACTCTACGAAT
TCTATTGCTAGTAACACATACAGTCCACCGAGTAATCCGTACCCAATTGC
ATCCGCATCAGCAGAAGAATTGCTTTATCAAGATCAACCAAAAACATTCC
CTAATCAagTTTCAGCACACAATTTCGAATCGAAAACAATGATGTACAAA
GACAGTACCGAATCTCTAGGAGGCCGAaaaGAGGGAGGGCATCGGCGAAC
GAAATCTGAAGGAGGAGGTCTGGTGACCACTTCACAAAATTTCATATCCA
TTACACCACAGCTGGAAAACACTGAGAAGACATTATTCTGTGAGCCAATC
TCAGAGAAGTTGAtctgtttactttgtaaaagtGTATTTCGTGAGCCTGT
CATCACCAATTGTGGGcatACATTTTGTCGACAATGTGTGTTATCAGCTG
CCAAAGAATCAACTTGTCCAACAGATGGAACTCAACTTTCTGTCGGTCCC
GTAAATATTGCTATCCGTGATCAAGTGGGTGAATTACTGATCCATTGCAA
ATATGGTTGTTCACCAGCATCTTCGGGTGTTCCTGGTGAATATGAAATCG
AC
Run BLAST on NCBI

protein sequence of TCONS_00045708-protein

>TCONS_00045708-protein ID=TCONS_00045708-protein|Name=TCONS_00045708-protein|organism=Clytia hemisphaerica|type=polypeptide|length=267bp
ITGMSSELPTPHDHYTMFDSDEDIDPSPGSIADQPRSIRSSTRKLREGWR
GSNEKPSIHHIPISTVYKDRPSPMASRHRNSTNSIASNTYSPPSNPYPIA
SASAEELLYQDQPKTFPNQVSAHNFESKTMMYKDSTESLGGRKEGGHRRT
KSEGGGLVTTSQNFISITPQLENTEKTLFCEPISEKLICLLCKSVFREPV
ITNCGHTFCRQCVLSAAKESTCPTDGTQLSVGPVNIAIRDQVGELLIHCK
YGCSPASSGVPGEYEID
Run BLAST on NCBI

transcript from alignment at scaffold_100:820439..829059+

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045708 ID=TCONS_00045708|Name=TCONS_00045708|organism=Clytia hemisphaerica|type=transcript|length=8621bp|location=Sequence derived from alignment at scaffold_100:820439..829059+ (Clytia hemisphaerica)
AATAACAGGTAACATATTTGTTTACTTGGAAAGTACGTCCTTTAGACAAC
CTATTGCCGTACTTATGATAGAGTAAAGTCAAGCGTTATAAATTATATAT
TTGGCGCTTTCGTTCGCCGTGTTTTTTTTCCCGCTGAGTTAATTACCCAT
AAATCTCGTGAAAATGCTTTTTGGTGGATTGGTTTGATAAATTAGATCGT
TATATATCTGTACCAGACACAAAACAACGCGCATCACAATATACATAAAT
GTCATATGGATGTCAAAGCGACAGATTTTTCTTAATTGCCCTTACACTTT
GGTCAAAACTGAActacatgttcttataaaatatatgatATGCAGTGCTG
ATGAGTcttaataaggacgaaatgcatatgctgctcttcCACCCAGTCTC
CTAAAAGAAGATAGTTagacagaaattctttgaatttttcatatatGTAT
TGTTTCTTAGGCATGTCATCAGAATTGCCGACACCACACGATCATTACAC
AATGTTTGATTCCGATGAGGACATTGATCCTTCTCCGGGTAGCATCGCCG
ATCAACCAAGAAGTATACGGTCAAGTACAAGGAAACTGAGGGAGGGATGG
CGGGGCTCTAACGAGAAACCTTCTATTCACCACATACCAATCAGTACGGT
TTACAAGgtgattgttttttctttttagcgagattatgtatcggagatat
tctacggctacggttgcggggctgcctgTACGGGTCGTCAACAAAGGCGA
CATgccgttgtctactttgctctgtacgggaaaaacaccaaaacaccatA
TAAggaaagtcgacataatgccgtacgtcaaatatcgaacttgctttcac
ccgccattacttgccttactcgccatttccctcgccactttagccgtagc
cgcagagaattccagatacataatctgtGCGTGTGCAGCCTAGCTAACTA
AGTCTGTATTCACAAGGGTAAGACACACAGCTTGTGATATTGTACCGTTT
TTCAgtactttaaagattttttatatctacggatttttaagtttgccttg
gaatacttaTTCAGTATGATATACTTATAGTTATTCAGTCATAactaacc
atcagatttatcctagtgactgaatcaagCTAGCTTAAATTTCTAGGCTA
TAGCGTGTGTGTGTCGAGAGCACGAGTTAGAAGATAGAGAAAGAAGGCAA
ACGCAAAGATTTCCTTTATCCTAGGATAGGATAAACCTGCTAACTACAGC
CCCAACATGTTCGAatagactttttgataaattattttgagcataacgaa
tgcctcgttttgaaaccatcaCCAAAGTCATTAAATCCTTTGAATCTTTA
AGTGGTACTCTTAAAAGTAGAATAAACTTCTTATGAACTGGgaaattacc
atagcaatattttgaaaacgaggtaagcgttgcccatgacgtaatttatg
aaacggTCTATTGAGTgaggttaaaaaaaaacatgtcggattcatttttc
gatggccgaaatTTGCGAAGCGAGATTTTCTAATTATTAAACCTTTATCC
CATCGTTTATACAGGACCGTCCAAGCCCAATGGCAAGCCGACATCGAAAC
TCTACGAATTCTATTGCTAGTAAGTCAACTAAGAACTTGGAAGCTATTCg
gaagaaaaaagaatcaaagagtTTGTTGTCGAGAGTAAAATCCTTATGAC
TTCAAACGAGTCATATCTAGGGAAATTTCACTTTACTAACAAGTACACCA
GAAACCCCTCTGTAATTTGAATCTCTTCGTAATTCGAATTCTTTAGATTT
TTCCATTCAATGTCGAATTAAAAGCTCATCCGCTGTGATACTGTGTCACT
TTGTCGAAGTTACTTTTATCATGGATACATGGTGTTCTAAATCTAGGCTT
AGAACGTCATGTCATGCCTGGCTACCACTTTTTTGAGATATTCTATCGTT
CTTTTTATATTTGTCGCCTAGGTAACACATACAGTCCACCGAGTAATCCG
TACCCAATTGCATCCGCATCAGCAGAAGAATTGCTTTATCAAGATCAACC
AAAAACATTCCCTAATCAaggttaaaaattaataaaaattggTTAACTGA
TATTAACCACTGGCGTGTATATCTTTCGCTCTGATAACGACTTTCTGTTG
GTCTaaaattttgggtttttttctcgTCTAACCAACGGGAAGCCGTTATG
GGGGCGCCAACAGtcttgattacccatgattcatttcgatcGTGAAATGG
CCTAATTAGACCTTGGGCTAAGTTATATTCGTCATCTTTTATCGGAGATA
TAGAAAATTTGTACCCAGTAGGCGTGGGTACGTCGTATTCATTACCGAAT
TTATGTATGTGTTTTTTACTGGAatggagacggtaaggttctaatttgtc
tacatctggatgacggtaaatcagcacttttaccgtcctcaaaagtgcaa
atacataaacatGGTATTCTCCATCACATTCGGGCAACACCAACATTGAG
TAGTGTCGCCATTAGGGTACCTATTTTCAAAatactccgatcaaagattt
tggtgGGTCGGCTCGGGTTTGAGAAACTACCTCCAGGGTTTATATAAATA
CATTTTCTCCTCTCTCCAATACGCGTAATAAATGGTAGATAAAAATTTAA
ACCACAGAGCCTGGACACTGACACCACCATCTTGCTGCTCTGTGAGTGTC
CATAATAACTGAAATGTCTCTGATTGGAAAGTTAAATGGTAATAAGCATC
AAGGCTTTTGCATACCTTCCTTACATAGTAATAAGACGAGACACTAGACA
TGCCAAGACAAGACATTCCCAACCGggaattcatgatatacaccattgta
atgtcttctgacattacatcacggacacaacagctgattggttgcaagtg
acgtattgactgattttaccaATAAGCTGtcgggtccgtgatgtaatttg
aaaagacattgcaatggtgtgaGTGTGTTATGTGTGTTTATATCCCAGGT
CGGGCTCCTAATTAAGGGGAGTCACTTATTTGAGGGAATTTCGAACGGCG
GTTCGGTTCGGTTCTCTCAGAAACTTCGACGACCGTCTGGTAACCTCGAC
GGCGGCCTGGTTTCAACCCTAAAAGTGTCTCAGGTCGGGTCCTACTCGAG
GGGAGTCACTTCTTTGAGGGAATTTCGAACGGCGGTTCGGTTCTCTCAGA
AACCTTGACGGCGGTCTGGTTTCAACCCTAAAAGTGTCTCAGGTCGGGTC
CTACTCAAGGGGAGTCACTTCTTTGAGGGAATTTCGAACGTCGGTTCGGT
TCTCTCAGAAACCTTGACGGCGGTCTGGTTTCAACCCTAAAAGTGTCTCA
GGTCGGGTCCTACTCAAGGGGAGTCACTTCTTTGAGGGAATTTCGAACGG
CGGTTCGGTTCTCTCAGAAACCTTGACGGCGGTCTGGTTTCAACCCTAAA
AGTGTCTCAGGTCGGGTCCTACTCAAGGGGAGTCACTTCTTTGAGGGAAT
TTCGAACGGCGGTTCGGTTCTCTCAGAAACCTTGACGGCGGTCTGGTTTC
AACCCTAAAGGTGTCTCAGGTCGGGTCCTATTCAAGGGGAGTCACTTCTC
TGAGGGAATTTCGAACGGCGAATCGGTTCTCTCAGAAACCTTGACGGCGG
TCTGGTTTCAACCCTAAAAGTGACTCTGAGATCGATGTGTGAGTGTATTG
TGTGAGGTAGGTTTTATcgtttcctagggatttttctaagcttTATAGTT
AAGTTACATTCATTGTATTACTTTAGACTGGAATTATCTAATTGAAATTT
TAAGGGAATTTAGGGGTACCTGGTTCCCAGATAGCTAGGTGGTAGTTGGG
TTTCAGTCCTCAATATGGTGGGCTAGAAAGCTGGCAAGATTATCATAGTT
TGTATTATATCGCAGGCTGagttctttttataatagaatATGACAGGTAG
TTGCTTGGCTCACGTGGTACAGGGCAAGTTTTTCATCACTACCTCTCACA
ACGCTCAGTGCTTTGGTCGCGTGATGCAGggacaatttatttatttttgt
gtgtattcttctttttctgtaTCTGCTTCATTTTTAATGGTACTAGGTTA
TTGGCAAGTAAGAATATCAATAGAACTACCAGTGGCTAGATCTAATTGTA
TATAGTCGTTTAATTAATTTAGATTTCATCATATTTAGGATTTGTcatat
ttaactttttattttttattgattatttCCTCTCTTTTATTGTTATGTTG
TCTGGTCAGTCTGCAACCATTGTCCCGCCATTGTCTTGTTTTGGGGATAC
CTTCGGTTGGgactaaattttccccaaaactgtTTATGGGTTAGCCAAAC
ATGTGAACGCCAAACTTAATTGAAAAATGTCTCAATCTATTCTACTCCCC
TCCAAACAGATGaacgaatttggaaattaaatgtttatttaACAATAGTT
AAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCCGCCTGCAAGTAGCCTTAC
TTCTCACTTGGTTCCGTGCGATATTGGCTATACTCTCAAAGCACAAACAA
GGTTTAAGATGGCGGTGTTCAAGTCTCATAAattttttacctccctcccG
CCCTACAGATATTGGTTGCCGGCAACCCTATTTCTAGTTTATGTTAGTTT
ATCACTAGCAGGGGgactaaattttccccaaaactgtTTATGGGTTAGCC
AAACATGTGAACGCCAAACTTAATTGAAAAATGTCTCAATCTATTCTACT
CCCCTCCAAACAGATGaacgaatttggaaattaaatgtttatttaACAAT
AGTTAAANTTCTACTCCCCTCCAAACAGATGaacgaatttggaaattaaa
cCTAAGGTTTCCGTCCATATTCACAAAACCTAGTTGCCACACTGTATATA
TGGTCAAACATCCAAGGAAttcgtttttacatttttcccCACAGTTTCAG
CACACAATTTCGAATCGAAAACAATGATGTACAAAGACAGTACCGAATCT
CTAGGAGGCCGAaaagtaagtcatttttctGCTGAAATACAATGGATTTT
TTCGTTGGAGAAAATTCACAATCGACGGTATTGGTCATAATGATGCCTAT
TTGAGCATAGTTCGTATAAGAAACCCCGATCTAGAAgacttttgtttctt
tctattgtttctaaATTTAGCTTGCGTTGAGAAAtgagtttgttttgctc
actttttgaccaTGTGATTAAGTGTTAAACCAATCTCAAGAGGagtattt
ggtaacgtgatcaaaaactgagcaaatcgattttatGAGCGTTGATAACG
aagaaaaagttaacaaaaagttacaacaatAAGCCTCCAGACCATGATTC
AAGGAAAGTGATTTTTCTACGAATATCTGATAATTCATACTTACACCTGC
ACAACTAGTTTTTTTCTCCTAGCTGtattgtttaaaattaagtaagccaa
tagtttgtttttgtttcgattcgTAACTAAAATGGTTAACTaaaatggaa
tttcttaatgaaaattatgtCAATGATATATAGCTCATATAGAAGCTCAA
CACTTAGTGTAttgagcactctggtgacaaTAGCAGTCTAAGCTCGCTTA
CCAGAGCTGCACTgatgagtcctgggaaggacgaaacacgtgtctgcggA
TAAAAATGTCAATAATATGTATCATAAATGGAATATTTCTCTTGTCTGTT
TAGGAGGGAGGGCATCGGCGAACGAAATCTGAAGGAGGAGGTCTGGTGAC
CACTTCACAAAATTTCATATCCATTACACCACAGCTGGAAAACACTGTAA
GAAAAGTTACTTATTCTTTAGCGCCAATAATGATCTTATTAATCTAGCTC
TGTATGAACCCCTGTTTGTTCCAAAAGGTTTTGGAATATTTTGGTGAAGG
TAACGGTTATTTTGGTCTGGTCTGAATCTAGAGTAAGCTAGTTTATAGAC
ATATTTTACTGCCACTGAAAATCTTAATTACCTTGTTTTACTACAGGAGA
AGACATTATTCTGTGAGCCAATCTCAGAGAAGTTGAtctgtttactttgt
aaaagtGTATTTCGTGAGCCTGTCATCACCAATTGTGGGGTATGTAGCAA
ATTTATCAttaagtacactttttttataagaacatgacaATTTTTTGGAG
CCTCgttaagtacacgtttttttataagaacatcaaaaattttgttttgt
gttttagagtccacattAGCCAGTGCCTTCCAACAAacgaaattttttct
ttgttttatggttaaattgcgataaaaaagcggttttcgtgtaACAGGCC
AAGTCCACATATGCTATTCCAGGAAGCAATTTATACTTTCCCCCGTGTTA
AGGAGGGCATATTTTCTTTCCGGGACAGGGGGGTACCTtcttaaaacttg
aaaatttagaGGCTCCGTGGTACTTTGTCAAATAATCGAAGGGGCCTTGA
TGTATAATATACGTAAACTGCCAAATGTCAATTATTTCTTTCGAGGTTAA
TTTCACAGGTTTCATAAGCCAGTAATAACGCTTATCACCTCCAAACCGCA
ATGTCCTCACTTTATTAAAGTCAGAAGTCATGTAACTTGAACGAAACACA
AACCAGAAAAGCCTGCTAATCTGAGGTGACGAAAGTTACTCCTCACTTAT
GAATCTAACCCACTGGCccttatataccctggaccaaggtatatccgcca
tctttgatcagagtttttagaaaagtggtacccttTAGTTGCACTACTCG
ATGAGGGTTGATTTGTGGTTCAATGAAATTTTCCGTTTAAAAATcttacc
attagggtaccactttcaaaaaaactccgatcaaaggtTTTGTCTGGCCA
GGATCGAGAAAATGcttccagggtatataaaggtcatcGATCTAACCCCA
TTTGACGGTAATTATCTGAAAATCTAAGCTATAATGctatatttttgttt
gttttcagcatACATTTTGTCGACAATGTGTGTTATCAGCTGCCAAAGGT
ACTAcatattttctttgtttgaaattCTACACATTCGTTCCAACCCATCT
TTACTTACATTTGTAATAACCTTTCACTTGACCAAGAAATTCCAAATATT
TGAGTAAGAGGAAGATTTGGGTAAATTAACTGTTTAAAGTCCGTTTTCCG
TCTCAAATGGAAagtttgctttgaccactgctttacataagaaattgaga
aaacaCATCCTCCCTTTGACGAGAACCTCTTATCTTATGTTTTCATGTAG
AGTATCTCATTNTACTACATATTTTCtgtgtttgaaattttacacattCG
TTCCAACCCATCTTTACTTACATTTGTAATAACCTTTCACTTGACCAATA
AATTCCAAATATTTAAGTAAGAGGAAGATTTGGGTAAATTAACTGTTTAA
AGtccattttccgtctcaaaTGGAAagtttgctttgaccactgctttaca
taagaaattgagaaaacaCATTCTTCCTTTGACGAGAACCTCTTATGTTT
GCATGTAGAGTTTCTCATTATTCATCTCATTTGTTTGCTTTGCATTGTTC
TTCATCTTTAGAATCAACTTGTCCAACAGATGGAACTCAACTTTCTGTCG
GTCCCGTAAATATTGCTGTAAGTTTAAATTATATTAGTTTTAAGTGGGTG
ATATCTTTTTGCTTCAGTGCTAAAAGCTTTTCCACCTCAGTGAAGTATAC
GAAGAGCCTTTTTCgtctcaaaatttcaagaaaatgtgCGAGTTTGTTGT
GTAAAATCTATGTTCCGTCAAACAAAAgaccttgctttgaccactgttgt
tactttgtaaaaaccatCCTGAAGGGGATTGGTCTAGTTGCTCAGGTGTG
GTTTCCACATGATAGCGGAAAAGAGGACATGCTTAAAGCGAATCGACTTT
GGTTGTAATGTTTTAAGAGGCGATACAAACCTCTCTGCATGTGTTGATAC
TGAGAGAATTTCTAAAATTCAAAGAAGACACAAAAACTGCAAAATCTATC
TCATTAAAGTGACCAAGCTATTATCTGCAGTatacaaaaaaagtttattc
TTCTCAGACGGATCTCCGCCGGGGAGGGGGGGACCAGGGCAAAAAGGGGT
ACaggatgtgccgctggtcagggaaccttttttcacctccatGAGTCCCA
TGTAGgctcgcaaaaacaccaaaatagaaaactcagtccctcgtagggta
cctttttagGGGAATTTGGTGGAAATAAGGAAAAGTGGAAAATTTCgaaa
acattttggaatttgagtcccattcagggtcactttttttgcgaatctta
tttttcaaaatacgaGTTCCACGTATGGTCATTTTTTTCGAACCCCTTCT
TTCTGATTTCATCCTTTCTTTCAATCAGCAGATCCGTGATCAAGTGGGTG
AATTACTGATCCATTGCAAATATGGTTGTTCACCAGCATCTTCGGGTGTT
CCTGGTGAATATGAAATCGAC

Coding sequence (CDS) from alignment at scaffold_100:820439..829059+

>TCONS_00045708 ID=TCONS_00045708|Name=TCONS_00045708|organism=Clytia hemisphaerica|type=CDS|length=8010bp|location=Sequence derived from alignment at scaffold_100:820439..829059+ (Clytia hemisphaerica)
ATAACAGGCATGTCATCAGAATTGCCGACACCACACGATCATTACACAAT
GTTTGATTCCGATGAGGACATTGATCCTTCTCCGGGTAGCATCGCCGATC
AACCAAGAAGTATACGGTCAAGTACAAGGAAACTGAGGGAGGGATGGCGG
GGCTCTAACGAGAAACCTTCTATTCACCACATACCAATCAGTACGGTTTA
CAAGGACCGTCCAAGCCCAATGGCAAGCCGACATCGAAACTCTACGAATT
CTATTGCTAGTAACACATACAGTCCACCGAGTAATCCGTACCCAATTGCA
TCCGCATCAGCAGAAGAATTGCTTTATCAAGATCAACCAAAAACATTCCC
TAATCAagTTTCAGCACACAATTTCGAATCGAAAACAATGATGTACAAAG
ACAGTACCGAATCTCTAGGAGGCCGAaaaGAGGGAGGGCATCGGCGAACG
AAATCTGAAGGAGGAGGTCTGGTGACCACTTCACAAAATTTCATATCCAT
TACACCACAGCTGGAAAACACTGAGAAGACATTATTCTGTGAGCCAATCT
CAGAGAAGTTGAtctgtttactttgtaaaagtGTATTTCGTGAGCCTGTC
ATCACCAATTGTGGGcatACATTTTGTCGACAATGTGTGTTATCAGCTGC
CAAAGAATCAACTTGTCCAACAGATGGAACTCAACTTTCTGTCGGTCCCG
TAAATATTGCTATCCGTGATCAAGTGGGTGAATTACTGATCCATTGCAAA
TATGGTTGTTCACCAGCATCTTCGGGTGTTCCTGGTGAATATGAAATCGA
CATAACAGGCATGTCATCAGAATTGCCGACACCACACGATCATTACACAA
TGTTTGATTCCGATGAGGACATTGATCCTTCTCCGGGTAGCATCGCCGAT
CAACCAAGAAGTATACGGTCAAGTACAAGGAAACTGAGGGAGGGATGGCG
GGGCTCTAACGAGAAACCTTCTATTCACCACATACCAATCAGTACGGTTT
ACAAGGACCGTCCAAGCCCAATGGCAAGCCGACATCGAAACTCTACGAAT
TCTATTGCTAGTAACACATACAGTCCACCGAGTAATCCGTACCCAATTGC
ATCCGCATCAGCAGAAGAATTGCTTTATCAAGATCAACCAAAAACATTCC
CTAATCAagTTTCAGCACACAATTTCGAATCGAAAACAATGATGTACAAA
GACAGTACCGAATCTCTAGGAGGCCGAaaaGAGGGAGGGCATCGGCGAAC
GAAATCTGAAGGAGGAGGTCTGGTGACCACTTCACAAAATTTCATATCCA
TTACACCACAGCTGGAAAACACTGAGAAGACATTATTCTGTGAGCCAATC
TCAGAGAAGTTGAtctgtttactttgtaaaagtGTATTTCGTGAGCCTGT
CATCACCAATTGTGGGcatACATTTTGTCGACAATGTGTGTTATCAGCTG
CCAAAGAATCAACTTGTCCAACAGATGGAACTCAACTTTCTGTCGGTCCC
GTAAATATTGCTATCCGTGATCAAGTGGGTGAATTACTGATCCATTGCAA
ATATGGTTGTTCACCAGCATCTTCGGGTGTTCCTGGTGAATATGAAATCG
ACATAACAGGCATGTCATCAGAATTGCCGACACCACACGATCATTACACA
ATGTTTGATTCCGATGAGGACATTGATCCTTCTCCGGGTAGCATCGCCGA
TCAACCAAGAAGTATACGGTCAAGTACAAGGAAACTGAGGGAGGGATGGC
GGGGCTCTAACGAGAAACCTTCTATTCACCACATACCAATCAGTACGGTT
TACAAGGACCGTCCAAGCCCAATGGCAAGCCGACATCGAAACTCTACGAA
TTCTATTGCTAGTAACACATACAGTCCACCGAGTAATCCGTACCCAATTG
CATCCGCATCAGCAGAAGAATTGCTTTATCAAGATCAACCAAAAACATTC
CCTAATCAagTTTCAGCACACAATTTCGAATCGAAAACAATGATGTACAA
AGACAGTACCGAATCTCTAGGAGGCCGAaaaGAGGGAGGGCATCGGCGAA
CGAAATCTGAAGGAGGAGGTCTGGTGACCACTTCACAAAATTTCATATCC
ATTACACCACAGCTGGAAAACACTGAGAAGACATTATTCTGTGAGCCAAT
CTCAGAGAAGTTGAtctgtttactttgtaaaagtGTATTTCGTGAGCCTG
TCATCACCAATTGTGGGcatACATTTTGTCGACAATGTGTGTTATCAGCT
GCCAAAGAATCAACTTGTCCAACAGATGGAACTCAACTTTCTGTCGGTCC
CGTAAATATTGCTATCCGTGATCAAGTGGGTGAATTACTGATCCATTGCA
AATATGGTTGTTCACCAGCATCTTCGGGTGTTCCTGGTGAATATGAAATC
GACATAACAGGCATGTCATCAGAATTGCCGACACCACACGATCATTACAC
AATGTTTGATTCCGATGAGGACATTGATCCTTCTCCGGGTAGCATCGCCG
ATCAACCAAGAAGTATACGGTCAAGTACAAGGAAACTGAGGGAGGGATGG
CGGGGCTCTAACGAGAAACCTTCTATTCACCACATACCAATCAGTACGGT
TTACAAGGACCGTCCAAGCCCAATGGCAAGCCGACATCGAAACTCTACGA
ATTCTATTGCTAGTAACACATACAGTCCACCGAGTAATCCGTACCCAATT
GCATCCGCATCAGCAGAAGAATTGCTTTATCAAGATCAACCAAAAACATT
CCCTAATCAagTTTCAGCACACAATTTCGAATCGAAAACAATGATGTACA
AAGACAGTACCGAATCTCTAGGAGGCCGAaaaGAGGGAGGGCATCGGCGA
ACGAAATCTGAAGGAGGAGGTCTGGTGACCACTTCACAAAATTTCATATC
CATTACACCACAGCTGGAAAACACTGAGAAGACATTATTCTGTGAGCCAA
TCTCAGAGAAGTTGAtctgtttactttgtaaaagtGTATTTCGTGAGCCT
GTCATCACCAATTGTGGGcatACATTTTGTCGACAATGTGTGTTATCAGC
TGCCAAAGAATCAACTTGTCCAACAGATGGAACTCAACTTTCTGTCGGTC
CCGTAAATATTGCTATCCGTGATCAAGTGGGTGAATTACTGATCCATTGC
AAATATGGTTGTTCACCAGCATCTTCGGGTGTTCCTGGTGAATATGAAAT
CGACATAACAGGCATGTCATCAGAATTGCCGACACCACACGATCATTACA
CAATGTTTGATTCCGATGAGGACATTGATCCTTCTCCGGGTAGCATCGCC
GATCAACCAAGAAGTATACGGTCAAGTACAAGGAAACTGAGGGAGGGATG
GCGGGGCTCTAACGAGAAACCTTCTATTCACCACATACCAATCAGTACGG
TTTACAAGGACCGTCCAAGCCCAATGGCAAGCCGACATCGAAACTCTACG
AATTCTATTGCTAGTAACACATACAGTCCACCGAGTAATCCGTACCCAAT
TGCATCCGCATCAGCAGAAGAATTGCTTTATCAAGATCAACCAAAAACAT
TCCCTAATCAagTTTCAGCACACAATTTCGAATCGAAAACAATGATGTAC
AAAGACAGTACCGAATCTCTAGGAGGCCGAaaaGAGGGAGGGCATCGGCG
AACGAAATCTGAAGGAGGAGGTCTGGTGACCACTTCACAAAATTTCATAT
CCATTACACCACAGCTGGAAAACACTGAGAAGACATTATTCTGTGAGCCA
ATCTCAGAGAAGTTGAtctgtttactttgtaaaagtGTATTTCGTGAGCC
TGTCATCACCAATTGTGGGcatACATTTTGTCGACAATGTGTGTTATCAG
CTGCCAAAGAATCAACTTGTCCAACAGATGGAACTCAACTTTCTGTCGGT
CCCGTAAATATTGCTATCCGTGATCAAGTGGGTGAATTACTGATCCATTG
CAAATATGGTTGTTCACCAGCATCTTCGGGTGTTCCTGGTGAATATGAAA
TCGACATAACAGGCATGTCATCAGAATTGCCGACACCACACGATCATTAC
ACAATGTTTGATTCCGATGAGGACATTGATCCTTCTCCGGGTAGCATCGC
CGATCAACCAAGAAGTATACGGTCAAGTACAAGGAAACTGAGGGAGGGAT
GGCGGGGCTCTAACGAGAAACCTTCTATTCACCACATACCAATCAGTACG
GTTTACAAGGACCGTCCAAGCCCAATGGCAAGCCGACATCGAAACTCTAC
GAATTCTATTGCTAGTAACACATACAGTCCACCGAGTAATCCGTACCCAA
TTGCATCCGCATCAGCAGAAGAATTGCTTTATCAAGATCAACCAAAAACA
TTCCCTAATCAagTTTCAGCACACAATTTCGAATCGAAAACAATGATGTA
CAAAGACAGTACCGAATCTCTAGGAGGCCGAaaaGAGGGAGGGCATCGGC
GAACGAAATCTGAAGGAGGAGGTCTGGTGACCACTTCACAAAATTTCATA
TCCATTACACCACAGCTGGAAAACACTGAGAAGACATTATTCTGTGAGCC
AATCTCAGAGAAGTTGAtctgtttactttgtaaaagtGTATTTCGTGAGC
CTGTCATCACCAATTGTGGGcatACATTTTGTCGACAATGTGTGTTATCA
GCTGCCAAAGAATCAACTTGTCCAACAGATGGAACTCAACTTTCTGTCGG
TCCCGTAAATATTGCTATCCGTGATCAAGTGGGTGAATTACTGATCCATT
GCAAATATGGTTGTTCACCAGCATCTTCGGGTGTTCCTGGTGAATATGAA
ATCGACATAACAGGCATGTCATCAGAATTGCCGACACCACACGATCATTA
CACAATGTTTGATTCCGATGAGGACATTGATCCTTCTCCGGGTAGCATCG
CCGATCAACCAAGAAGTATACGGTCAAGTACAAGGAAACTGAGGGAGGGA
TGGCGGGGCTCTAACGAGAAACCTTCTATTCACCACATACCAATCAGTAC
GGTTTACAAGGACCGTCCAAGCCCAATGGCAAGCCGACATCGAAACTCTA
CGAATTCTATTGCTAGTAACACATACAGTCCACCGAGTAATCCGTACCCA
ATTGCATCCGCATCAGCAGAAGAATTGCTTTATCAAGATCAACCAAAAAC
ATTCCCTAATCAagTTTCAGCACACAATTTCGAATCGAAAACAATGATGT
ACAAAGACAGTACCGAATCTCTAGGAGGCCGAaaaGAGGGAGGGCATCGG
CGAACGAAATCTGAAGGAGGAGGTCTGGTGACCACTTCACAAAATTTCAT
ATCCATTACACCACAGCTGGAAAACACTGAGAAGACATTATTCTGTGAGC
CAATCTCAGAGAAGTTGAtctgtttactttgtaaaagtGTATTTCGTGAG
CCTGTCATCACCAATTGTGGGcatACATTTTGTCGACAATGTGTGTTATC
AGCTGCCAAAGAATCAACTTGTCCAACAGATGGAACTCAACTTTCTGTCG
GTCCCGTAAATATTGCTATCCGTGATCAAGTGGGTGAATTACTGATCCAT
TGCAAATATGGTTGTTCACCAGCATCTTCGGGTGTTCCTGGTGAATATGA
AATCGACATAACAGGCATGTCATCAGAATTGCCGACACCACACGATCATT
ACACAATGTTTGATTCCGATGAGGACATTGATCCTTCTCCGGGTAGCATC
GCCGATCAACCAAGAAGTATACGGTCAAGTACAAGGAAACTGAGGGAGGG
ATGGCGGGGCTCTAACGAGAAACCTTCTATTCACCACATACCAATCAGTA
CGGTTTACAAGGACCGTCCAAGCCCAATGGCAAGCCGACATCGAAACTCT
ACGAATTCTATTGCTAGTAACACATACAGTCCACCGAGTAATCCGTACCC
AATTGCATCCGCATCAGCAGAAGAATTGCTTTATCAAGATCAACCAAAAA
CATTCCCTAATCAagTTTCAGCACACAATTTCGAATCGAAAACAATGATG
TACAAAGACAGTACCGAATCTCTAGGAGGCCGAaaaGAGGGAGGGCATCG
GCGAACGAAATCTGAAGGAGGAGGTCTGGTGACCACTTCACAAAATTTCA
TATCCATTACACCACAGCTGGAAAACACTGAGAAGACATTATTCTGTGAG
CCAATCTCAGAGAAGTTGAtctgtttactttgtaaaagtGTATTTCGTGA
GCCTGTCATCACCAATTGTGGGcatACATTTTGTCGACAATGTGTGTTAT
CAGCTGCCAAAGAATCAACTTGTCCAACAGATGGAACTCAACTTTCTGTC
GGTCCCGTAAATATTGCTATCCGTGATCAAGTGGGTGAATTACTGATCCA
TTGCAAATATGGTTGTTCACCAGCATCTTCGGGTGTTCCTGGTGAATATG
AAATCGACATAACAGGCATGTCATCAGAATTGCCGACACCACACGATCAT
TACACAATGTTTGATTCCGATGAGGACATTGATCCTTCTCCGGGTAGCAT
CGCCGATCAACCAAGAAGTATACGGTCAAGTACAAGGAAACTGAGGGAGG
GATGGCGGGGCTCTAACGAGAAACCTTCTATTCACCACATACCAATCAGT
ACGGTTTACAAGGACCGTCCAAGCCCAATGGCAAGCCGACATCGAAACTC
TACGAATTCTATTGCTAGTAACACATACAGTCCACCGAGTAATCCGTACC
CAATTGCATCCGCATCAGCAGAAGAATTGCTTTATCAAGATCAACCAAAA
ACATTCCCTAATCAagTTTCAGCACACAATTTCGAATCGAAAACAATGAT
GTACAAAGACAGTACCGAATCTCTAGGAGGCCGAaaaGAGGGAGGGCATC
GGCGAACGAAATCTGAAGGAGGAGGTCTGGTGACCACTTCACAAAATTTC
ATATCCATTACACCACAGCTGGAAAACACTGAGAAGACATTATTCTGTGA
GCCAATCTCAGAGAAGTTGAtctgtttactttgtaaaagtGTATTTCGTG
AGCCTGTCATCACCAATTGTGGGcatACATTTTGTCGACAATGTGTGTTA
TCAGCTGCCAAAGAATCAACTTGTCCAACAGATGGAACTCAACTTTCTGT
CGGTCCCGTAAATATTGCTATCCGTGATCAAGTGGGTGAATTACTGATCC
ATTGCAAATATGGTTGTTCACCAGCATCTTCGGGTGTTCCTGGTGAATAT
GAAATCGACATAACAGGCATGTCATCAGAATTGCCGACACCACACGATCA
TTACACAATGTTTGATTCCGATGAGGACATTGATCCTTCTCCGGGTAGCA
TCGCCGATCAACCAAGAAGTATACGGTCAAGTACAAGGAAACTGAGGGAG
GGATGGCGGGGCTCTAACGAGAAACCTTCTATTCACCACATACCAATCAG
TACGGTTTACAAGGACCGTCCAAGCCCAATGGCAAGCCGACATCGAAACT
CTACGAATTCTATTGCTAGTAACACATACAGTCCACCGAGTAATCCGTAC
CCAATTGCATCCGCATCAGCAGAAGAATTGCTTTATCAAGATCAACCAAA
AACATTCCCTAATCAagTTTCAGCACACAATTTCGAATCGAAAACAATGA
TGTACAAAGACAGTACCGAATCTCTAGGAGGCCGAaaaGAGGGAGGGCAT
CGGCGAACGAAATCTGAAGGAGGAGGTCTGGTGACCACTTCACAAAATTT
CATATCCATTACACCACAGCTGGAAAACACTGAGAAGACATTATTCTGTG
AGCCAATCTCAGAGAAGTTGAtctgtttactttgtaaaagtGTATTTCGT
GAGCCTGTCATCACCAATTGTGGGcatACATTTTGTCGACAATGTGTGTT
ATCAGCTGCCAAAGAATCAACTTGTCCAACAGATGGAACTCAACTTTCTG
TCGGTCCCGTAAATATTGCTATCCGTGATCAAGTGGGTGAATTACTGATC
CATTGCAAATATGGTTGTTCACCAGCATCTTCGGGTGTTCCTGGTGAATA
TGAAATCGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029212XLOC_029212Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045708-proteinTCONS_00045708-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045708-exon-scaffold_100-1491911889:820439..820446TCONS_00045708-exon-scaffold_100-1491911889:820439..820446Clytia hemisphaericaexon
TCONS_00045708-exon-scaffold_100-1510915933:820439..820446TCONS_00045708-exon-scaffold_100-1510915933:820439..820446Clytia hemisphaericaexon
TCONS_00045708-exon-scaffold_100-1575043694:820439..820446TCONS_00045708-exon-scaffold_100-1575043694:820439..820446Clytia hemisphaericaexon
TCONS_00045708-exon-scaffold_100-1491911889:820899..821095TCONS_00045708-exon-scaffold_100-1491911889:820899..821095Clytia hemisphaericaexon
TCONS_00045708-exon-scaffold_100-1510915933:820899..821095TCONS_00045708-exon-scaffold_100-1510915933:820899..821095Clytia hemisphaericaexon
TCONS_00045708-exon-scaffold_100-1575043694:820899..821095TCONS_00045708-exon-scaffold_100-1575043694:820899..821095Clytia hemisphaericaexon
TCONS_00045708-exon-scaffold_100-1491911889:822003..822057TCONS_00045708-exon-scaffold_100-1491911889:822003..822057Clytia hemisphaericaexon
TCONS_00045708-exon-scaffold_100-1510915933:822003..822057TCONS_00045708-exon-scaffold_100-1510915933:822003..822057Clytia hemisphaericaexon
TCONS_00045708-exon-scaffold_100-1575043694:822003..822057TCONS_00045708-exon-scaffold_100-1575043694:822003..822057Clytia hemisphaericaexon
TCONS_00045708-exon-scaffold_100-1491911889:822410..822508TCONS_00045708-exon-scaffold_100-1491911889:822410..822508Clytia hemisphaericaexon
TCONS_00045708-exon-scaffold_100-1510915933:822410..822508TCONS_00045708-exon-scaffold_100-1510915933:822410..822508Clytia hemisphaericaexon
TCONS_00045708-exon-scaffold_100-1575043694:822410..822508TCONS_00045708-exon-scaffold_100-1575043694:822410..822508Clytia hemisphaericaexon
TCONS_00045708-exon-scaffold_100-1491911889:825533..825603TCONS_00045708-exon-scaffold_100-1491911889:825533..825603Clytia hemisphaericaexon
TCONS_00045708-exon-scaffold_100-1510915933:825533..825603TCONS_00045708-exon-scaffold_100-1510915933:825533..825603Clytia hemisphaericaexon
TCONS_00045708-exon-scaffold_100-1575043694:825533..825603TCONS_00045708-exon-scaffold_100-1575043694:825533..825603Clytia hemisphaericaexon
TCONS_00045708-exon-scaffold_100-1491911889:826292..826384TCONS_00045708-exon-scaffold_100-1491911889:826292..826384Clytia hemisphaericaexon
TCONS_00045708-exon-scaffold_100-1510915933:826292..826384TCONS_00045708-exon-scaffold_100-1510915933:826292..826384Clytia hemisphaericaexon
TCONS_00045708-exon-scaffold_100-1575043694:826292..826384TCONS_00045708-exon-scaffold_100-1575043694:826292..826384Clytia hemisphaericaexon
TCONS_00045708-exon-scaffold_100-1491911889:826585..826677TCONS_00045708-exon-scaffold_100-1491911889:826585..826677Clytia hemisphaericaexon
TCONS_00045708-exon-scaffold_100-1510915933:826585..826677TCONS_00045708-exon-scaffold_100-1510915933:826585..826677Clytia hemisphaericaexon
TCONS_00045708-exon-scaffold_100-1575043694:826585..826677TCONS_00045708-exon-scaffold_100-1575043694:826585..826677Clytia hemisphaericaexon
TCONS_00045708-exon-scaffold_100-1491911889:827547..827586TCONS_00045708-exon-scaffold_100-1491911889:827547..827586Clytia hemisphaericaexon
TCONS_00045708-exon-scaffold_100-1510915933:827547..827586TCONS_00045708-exon-scaffold_100-1510915933:827547..827586Clytia hemisphaericaexon
TCONS_00045708-exon-scaffold_100-1575043694:827547..827586TCONS_00045708-exon-scaffold_100-1575043694:827547..827586Clytia hemisphaericaexon
TCONS_00045708-exon-scaffold_100-1491911889:828150..828205TCONS_00045708-exon-scaffold_100-1491911889:828150..828205Clytia hemisphaericaexon
TCONS_00045708-exon-scaffold_100-1510915933:828150..828205TCONS_00045708-exon-scaffold_100-1510915933:828150..828205Clytia hemisphaericaexon
TCONS_00045708-exon-scaffold_100-1575043694:828150..828205TCONS_00045708-exon-scaffold_100-1575043694:828150..828205Clytia hemisphaericaexon
TCONS_00045708-exon-scaffold_100-1491911889:828970..829059TCONS_00045708-exon-scaffold_100-1491911889:828970..829059Clytia hemisphaericaexon
TCONS_00045708-exon-scaffold_100-1510915933:828970..829059TCONS_00045708-exon-scaffold_100-1510915933:828970..829059Clytia hemisphaericaexon
TCONS_00045708-exon-scaffold_100-1575043694:828970..829059TCONS_00045708-exon-scaffold_100-1575043694:828970..829059Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_100supercontigscaffold_100:820439..829059 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.14517	5.89247	3.86117	3.77755	22.8327	19.0628	19.7679	20.7387	12.856	15.7993	12.7288	13.3879	18.3031	20.5369	18.0731	20.5983	18.1895	17.6769	22.1321	26.5537	8.79239	9.90333	13.788	15.0923	10.8556	10.8349	7.46523	6.30363	11.1559	13.2604
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR017907Znf_RING_CS
Blast
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BLAST of TCONS_00045708 vs. Swiss-Prot (Human)
Match: TRAF7 (E3 ubiquitin-protein ligase TRAF7 OS=Homo sapiens GN=TRAF7 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.430e-24
Identity = 48/90 (53.33%), Postives = 62/90 (68.89%), Query Frame = 2 
Query:  533 LFCEPISEKLICLLCKSVFREPVITNCGHTFCRQCVLSAAKESTCPTDGTQLSVGPVNIAIRDQVGELLIHCKYGCSPASSGVPGEYEID 802
            +F E  S KL C LC SVF++PVIT CGHTFCR+C L + K   CP D  +L+V   NIA+ +Q+GEL IHC++GC  A SG P  +E+D
Sbjct:  120 VFAEQPSVKLCCQLCCSVFKDPVITTCGHTFCRRCALKSEK---CPVDNVKLTVVVNNIAVAEQIGELFIHCRHGCRVAGSGKPPIFEVD 206
The following BLAST results are available for this feature:
BLAST of TCONS_00045708 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRAF71.430e-2453.33E3 ubiquitin-protein ligase TRAF7 OS=Homo sapiens ... [more]
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