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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045696 ID=TCONS_00045696|Name=TCONS_00045696|organism=Clytia hemisphaerica|type=transcript|length=1290bp
taaaattatgaagATAGAGAAACTGACCCTTGTGACTAGTCttcgaatat
tttttgaaacaaaatttaatttgtataaacattttgactttttaaggAAG
TGGACTAAGTACaagaaaaaggaacaaaaaaagTCCTACAATATTCAATA
TTGGATTAACAAAAGATTAATGGattgattataaaaaaatttggacaata
aaacttttttttcatataaacaATATTGTATCAAACGATAATAAGATGAC
CCTAGCTTGCACACAACATTTTTtgaacgttcatctaacgtaaTATGGAT
GTCATGGACtttagatgaatgttgaaacaacgttgtgtgtagACTTGGGA
ATGTAATATACAACACTAAATAATATAGTTCAAAGTGACCGTACACAGTA
TTTAGTACAAGCAGTATGGGTGGGACAAAGAAACTACCTTGGTGGAGACA
AAAGTTCGAGGCTGCTTTTAGgTTCCAACATATTTAATCTAACCTTAACG
AACCGATGTAATTTTTATGTCATAGGTAAGTGACCCAAAAAGTAACATTC
TTTAAATTCAACAAATCGTATCTAAAACCGTGGTAAAGCTCGAGTCCTTT
TATCCGGAAATTGTCAGTAACATGGTACTCTTTGAGTAGAATATTCAGTT
TTAGATAGCATATTTCAAATAGCCTGAGAAACTTACAAATAATAAAAACG
TTTCACATcatctttttaaccaatcaaatgtgTACAATCACTTCGAAACA
AACTATGGAACACACTAAATGAATATTTATACCAACAAAATTTAAACCAA
CCCAATTTAAGGTAAACTTCTCAATCGTTTCAATGTCAAATACTATTATC
GTGATAAGGAGATATGAAACGTTTAAACTTAATTCGAGATTTCCAAGCTA
AAGGGCATCAGATTTTGTCACAAAGTCGTTTTTCCAGGAGGGAGGgaggg
ggtagcaaaaaatcatctaAATCTACACAAATTCCTTCTCCGGGGGGTAT
AAATACCGTTGTCTGGGGGTTAATCACCAATAAATATTTCCtcatttaat
tgtttttaaggAAGAGTCTATTTAGTGGTGCTTTGGGTGTAAGGTTACAG
GCAACCAGTGAATATCCAAATTCACTGCATGGAATTTTTTGAGTGAAATG
ATAATTAGTATTTTACGATTCATTCGACATTGGAAGTAACCATataattt
tggttttaaaagttgtcattaaaaaaaacttaggtTTTACGTTTAGAAGG
TtagtataaaaataatttaaacaaaaatactATTTATATT Run BLAST on NCBI transcript from alignment at scaffold_100:706912..708355+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045696 ID=TCONS_00045696|Name=TCONS_00045696|organism=Clytia hemisphaerica|type=transcript|length=1444bp|location=Sequence derived from alignment at scaffold_100:706912..708355+ (Clytia hemisphaerica)
taaaattatgaagATAGAGAAACTGACCCTTGTGACTAGTCttcgaatat
tttttgaaacaaaatttaatttgtataaacattttgactttttaaggAAG
TGGACTAAGTACaagaaaaaggaacaaaaaaagTCCTACAATATTCAATA
TTGGATTAACAAAAGATTAATGGattgattataaaaaaatttggacaata
aaacttttttttcatataaacaATATTGTATCAAACGATAATAAGATGAC
CCTAGCTTGCACACAACATTTTTtgaacgttcatctaacgtaaTATGGAT
GTCATGGACtttagatgaatgttgaaacaacgttgtgtgtagACTTGGGA
ATGTAATATACAACACTAAATAATATAGTTCAAAGTGACCGTACACAGTA
TTTAGTACAAGCAGTATGGGTGGGACAAAGAAACTACCTTGGTGGAGACA
AAAGTTCGAGGCTGCTTTTAGGTTCCAactagtctagcatgctagacgac
ttaactcagtaagaaataggaagtagaaaacttgacaggagcatcaatat
attttaaccatatcccgacataaaaatttcccgctttcatcaaaaacgtt
ataaacgactggattcccagtctaggTTCCAACATATTTAATCTAACCTT
AACGAACCGATGTAATTTTTATGTCATAGGTAAGTGACCCAAAAAGTAAC
ATTCTTTAAATTCAACAAATCGTATCTAAAACCGTGGTAAAGCTCGAGTC
CTTTTATCCGGAAATTGTCAGTAACATGGTACTCTTTGAGTAGAATATTC
AGTTTTAGATAGCATATTTCAAATAGCCTGAGAAACTTACAAATAATAAA
AACGTTTCACATcatctttttaaccaatcaaatgtgTACAATCACTTCGA
AACAAACTATGGAACACACTAAATGAATATTTATACCAACAAAATTTAAA
CCAACCCAATTTAAGGTAAACTTCTCAATCGTTTCAATGTCAAATACTAT
TATCGTGATAAGGAGATATGAAACGTTTAAACTTAATTCGAGATTTCCAA
GCTAAAGGGCATCAGATTTTGTCACAAAGTCGTTTTTCCAGGAGGGAGGg
agggggtagcaaaaaatcatctaAATCTACACAAATTCCTTCTCCGGGGG
GTATAAATACCGTTGTCTGGGGGTTAATCACCAATAAATATTTCCtcatt
taattgtttttaaggAAGAGTCTATTTAGTGGTGCTTTGGGTGTAAGGTT
ACAGGCAACCAGTGAATATCCAAATTCACTGCATGGAATTTTTTGAGTGA
AATGATAATTAGTATTTTACGATTCATTCGACATTGGAAGTAACCATata
attttggttttaaaagttgtcattaaaaaaaacttaggtTTTACGTTTAG
AAGGTtagtataaaaataatttaaacaaaaatactATTTATATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045696-exon-scaffold_100-1491911889:706912..707382 | TCONS_00045696-exon-scaffold_100-1491911889:706912..707382 | Clytia hemisphaerica | exon |
| TCONS_00045696-exon-scaffold_100-1510915933:706912..707382 | TCONS_00045696-exon-scaffold_100-1510915933:706912..707382 | Clytia hemisphaerica | exon |
| TCONS_00045696-exon-scaffold_100-1575043694:706912..707382 | TCONS_00045696-exon-scaffold_100-1575043694:706912..707382 | Clytia hemisphaerica | exon |
| TCONS_00045696-exon-scaffold_100-1491911889:707537..708355 | TCONS_00045696-exon-scaffold_100-1491911889:707537..708355 | Clytia hemisphaerica | exon |
| TCONS_00045696-exon-scaffold_100-1510915933:707537..708355 | TCONS_00045696-exon-scaffold_100-1510915933:707537..708355 | Clytia hemisphaerica | exon |
| TCONS_00045696-exon-scaffold_100-1575043694:707537..708355 | TCONS_00045696-exon-scaffold_100-1575043694:707537..708355 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_100 | supercontig | scaffold_100:706912..708355 + |
Blast
The following BLAST results are available for this feature:
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