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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045676 ID=TCONS_00045676|Name=TCONS_00045676|organism=Clytia hemisphaerica|type=transcript|length=1620bp
TcggattttgaatttgaaaggaGTTTTAAAAATGCACTTGTAAAAAAGGA
ACTTAATATTGCAATATTGTATTcgacaaaatttcattttatttgttaat
TTCTAGACATATGAAGCAGCATCAAGTCCTTTTTCGATTTCCTGACAATA
TGCATTAGAAGATATGACACAAGAGTACTAAGGGATGCATGCTAGTATTC
GGAAGTGCTTTGATTTATGGATAAAAACATTTAATTGTATTGTAATTGTA
TGTAATTGTATTCATTTCTTTACTATATATTCTTTATTAtcatttatcat
tatttttatatACTTTCTATTATACTGAGTAATTACAGCCTTAGCATTGA
GTATAAAGTCCAGAagaggctagagaggaatcatcaacctttccaaagca
aaataaaatgaagcTTTGGTTACTAAAATTTGTGCTGCATTAATTTAGAA
TGATGGattaaatttgttttataagcatagcatatttttcgaaatctggc
gatCTTACTTTTAATCTGGTGTTTATCTGAAAACTACGCAGGTCACGTAT
TTTGAATAGGAAACAAgtgtttttatttcatttttgcttcatttttcaaa
gacaaaaaCTAATCCAGAATATTGtgattttgaatatctttctaACAGTG
CCAAATTTGTTACGATTGAAAAGTTCCTTGAAAAGTTATCTAGACAACAG
AATAAAGATACACACTTAttgtgaacagactttagtttcATTTCTTTACA
TACATTGGCATTTGACATCTGTCATTTGTTCACAAAGGAttcatttttca
agaaagcGTTTTTTCAGTGTGATTCCCTAAATGTTTAAGAAAATGCAAAA
CACAGAATCTCTCTCCGATGATTTCGACTCATACTTTTTTATGAACGCTC
TGTATAAAATTATTAGTAAATTCTTTATCcttttttttattcttaatatt
tcttTGAGTTATACTGTGTTAACAACTGCCCAACCAGTGGAGCTAATCTT
TAAATTAGTagattttttcaacattctttattacttttttatcCTGGTTC
TGGTGTGGAATTCACACACGCGGGTCACTTCTTTCAAACGGGAAATAAGG
GGCTTCGTTACCCCTCCAAGAGTTTTAACTCTAGCANatttaaaaaaatg
caaaacacaGAATCTCTCTCCGATGATTTCGACTCATACTTTTTTATGAA
CGCTCTGTATAAAATTATTAGTAAATTCTTTAtcctttttttaattctta
atATTTCTTTGAGTTATACGATAAATAGTTAACTACTGCCCAACCAGTGG
AGCTAATCTTTAAATTAGtatattttttcaacattcttatTACTTTTTTA
TCCTGGTTCTAGTGTGGAATTCACACACGCGGGTCACTCCTTTCAAACGG
GAAATAAGGGGCTTCGTTACCCCTCCAAGAGTTTTAACTCTAGCACTTTC
GGAGTTTTAAACCCAGTGACCGATAGTTAAATTGGTATTTTTGCATACCG
CCCTCCCGCCCGATTAAAGTTTTATGATGAATGAGTGCGATATCTCCAGA
TATCCTTTGAAGCTGTCTTGAAAAGAATTCCATCTGGAACCATAGGTAAA
TCTTCATagaattaaaattt Run BLAST on NCBI transcript from alignment at scaffold_100:409531..411150+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045676 ID=TCONS_00045676|Name=TCONS_00045676|organism=Clytia hemisphaerica|type=transcript|length=1620bp|location=Sequence derived from alignment at scaffold_100:409531..411150+ (Clytia hemisphaerica)
TcggattttgaatttgaaaggaGTTTTAAAAATGCACTTGTAAAAAAGGA
ACTTAATATTGCAATATTGTATTcgacaaaatttcattttatttgttaat
TTCTAGACATATGAAGCAGCATCAAGTCCTTTTTCGATTTCCTGACAATA
TGCATTAGAAGATATGACACAAGAGTACTAAGGGATGCATGCTAGTATTC
GGAAGTGCTTTGATTTATGGATAAAAACATTTAATTGTATTGTAATTGTA
TGTAATTGTATTCATTTCTTTACTATATATTCTTTATTAtcatttatcat
tatttttatatACTTTCTATTATACTGAGTAATTACAGCCTTAGCATTGA
GTATAAAGTCCAGAagaggctagagaggaatcatcaacctttccaaagca
aaataaaatgaagcTTTGGTTACTAAAATTTGTGCTGCATTAATTTAGAA
TGATGGattaaatttgttttataagcatagcatatttttcgaaatctggc
gatCTTACTTTTAATCTGGTGTTTATCTGAAAACTACGCAGGTCACGTAT
TTTGAATAGGAAACAAgtgtttttatttcatttttgcttcatttttcaaa
gacaaaaaCTAATCCAGAATATTGtgattttgaatatctttctaACAGTG
CCAAATTTGTTACGATTGAAAAGTTCCTTGAAAAGTTATCTAGACAACAG
AATAAAGATACACACTTAttgtgaacagactttagtttcATTTCTTTACA
TACATTGGCATTTGACATCTGTCATTTGTTCACAAAGGAttcatttttca
agaaagcGTTTTTTCAGTGTGATTCCCTAAATGTTTAAGAAAATGCAAAA
CACAGAATCTCTCTCCGATGATTTCGACTCATACTTTTTTATGAACGCTC
TGTATAAAATTATTAGTAAATTCTTTATCcttttttttattcttaatatt
tcttTGAGTTATACTGTGTTAACAACTGCCCAACCAGTGGAGCTAATCTT
TAAATTAGTagattttttcaacattctttattacttttttatcCTGGTTC
TGGTGTGGAATTCACACACGCGGGTCACTTCTTTCAAACGGGAAATAAGG
GGCTTCGTTACCCCTCCAAGAGTTTTAACTCTAGCANatttaaaaaaatg
caaaacacaGAATCTCTCTCCGATGATTTCGACTCATACTTTTTTATGAA
CGCTCTGTATAAAATTATTAGTAAATTCTTTAtcctttttttaattctta
atATTTCTTTGAGTTATACGATAAATAGTTAACTACTGCCCAACCAGTGG
AGCTAATCTTTAAATTAGtatattttttcaacattcttatTACTTTTTTA
TCCTGGTTCTAGTGTGGAATTCACACACGCGGGTCACTCCTTTCAAACGG
GAAATAAGGGGCTTCGTTACCCCTCCAAGAGTTTTAACTCTAGCACTTTC
GGAGTTTTAAACCCAGTGACCGATAGTTAAATTGGTATTTTTGCATACCG
CCCTCCCGCCCGATTAAAGTTTTATGATGAATGAGTGCGATATCTCCAGA
TATCCTTTGAAGCTGTCTTGAAAAGAATTCCATCTGGAACCATAGGTAAA
TCTTCATagaattaaaattt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045676-exon-scaffold_100-1491911889:409531..411150 | TCONS_00045676-exon-scaffold_100-1491911889:409531..411150 | Clytia hemisphaerica | exon |
| TCONS_00045676-exon-scaffold_100-1510915933:409531..411150 | TCONS_00045676-exon-scaffold_100-1510915933:409531..411150 | Clytia hemisphaerica | exon |
| TCONS_00045676-exon-scaffold_100-1575043694:409531..411150 | TCONS_00045676-exon-scaffold_100-1575043694:409531..411150 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_100 | supercontig | scaffold_100:409531..411150 + |
Blast
The following BLAST results are available for this feature:
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