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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045663 ID=TCONS_00045663|Name=TCONS_00045663|organism=Clytia hemisphaerica|type=transcript|length=710bp
cagcattgttcttaaattgttcttattttttgattattttgagtcagaaa
acattttcttgtcTTAATTTCCTGGTTTTTGAGAGAAGATACTGTAACGA
GACAAATCCAATTGATTTCGAGTCAACGgagtttttggaaagttttcggG
GAATAAAAGAGgtaAACCAATTCATTTGTCCGTTTGGCAATTTGACAAAC
TATAAACTTCAAAGATAAAAAATCACACAAAGCACTCTGTCCTCGACAAA
AAGACACATCGGAAATGGCAGCTTCCCGTGATCATGGCAAAAACAATACC
AGTGGTTACTCCTCATCATCTAGCGACGAAGACGTCAACATTGGATTTCC
GTTTGAGTTTTTGGAAACGGCGGATTTCCAATGTATAATTTGCACCCATG
TGATCAGAGGATTTACGGAGCTGCCATGTGGTCATGCTGGGTGCAAATTA
TGTATTGAAGAGTGGGAAAAACGAAAAGTggctTGCTGCGAATGTCAAAC
GGCATATGACAAGACAAAGAAACATGGAAGTCTGTACAATGACCGAAAAA
TCAAGCACGAAAAGCAAGCTCACTGCAAGCAACACGAGAAAGGCTGCACT
TGGCAAGGCTCCATTGATGATTACAAGCAGCAGCACCGCAAAAAGTGTGC
ATTCAGAAACGTCAGATGTCGTCTATGTAATCAAAAAGTCGCTCGTCAGG
AAAAGGATGG Run BLAST on NCBI transcript from alignment at scaffold_100:274341..285997+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045663 ID=TCONS_00045663|Name=TCONS_00045663|organism=Clytia hemisphaerica|type=transcript|length=11657bp|location=Sequence derived from alignment at scaffold_100:274341..285997+ (Clytia hemisphaerica)
cagcattgttcttaaattgttcttattttttgattattttgagtcagaaa
acattttcttgtcTTAATTTCCTGGTTTTTGAGAGAAGATACTGTAACGA
GACAAATCCAATTGATTTCGAGTCAACGgagtttttggaaagttttcggG
GAATAAAAGAGGTAAGTGAATCTCCATAAttggatacacgtttttttttt
attaggacacctaaaatttggctgagcctggatgtgcttattttttttag
caattttcagcctaaaatgttcttaaatgcgttcttaatttttcagacta
ctctaaatcgacaatatgatacaaaataaagagcacttaaatttggcaaa
atttggacaatatttgactctcgatttttgAAGATcaacccctaaattcg
gttaaaactgcttaaatagaggaaaaaattgtagtttcttgtcatttttt
tcaaactgaggctgcgcatgttcttaagatgttcttaatttttcgacgaa
tttcagcctatatgttcttataaactaggttctaataaaaaaaaacgtgt
attttatataaaaattgagTGTATGAGAATAAAgtataagaacataaatt
taaggatattttaagattttgcggATAATCTCAAACATGAAATTCCTCag
gaaatttcactaaaatattggtaAGGGTAAGATGagattacacttttttt
tttataaggaaccttaactttgctctgagcctggagttcattatttttac
agagaatttcagcctcaaagttccttatgaagttccttactacataggaa
attttgaactttttgccccttgaaagatcaaaatttggtcaaattagtcc
caataaggtacattattttcaaatccacttattcccagcctgagcagttc
cttaacaattccttattttttgaaccattttcagcctcgagttccttata
aatgtgttccttataaaaaaaaaacgtgtttatcaatattttaaaaataa
atccgAATAAGacgttaaaaaatgaaaatttgatgatttgatgacagaaa
tattaaaaaaaaggcTTAAATTCTTTCGGTGGACCTCCACAGGTTCCATC
TATAGTAACAATACATGGAAAATTGGTGCAAAGCAGCCTTCTTCGGGAAA
TTTGGGTTTCGACAGCTTTAGATTTTACTTCCGCAcatttttggcaaatt
taggGTTCACTTCCGACCATTAATGGCGCACTCCATCGGTTTTctagaaa
cttttgatttttttttacccaAGTTAAAGGTGTTGTATTTTAACTGGGTA
CCCTTTTTAACACAGTAAAcatatttttctggaaaagttaGACAGTTAAT
ATCTGTTTTTAGCAAAACCTCATACTTCAAAAGGTTAGTCCTTCTTACGT
TTCCTAGTTTAAATAGATATTTTTTAAAAGCATTACTGGACAAATCTGTA
TTCAAGATATCGACATATTGATGATTATCTTCAAGACTGCTGAAAGTTCA
AAAGTTTGAGAAAAAGGTGGGCAGTCATTTGTTCTCATTAAAAAGAATAT
TGCATAAgtaggaaaatatttttacgcTTCCTAAATTCCAACTTCAGCAT
GGAGTCTTTAAGAGTAATCCTCTTAAAATATAAAAGCTGATCCATGCTAA
GTTCAACCTTAATTTTCAACATTCAAATTAGGTTCAgttttagcctggga
atccatgctatgatttcttctttgataaactgatggcgaaatgtatagca
tggtacaggctgagagtttgaatttctcagatcctaaaaNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgaa
aacatagccaatcaaattttgttattcttttactggtcacactttcttag
agaaagcgcaactttcgaaatttggtttttattttagttagcGAGGAccg
cgctaaattcgaatttcccactgtaaaaaatgtgagtccaatattggact
cacagctcgaacccgtcttgtgtacatcaaattataaaaaaacacacgac
gggtctcctgtctagttCAGTTTAGGAAGGCAGTTACTAGTATTTGTTAT
CATCAAAAAAACAATATTGCATAAGTACGGTCATTCTTTTCACTTCCTAA
ATCCCGACTTCAGCATGGAGTCTTTAAGAGTAATCctcttaaaaataata
aaagctGTTCTATGCTAAGTTCAACCTTAAATTGTCAACATTCAAATTAG
GTTCAGTTTAGAACGAAATTAAGACTAATCGAAATACATAAACAAGATAT
TCCATTTCGTGAAGGTATCTCATTTAATGTAACTGCACACAAAAGGCATT
TTATTGAATCAATTAAATCGACTCTATCAACCGTCAAGGGAATGTTTTAC
AAAGCAATTTTGAAGTCAACATCATAAAAAAGATTTggagctatttaaaa
aaaaccattgttgtaaatttttgttcttaactttttgttcTCTTATCAAT
TTACTCCATTGAGTTTACTGGCACTCCCTCTTTCTTGTCATGAACTCAAA
GGGAACTCAAGTCTCCTTGGAAAGGCGTAGAAGNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtaatag
tgaaaccagttgtgacaaacagtcagttttagcaagtaccgtgaagtcgg
gtaacttgcatcagtggaggctaacttaTTGCATAggcatcaaatgactg
accaatcaaagcagcaaaatttcaaacaaatgaaCTCCACTTGCAGCTCt
agcctaccatttttgttttgatttaactttgtattttaatgaccaaacgg
gtcattcatttgaaggctatgcatgttagcctccactgatgcaagttacc
cgatctcacggtatttcCTAGAAATCATGTCATTTGTATAATCGAAACGA
CCCTGCCTAGACACTGCCGTACAGTCTCATTGTACCGTGATTTACGGTGG
GTAAGGGTGGGGTGTACAGTAaagcagatttcaaattaacctattttcac
cgccgtacaaaggacatttagatccagccccaccgtacaccaccgcacaa
tgtacagcggtccctcgttaatgattacagttttttatccgatgaagttt
gcaatgaagtttgattggtgttcgatgagttttgttagtaaaagttccag
cttttccttcNgggtcggaaaaactagagatgcactgtaagggtagagat
ttcagaaaattcttgaaaaatctagatattttgaccaaaaatgctagaat
ttttaccattttttgcacgaaaggatcgaaaatttgggggagaatgcact
ctaagggtatgattttcactgatttttgctgcactgtaagggtgcaattt
taaaagccaattattggcccgcacataccgtcagtccgcaaacccagtgc
ccccccccggggcgtAGAAGTATCGTTGCTTAAGATGACATCAACGAGAG
GGGTACAAAAATTTACATTGACAGTAAAttccttcaatttttattttttt
taggtaAACCAATTCATTTGTCCGTTTGGCAATTTGACAAACTATAAACT
TCAAAGATAAAAAATCACACAAAGCACTCTGTCCTCGACAAAAAGACACA
TCGGAAATGGCAGCTTCCCGTGATCATGGCAAAAACAATACCAGTGGTTA
CTCCTCATCATCTAGCGACGAAGACGTCAACATTGGATTTCCGTTTGAGT
TTTTGGAAACGGCGGATTTCCAATGTATAATTTGCACCCATGTGATCAGA
GGATTTACGGAGCTGCCATGTGGTCATGCTGGGTGCAAATTATGTATTGA
AGAGTGGGAAAAACGAAAAGTGTAAGTCTGTTCTTTTCTACCTAAAGAGA
AACTTTAGTATGCGATCGTATCGACAAAGGGATAGTttattacgatagcc
ttccgtgtgtatgtatgtatgtatgtggcGAGACATTTtatggggcgcaa
attatggcgtgggcgtttggctgcgggcgtactacggNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNttaggattttcattttgaatcatagtac
cgttgtttgtataagattcccatttccgcactaagattcttgtctgcttg
ttacttttctggaatctttccccttCATCTTtttggggagggtttgttta
atgggatgcagtttaaagcagttataatAAAGGAGTTNTCTGTCCTCGAC
AAAAAAACACATCGGAAATGGCAGCTTCCCGTGATCATGGCAACAACAAC
ATCAACGGTTACTCCTCATCATCTAGCGACGAAGACGTAAACATTGGATT
TCCGTTTGAGTTTTTGGAAACGGCGGATTTCCAATGTATAATTTGCACCC
ATGTGATCAGAGGATTTACGGAGCTGCCATGTGGTCATGCTGGGTGCAAA
TTATGTATTGAAGAGTGGGAAAAACGAAAAGTGTAAGTCTGTTCTTTTCT
ACCTAAAGAGAAACTTTAGTATGCGATCGTATCGACAAAGGGATAGTtta
ttacgatagccttccgtgtgtatgtatgtatgtatgtggcGAGACATTTt
atggggcgcaaattatggcgtgggcgtttggctgcgggcgtactacggNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNCgcaagtgaaagaagtctttatcac
aagttccttcaaagcacaaaatgagggttctggcatcaaagaatgaaaag
ttcattttttcttcttcattttcaaaaacaattaaaattatttttctcaa
gtatataTTGCggttctctgaattattctgaaatgaaagattttgtttac
gctttatagaatggaattctttagtcacattttttaaggaatcttttttt
taatggattgagatttttcataaaaaacagggtatctatgacctatgtgt
acaatacattctctatattttgttcaaaatgcataatgctgcaggagtca
cgtatcacgcgtcttcgtcgttgatgttcaagtattatgcgaaattttcg
actttaagttgtcttgtttttttttgatatCTTATTTGATAGTGAAAACA
TAaaggctttttttgtaaaaaagaaatgcttaataagaataaattaagaa
cagcctcaaattttagaaataacaaccaagaaaatattgaatttatcCTT
TTTGTAAGCCAATAGTAAATGAACAGAGTAAGCAacaaattaggaacatt
ttaagaacattggagcaatgaaatcaacaaaataagaacagccgagctgA
TTTATTTATTGTCGTACCTCCGATACCCTCTAACGAAATATTTAGTTGac
atggagtttttataagaacaaataatccatccattttcagggctTGCTGC
GAATGTCAAACGGCATATGACAAGACAAAGGTAGATAATAAATTCTTATC
TTTTTCAAGTTCTATAATAAATCAATTCAGggaaatttcatcacttttta
aaCTGGGTTTTAAAGACCCTTTGCAAGAAAGTTTGCGAGCAAGCGAATGA
TTTTCAAAACCAACCCTTTTCACAATGTTCTCGTCAAGAAGGTTTGTGAA
CAAGTGAATACCTAAAAGTGATTTTCAAAACCAACACAACAATAGTTTGC
AGAGAGGTATGAACCCACTAGGTTTATTTcactaaccccccccccccccc
tttcacctttcttttataaaaaaaaaaaaattttcaaaaaagtatgaACC
CCCAAGTTTTTTTtccctacccccccccccccgcctaTGTACGTCTTTAA
ATAACATAATACACTTTTGTGTTATGATGATacatatttttactttaaaa
cagACAGACTGTGACCATTTGTAAATGATTAAGTTgatcaaaattttcaa
cttcccTTTCTTATTTGAACCCCTTAGCCTAATCTTGGAACATCCTACTA
AAGTCCCCATAAAAGTTGCTGTTCCTCCCTATTAAAAAGAGGGGTGCAAT
CTATGCAACGATTGAAGTGATGTTAAGAATGGTCAATTAATTTTCAGAAA
CATGGAAGTCTGTACAATGACCGAAAAATCAAGCACGAAAAGCAAGCTCA
CTGCAAGCAACACGAGAAAGGCTGCACTTGGCAAGGCTCCATTGATGATT
ACAAGCAGCAGGTTAGTTCATGTTTTTCGAGAACACTTTAACTTAAATAT
AGACTTTACAGAGTTTTCGTCGTTAATCGCAAAGTCTTGTATGTTTCTGT
GACTCTTTTAATTTACAAATGTAACTCTATTGGCAGGTAATGATCATATA
AGATAATTCGAAGTATGATTCTTAATTCATGatcatagtttgcagagggg
tatgaacccccctaggtttatttcatccccccctatataccNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcccccccttttttattt
gatccccccctacattcccatcccccctagttttttcggcagatctcggt
accccccctacaaaggccctccaaaaagttggcatccccccctattaaaa
agggggggtgcaaactatgatgATATTCGGgacgtaatcttttctacgAA
AACACCCCGGTCTTTGctagtagtggcaaattttgaagaatttttctcta
tttttaatTTGCCACTACCTGCAAAAACCGGGGTGTTTccgtaaaaaaaa
ttacatcatgaatatcatgaatacgaCCTAAAACATTAAATTGGAGTAAT
TCGGATAcgattttcttttaaacaaactAGCACCGCAAAAAGTGTGCATT
CAGAAACGTCAGATGTCGTCTATGTAATCAAAAAGTCGCTCGTCAGGAAA
AGGATGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045663-exon-scaffold_100-1491911889:274341..274501 | TCONS_00045663-exon-scaffold_100-1491911889:274341..274501 | Clytia hemisphaerica | exon |
| TCONS_00045663-exon-scaffold_100-1510915933:274341..274501 | TCONS_00045663-exon-scaffold_100-1510915933:274341..274501 | Clytia hemisphaerica | exon |
| TCONS_00045663-exon-scaffold_100-1575043694:274341..274501 | TCONS_00045663-exon-scaffold_100-1575043694:274341..274501 | Clytia hemisphaerica | exon |
| TCONS_00045663-exon-scaffold_100-1491911889:279494..279811 | TCONS_00045663-exon-scaffold_100-1491911889:279494..279811 | Clytia hemisphaerica | exon |
| TCONS_00045663-exon-scaffold_100-1510915933:279494..279811 | TCONS_00045663-exon-scaffold_100-1510915933:279494..279811 | Clytia hemisphaerica | exon |
| TCONS_00045663-exon-scaffold_100-1575043694:279494..279811 | TCONS_00045663-exon-scaffold_100-1575043694:279494..279811 | Clytia hemisphaerica | exon |
| TCONS_00045663-exon-scaffold_100-1491911889:284131..284170 | TCONS_00045663-exon-scaffold_100-1491911889:284131..284170 | Clytia hemisphaerica | exon |
| TCONS_00045663-exon-scaffold_100-1510915933:284131..284170 | TCONS_00045663-exon-scaffold_100-1510915933:284131..284170 | Clytia hemisphaerica | exon |
| TCONS_00045663-exon-scaffold_100-1575043694:284131..284170 | TCONS_00045663-exon-scaffold_100-1575043694:284131..284170 | Clytia hemisphaerica | exon |
| TCONS_00045663-exon-scaffold_100-1491911889:284788..284901 | TCONS_00045663-exon-scaffold_100-1491911889:284788..284901 | Clytia hemisphaerica | exon |
| TCONS_00045663-exon-scaffold_100-1510915933:284788..284901 | TCONS_00045663-exon-scaffold_100-1510915933:284788..284901 | Clytia hemisphaerica | exon |
| TCONS_00045663-exon-scaffold_100-1575043694:284788..284901 | TCONS_00045663-exon-scaffold_100-1575043694:284788..284901 | Clytia hemisphaerica | exon |
| TCONS_00045663-exon-scaffold_100-1491911889:285921..285997 | TCONS_00045663-exon-scaffold_100-1491911889:285921..285997 | Clytia hemisphaerica | exon |
| TCONS_00045663-exon-scaffold_100-1510915933:285921..285997 | TCONS_00045663-exon-scaffold_100-1510915933:285921..285997 | Clytia hemisphaerica | exon |
| TCONS_00045663-exon-scaffold_100-1575043694:285921..285997 | TCONS_00045663-exon-scaffold_100-1575043694:285921..285997 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_100 | supercontig | scaffold_100:274341..285997 + |
Blast
The following BLAST results are available for this feature:
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