TCONS_00045653 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045653
Unique NameTCONS_00045653
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1178

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045653 ID=TCONS_00045653|Name=TCONS_00045653|organism=Clytia hemisphaerica|type=transcript|length=1178bp
tagccttaaaatgttcttaacttgtttttaatatctTAGCCATCGAagtc
gaagccttatattcttatatagtttgttctcataaaaaaatgtatactct
ggtattcttataaagactGCCTTATAAAATACAGATACAAtcgactctcg
cttattcgaacttctataattcgaatctctctgttatACGAACAAATAGA
TATTCCCCGTTCGAGTTTGAATTAGTGAAGGTTAACCGTAAAAAGAGTTG
AATATGGACCATTCAAATATGAACCACACCATGCCAGAGATAAATGGTAC
AAATCACCACAACCATCATCAAATGAACAACACTGGAAACCATATGATGG
GACATCAGATGCCGATGTATTTCCATGGAGGAACGATGGTAACTTTGTTC
TTCAAAGATTGGATGACGATGAACCAATCAGagtTTGATGGAGCATGTGT
TGCTTTGTTCGTGTTGGCAACTTTGTATGAGGGATTGAAAATATTGCGAA
AGTTTTTGTTGGTTAAAATGCTGAATGATAAGAAAGTGCGGGACGTCAAC
CCCTCAATCTCAAAATCTTCACAGCAAAAAGACGATGCAATCACTATTCA
CAATAAACAAATGTTCAAAATACGGGTCATTGTCCACCTGATCCAGACTG
TTTTGCATGTCATTCAAGTGTTCCTTGGTTATCTGCTCATGTTGGCTTTC
ATGACGTACAATTCTTTAGTATGTGTGTCCATTCTCCTGGGGTATGGTTT
CGGATATCTGGTGTTCGCTTGGTATGATCTGACGATCGCCAATGGTGTAG
CTGTGAAGACGAATGATAGCGATTGTTGTAATTTATAACAGGAAATACAT
TGGAAAAATCACAGATTTATTGAGCGAATTCTCTATTCTTTCATTAACTT
GCAGTTTTAAGCTAACCTTTTTCAATAGACTAGGgcggaaaaaatgaaat
tagttTGATGAATCAGATATCAAATTCCCAAGGTAGTTTAAAtggttttt
gaaagaaagaaatagAGTAATTTTGTGATAAAAATCTGTTTGGCGATGCG
GTCAAAGATAAGCTTATGGTTTTATCAAGCAACGACTTTTGTTTCGACAG
AAACTGTCAGTAAGTCAAAGTCATGCGTCACTAGATCAAAGGGTTTTAAA
TGGATTTTTTGGATTAATATTATCATCA
Run BLAST on NCBI

protein sequence of TCONS_00045653-protein

>TCONS_00045653-protein ID=TCONS_00045653-protein|Name=TCONS_00045653-protein|organism=Clytia hemisphaerica|type=polypeptide|length=194bp
MDHSNMNHTMPEINGTNHHNHHQMNNTGNHMMGHQMPMYFHGGTMVTLFF
KDWMTMNQSEFDGACVALFVLATLYEGLKILRKFLLVKMLNDKKVRDVNP
SISKSSQQKDDAITIHNKQMFKIRVIVHLIQTVLHVIQVFLGYLLMLAFM
TYNSLVCVSILLGYGFGYLVFAWYDLTIANGVAVKTNDSDCCNL
Run BLAST on NCBI

transcript from alignment at scaffold_100:197514..200980+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045653 ID=TCONS_00045653|Name=TCONS_00045653|organism=Clytia hemisphaerica|type=transcript|length=3467bp|location=Sequence derived from alignment at scaffold_100:197514..200980+ (Clytia hemisphaerica)
tagccttaaaatgttcttaacttgtttttaatatctTAGCCATCGAagtc
gaagccttatattcttatatagtttgttctcataaaaaaatgtatactct
ggtattcttataaagactGCCTTATAAAATACAGATACAAtcgactctcg
cttattcgaacttctataattcgaatctctctgttatACGAACAAATAGA
TATTCCCCGTTCGAGTTTGAATTAGTGAAGGTTAACCGTAAAAAGAGTTG
AATATGGACCATTCAAATATGAACCACACCATGCCAGAGATAAATGGTAC
AAATCACCACAACCATCATCAAATGAACAACACTGGAAACCATATGATGG
GACATCAGGTACAATATAATAATGgacactctctctaattcgatattctA
CTATTCCATACGCaagatacgctccattattccataatattgaaagtcac
tgtcaaCAAGAAATTTTCATAAACGCCCCTCTACCATATCTATACGCttt
cttattcgatgaaaaatcCAATTCCCATTGAAAATCAAAGTAGAGAAAGT
CAACTCTATTcctttttgtacaaagatgtataatttgattttcttctaat
ttttttcacctCAAAGATGGTCTTTCTATCTCTACTCTGTACAGAATCGC
ACTATCGAATAAACATTTTTCAGTAAATAAGGTCGTTATTAGGTGATTGA
TTGTCTTTAACGGTGATTTTATTGTTCATTTCTTCTCGACATTTTACCGA
TGAAGTACTCTTTCTATCTAAAGGATCATGACGTTTCAATTTTCCAGATA
AGATTTACTGTTTCTGTCAATAATTCACATTTTCAGATGCCGATGTATTT
CCATGGAGGAACGATGGTAACTTTGTTCTTCAAAGATTGGATGACGATGA
ACCAATCAGGTCAGCTCAGATTTTCAAGCCTCCAATAAATAAAGGATATC
TATCATTATCGAGGACTTGACATAGAGTAAGATGGCCGCGTGGTTAAGGC
GTCAACGTGTTGAACAGGGAGTTCGCGGTTCGAATCCTTTCTTCAAACGT
TCTGGTAGTTCTTGAACAGTAACCGGACCGGCTGGTCGTGGACTCTGTGA
AAACAATCGGAAGACTGATGATGTTATTTTTTACGTAGTCGGCATAATGT
AATAAACTAAAAATCCTTTATACATATCGACACTTCAGAATGGCGTGAAA
AATAACGGCAGTTTCAGAACACATATATACGACTTAGCCGACTGTCTAAC
GCTAACAATCCTATATTACTGGGATATCTGTGCAGTCTGTGTATAGTAAG
ATACCGCCTCTATGCATTAGTGTTGTGTATGAAATCAAATAACAATTCAG
GAGTTGAAAAGTCAGTTAACCTGAAATAATaaacaacgaaaaaaaaattc
actttcattttcagagtTTGATGGAGCATGTGTTGCTTTGTTCGTGTTGG
CAACTTTGTATGAGGGATTGAAAATATTGCGAAAGTTTTTGTTGGTTAAA
ATGCTGAATGATAAGAAAGTGCGGGACGTCAACCCCTCAATGTAAGTATG
ATTATgagcaatgaagtataagcccgaagggctagaatcgaatcttctTG
GTAAGATTTGAAGCCTgccaaatcctaccaaagttgcgcggcctagcgcg
gtccgcctggtttttacaaaaatgacagattgaaactaaaatttacagcT
AAAtttagattcaatctgtcgtcaaaattacggcgcatattttaaggctt
cacttttccttgcctgagaaaggttaaagtttCGATTCTAACCCTTTGGC
CTTATACTTTATTGTTGATTATAAGCAAACTGTCGAACCCAGTCTATTAG
TtcgcttttttatgattctgatagcctATCAGTAAAATCTAAAAAGTGGC
GCAATGGGTTCTGGGTACGAAATTCGATTATAAAGTACGATTTACAACAC
CATCATTTCTGTATACTGGTTTTTTAAATCAAACAAACTCACCCTACAGC
TTAGGCAAAATATTGCTACTGAATGTGTTGGATATAGATTTGTTACTTTT
AGCCTTTGTATATATATTATGATTTAATGTTATTTATGTAATATGAAGAT
GTTATATGTACATAATATGCTTGTTACATgtattatatattttatattat
gGTATTATGTTACCCTCTACAATGGAGATCTCATGTTTGCATGTTGAAGA
GTCTTGATCTCCATTGTCCCCAGTGCACTCCTCCTTTGTTTCCTTTCTGG
AAGAATGGGCCTGAGTGAGCTCTCCTCCTTGTCATGTGGTTTTATAAGAG
CCTGCTCTCTCCAGCAAGGATGAGTTGAAGCCTGACCATCGACAAGATAA
GGTACTTTGATATTGATATATTAACATGAGGATCCTAGGTTATGTATTAG
GATTTATTCAGGACAAATGTCTTACAATGTAAATATATTTCAGTCAAGTC
ATGTTAATACCTTTGGTCTCTCATCATATTAAAAGATCAAAACAGCCACC
CAACAAATGCAATCTTTGTTTCAGCTCAAAATCTTCACAGCAAAAAGACG
ATGCAATCACTATTCACAATAAACAAATGTAAGTTCACGTAAATTGAGTA
ATCATTATTAATCTAACAATATAATAGGGGTTCTAAACCCAGCACTCTTT
cccattttaaaattatttcttgctcaACGCAACGTCAAAAATGGTGGCGT
TTTAGTTTTGGATTTTACATATTAAGTGACGTCAATAcagcaataaaaaa
atttatagattttgacgtcaatttacgTAAGCTTGGCCTTGTATTTAGCT
CTATGTTAAATATGGCGAAGGAAAATGTCTTACATTGTTCATTGATCCTC
AGGAAAGCACAGATTCGATTTCTGCAGGTCAGTACTTGTTCTATATTGCA
GGTTCAAAATACGGGTCATTGTCCACCTGATCCAGACTGTTTTGCATGTC
ATTCAAGTGTTCCTTGGTTATCTGCTCATGTTGGCTTTCATGACGTACAA
TTCTTTAGTATGTGTGTCCATTCTCCTGGGGTATGGTTTCGGATATCTGG
TGTTCGCTTGGTATGATCTGACGATCGCCAATGGTGTAGCTGTGAAGACG
AATGATAGCGATTGTTGTAATTTATAACAGGAAATACATTGGAAAAATCA
CAGATTTATTGAGCGAATTCTCTATTCTTTCATTAACTTGCAGTTTTAAG
CTAACCTTTTTCAATAGACTAGGgcggaaaaaatgaaattagttTGATGA
ATCAGATATCAAATTCCCAAGGTAGTTTAAAtggtttttgaaagaaagaa
atagAGTAATTTTGTGATAAAAATCTGTTTGGCGATGCGGTCAAAGATAA
GCTTATGGTTTTATCAAGCAACGACTTTTGTTTCGACAGAAACTGTCAGT
AAGTCAAAGTCATGCGTCACTAGATCAAAGGGTTTTAAATGGATTTTTTG
GATTAATATTATCATCA

Coding sequence (CDS) from alignment at scaffold_100:197514..200980+

>TCONS_00045653 ID=TCONS_00045653|Name=TCONS_00045653|organism=Clytia hemisphaerica|type=CDS|length=2925bp|location=Sequence derived from alignment at scaffold_100:197514..200980+ (Clytia hemisphaerica)
ATGGACCATTCAAATATGAACCACACCATGCCAGAGATAAATGGTACAAA
TCACCACAACCATCATCAAATGAACAACACTGGAAACCATATGATGGGAC
ATCAGATGCCGATGTATTTCCATGGAGGAACGATGGTAACTTTGTTCTTC
AAAGATTGGATGACGATGAACCAATCAGagtTTGATGGAGCATGTGTTGC
TTTGTTCGTGTTGGCAACTTTGTATGAGGGATTGAAAATATTGCGAAAGT
TTTTGTTGGTTAAAATGCTGAATGATAAGAAAGTGCGGGACGTCAACCCC
TCAATCTCAAAATCTTCACAGCAAAAAGACGATGCAATCACTATTCACAA
TAAACAAATGTTCAAAATACGGGTCATTGTCCACCTGATCCAGACTGTTT
TGCATGTCATTCAAGTGTTCCTTGGTTATCTGCTCATGTTGGCTTTCATG
ACGTACAATTCTTTAGTATGTGTGTCCATTCTCCTGGGGTATGGTTTCGG
ATATCTGGTGTTCGCTTGGTATGATCTGACGATCGCCAATGGTGTAGCTG
TGAAGACGAATGATAGCGATTGTTGTAATTTATAAATGGACCATTCAAAT
ATGAACCACACCATGCCAGAGATAAATGGTACAAATCACCACAACCATCA
TCAAATGAACAACACTGGAAACCATATGATGGGACATCAGATGCCGATGT
ATTTCCATGGAGGAACGATGGTAACTTTGTTCTTCAAAGATTGGATGACG
ATGAACCAATCAGagtTTGATGGAGCATGTGTTGCTTTGTTCGTGTTGGC
AACTTTGTATGAGGGATTGAAAATATTGCGAAAGTTTTTGTTGGTTAAAA
TGCTGAATGATAAGAAAGTGCGGGACGTCAACCCCTCAATCTCAAAATCT
TCACAGCAAAAAGACGATGCAATCACTATTCACAATAAACAAATGTTCAA
AATACGGGTCATTGTCCACCTGATCCAGACTGTTTTGCATGTCATTCAAG
TGTTCCTTGGTTATCTGCTCATGTTGGCTTTCATGACGTACAATTCTTTA
GTATGTGTGTCCATTCTCCTGGGGTATGGTTTCGGATATCTGGTGTTCGC
TTGGTATGATCTGACGATCGCCAATGGTGTAGCTGTGAAGACGAATGATA
GCGATTGTTGTAATTTATAAATGGACCATTCAAATATGAACCACACCATG
CCAGAGATAAATGGTACAAATCACCACAACCATCATCAAATGAACAACAC
TGGAAACCATATGATGGGACATCAGATGCCGATGTATTTCCATGGAGGAA
CGATGGTAACTTTGTTCTTCAAAGATTGGATGACGATGAACCAATCAGag
tTTGATGGAGCATGTGTTGCTTTGTTCGTGTTGGCAACTTTGTATGAGGG
ATTGAAAATATTGCGAAAGTTTTTGTTGGTTAAAATGCTGAATGATAAGA
AAGTGCGGGACGTCAACCCCTCAATCTCAAAATCTTCACAGCAAAAAGAC
GATGCAATCACTATTCACAATAAACAAATGTTCAAAATACGGGTCATTGT
CCACCTGATCCAGACTGTTTTGCATGTCATTCAAGTGTTCCTTGGTTATC
TGCTCATGTTGGCTTTCATGACGTACAATTCTTTAGTATGTGTGTCCATT
CTCCTGGGGTATGGTTTCGGATATCTGGTGTTCGCTTGGTATGATCTGAC
GATCGCCAATGGTGTAGCTGTGAAGACGAATGATAGCGATTGTTGTAATT
TATAAATGGACCATTCAAATATGAACCACACCATGCCAGAGATAAATGGT
ACAAATCACCACAACCATCATCAAATGAACAACACTGGAAACCATATGAT
GGGACATCAGATGCCGATGTATTTCCATGGAGGAACGATGGTAACTTTGT
TCTTCAAAGATTGGATGACGATGAACCAATCAGagtTTGATGGAGCATGT
GTTGCTTTGTTCGTGTTGGCAACTTTGTATGAGGGATTGAAAATATTGCG
AAAGTTTTTGTTGGTTAAAATGCTGAATGATAAGAAAGTGCGGGACGTCA
ACCCCTCAATCTCAAAATCTTCACAGCAAAAAGACGATGCAATCACTATT
CACAATAAACAAATGTTCAAAATACGGGTCATTGTCCACCTGATCCAGAC
TGTTTTGCATGTCATTCAAGTGTTCCTTGGTTATCTGCTCATGTTGGCTT
TCATGACGTACAATTCTTTAGTATGTGTGTCCATTCTCCTGGGGTATGGT
TTCGGATATCTGGTGTTCGCTTGGTATGATCTGACGATCGCCAATGGTGT
AGCTGTGAAGACGAATGATAGCGATTGTTGTAATTTATAAATGGACCATT
CAAATATGAACCACACCATGCCAGAGATAAATGGTACAAATCACCACAAC
CATCATCAAATGAACAACACTGGAAACCATATGATGGGACATCAGATGCC
GATGTATTTCCATGGAGGAACGATGGTAACTTTGTTCTTCAAAGATTGGA
TGACGATGAACCAATCAGagtTTGATGGAGCATGTGTTGCTTTGTTCGTG
TTGGCAACTTTGTATGAGGGATTGAAAATATTGCGAAAGTTTTTGTTGGT
TAAAATGCTGAATGATAAGAAAGTGCGGGACGTCAACCCCTCAATCTCAA
AATCTTCACAGCAAAAAGACGATGCAATCACTATTCACAATAAACAAATG
TTCAAAATACGGGTCATTGTCCACCTGATCCAGACTGTTTTGCATGTCAT
TCAAGTGTTCCTTGGTTATCTGCTCATGTTGGCTTTCATGACGTACAATT
CTTTAGTATGTGTGTCCATTCTCCTGGGGTATGGTTTCGGATATCTGGTG
TTCGCTTGGTATGATCTGACGATCGCCAATGGTGTAGCTGTGAAGACGAA
TGATAGCGATTGTTGTAATTTATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029189XLOC_029189Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045653-exon-scaffold_100-1491911889:197514..197871TCONS_00045653-exon-scaffold_100-1491911889:197514..197871Clytia hemisphaericaexon
TCONS_00045653-exon-scaffold_100-1510915933:197514..197871TCONS_00045653-exon-scaffold_100-1510915933:197514..197871Clytia hemisphaericaexon
TCONS_00045653-exon-scaffold_100-1575043694:197514..197871TCONS_00045653-exon-scaffold_100-1575043694:197514..197871Clytia hemisphaericaexon
TCONS_00045653-exon-scaffold_100-1491911889:198350..198422TCONS_00045653-exon-scaffold_100-1491911889:198350..198422Clytia hemisphaericaexon
TCONS_00045653-exon-scaffold_100-1510915933:198350..198422TCONS_00045653-exon-scaffold_100-1510915933:198350..198422Clytia hemisphaericaexon
TCONS_00045653-exon-scaffold_100-1575043694:198350..198422TCONS_00045653-exon-scaffold_100-1575043694:198350..198422Clytia hemisphaericaexon
TCONS_00045653-exon-scaffold_100-1491911889:198928..199054TCONS_00045653-exon-scaffold_100-1491911889:198928..199054Clytia hemisphaericaexon
TCONS_00045653-exon-scaffold_100-1510915933:198928..199054TCONS_00045653-exon-scaffold_100-1510915933:198928..199054Clytia hemisphaericaexon
TCONS_00045653-exon-scaffold_100-1575043694:198928..199054TCONS_00045653-exon-scaffold_100-1575043694:198928..199054Clytia hemisphaericaexon
TCONS_00045653-exon-scaffold_100-1491911889:200038..200091TCONS_00045653-exon-scaffold_100-1491911889:200038..200091Clytia hemisphaericaexon
TCONS_00045653-exon-scaffold_100-1510915933:200038..200091TCONS_00045653-exon-scaffold_100-1510915933:200038..200091Clytia hemisphaericaexon
TCONS_00045653-exon-scaffold_100-1575043694:200038..200091TCONS_00045653-exon-scaffold_100-1575043694:200038..200091Clytia hemisphaericaexon
TCONS_00045653-exon-scaffold_100-1491911889:200415..200980TCONS_00045653-exon-scaffold_100-1491911889:200415..200980Clytia hemisphaericaexon
TCONS_00045653-exon-scaffold_100-1510915933:200415..200980TCONS_00045653-exon-scaffold_100-1510915933:200415..200980Clytia hemisphaericaexon
TCONS_00045653-exon-scaffold_100-1575043694:200415..200980TCONS_00045653-exon-scaffold_100-1575043694:200415..200980Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045653-proteinTCONS_00045653-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_100supercontigscaffold_100:197514..200980 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.150549	0.298883	0.125093	0.124569	0.54897	0.204048	0.517281	0.495041	0.529822	0.663064	0.0959513	0.227161	8.19079	10.0489	4.46017	6.65816	0.394965	1.08925	11.336	9.14932	1.21704	0.891843	1.85581	1.2664	3.38688	4.4201	0.222971	0.191095	2.56035	0.908871
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR007274Cop_transporter
Vocabulary: Biological Process
TermDefinition
GO:0035434copper ion transmembrane transport
Vocabulary: Molecular Function
TermDefinition
GO:0005375copper ion transmembrane transporter activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0035434 copper ion transmembrane transport
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005375 copper ion transmembrane transporter activity
Blast
[Close]
BLAST of TCONS_00045653 vs. Swiss-Prot (Human)
Match: COPT1 (High affinity copper uptake protein 1 OS=Homo sapiens GN=SLC31A1 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.374e-20
Identity = 57/143 (39.86%), Postives = 75/143 (52.45%), Query Frame = 2 
Query:  362 PMYFHGG-TMVTLFFKDWMTMNQSEFDGACVALFVLATLYEGLKILRKFLLVK-----MLNDKKVRDVNPSISKSSQQKDDAITIHNKQMFKIRVIVHLIQTVLHVIQVFLGYLLMLAFMTYNSLVCVSILLGYGFGYLVFAW 772
            PM F+ G   V L F   +     E  GA VA+F+LA  YEGLKI R+ LL K       N   V   N +I   + +         +QM       HL+QTVLH+IQV + Y LML FMTYN  +C+++  G G GY +F+W
Sbjct:   44 PMTFYFGFKNVELLFSGLVINTAGEMAGAFVAVFLLAMFYEGLKIARESLLRKSQVSIRYNSMPVPGPNGTILMETHKTV------GQQMLSFP---HLLQTVLHIIQVVISYFLMLIFMTYNGYLCIAVAAGAGTGYFLFSW 177
The following BLAST results are available for this feature:
BLAST of TCONS_00045653 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
COPT13.374e-2039.86High affinity copper uptake protein 1 OS=Homo sapi... [more]
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