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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045644 ID=TCONS_00045644|Name=TCONS_00045644|organism=Clytia hemisphaerica|type=transcript|length=1065bp
CTTTTTCATTCTAAATAAATGCCTATTTTTTATCATCAACTTTAAATTTT
TGTCTATAttttcaatagaaaaaatatcatcaacgAAGGAGAGCTAAATA
ACACACTCTCAAATCACGACTTTCGATTGTAGAATTCTTTTCCACGGCCA
AGATGGTGGGTACATCTTCTGAGTTTTATGATAATATACCTCTACTCTAT
CTTGCTTTATCTTTCGAATCGTTGCTGGAAGCTGAAAATGGATAATGGAT
TTCTACTCTCTATACCTTTTGGTTTTTATTTGTTAGGGTATTGACTTGGA
CCATCGCAAAGACAAGAAGAAAAGCCGAAAGGCTCCAGTCTCCCAGGACC
CCTACATTCGCCTTTTGGTGAAATTGTACCGCTTTCTTGCTCGAAGAACT
AACTCAAAGTTCAATGAAGTTATCTTAAAGAGATTGTTTATGAGCCGTAT
CAACAGACCACCACTCTCCATTGCTCGCATTGCCAGAAGAGTAAGCAAAC
CAGGATGTGAAGGAAAAATCATTGTCTGTGTTGGATCAATTACTGATGAC
CTAAGATTGACAACTGTACCCAAATTAAAGGTTTGTGCTCTGAGATTCAC
TGAAGGAGCAAGAACAAGAATTACAAAAGCTGGTGGTGAATGCATCACCT
TCGATCAATTGGCCCTCAAAGCTCCAACTGGCAAAGGCACTCTTTTAATC
CAAGGCCCAAGAAACTCTCGTGAATCATGCAGGCATTTTGGACGTGCTCC
AGGTGTTCCCCACAGCTCTACCAAGCCATTTGTTCGAGCAAAGGGACGCA
AATTCGAAAAGGCCCGTGGTCGTCGTGCAAGTCGTGGTTACAAAGTGTAA
AATTCTTGGctgtaataaaaatgatggttaTCACAAtcaatgtttctttt
ctttccttATTAATATTCTTGCGATCTTTGACATCGAATTATGTCCATTT
CTAGCTGAAATCTGCTTTTCGGAGGTCCTCTAattaagggcagaaagttt
gagaccgaaaagtcgcgaaatttcgcggatttaagtttcgggtttttttc
ttttttaagaaaatt Run BLAST on NCBI transcript from alignment at scaffold_100:132041..140166+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045644 ID=TCONS_00045644|Name=TCONS_00045644|organism=Clytia hemisphaerica|type=transcript|length=8126bp|location=Sequence derived from alignment at scaffold_100:132041..140166+ (Clytia hemisphaerica)
CTTTTTCATTCTAAATAAATGCCTATTTTTTATCATCAACTTTAAATTTT
TGTCTATAttttcaatagaaaaaatatcatcaacgAAGGAGAGCTAAATA
ACACACTCTCAAATCACGACTTTCGATTGTAGAATTCTTTTCCACGGCCA
AGATGGTGGGTACATCTTCTGAGTTTTATGATAATATACCTCTACTCTAT
CTTGCTTTATCTTTCGAATCGTTGCTGGAAGCTGAAAATGGATAATGGAT
TTCTACTCTCTATACCTTTTGGTTTTTATTTGTTAGGGTATTGACTTGGA
CCATCGCAAAGACAAGAAGAAAAGCCGAAAGGCTCCAGTCTCCCAGGACC
CCTACATTCGCCTTTTGGTGAAAGTAAGTTTTAGGTTTAAGTCCTTGAAT
TTCAACTGCTTCTGTTGGTTTTCActtgaaacaaaattttgactatGATG
TTGATTATCAGCTTCAAGGGTGTTCacacttttttaaattattactGTAG
TTCAGAAGCTGGCTGGAGTAGAGCTCAACTACTTTCTTGCCTTTAATAAT
TTTGATGGGCTATTGCAgtgccatcattcaaatcagaaagtgAAGATTGT
ACAAANTTACACGAAATTGCACTCCTACATAAGCAAAGTTACATGTAGAT
GTTGCTAATCATTAAATCATaaatttagtcaaatttttggtgTTTTAACT
GGTTTTTATGCAAAATCGTCTTTTTCATTCTAAATAAATGCCTATTTTTT
ATCATCAACTTTAAATTTTTGTCTATAttttcaatagaaaaaatatcatc
aacgAAGGAGAGCTAAATAACACACTCTCAAATCACGACTTTCGATTGTA
GAATTCTTTTCCACGGCCAAGATGGTGGGTACATCTTCTGAGTTTTATGA
TAATATACCTCTACTCTATCTTGCTTTATCTTTCGAATCGTTGCTGGAAG
CTGAAAATGGATAATGGATTTCTACTCTCTATACCTTTTGGTTTTTATTT
GTTAGGGTATTGACTTGGACCATCGCAAAGACAAGAAGAAAAGCCGAAAG
GCTCCAGTCTCCCAGGACCCCTACATTCGCCTTTTGGTGAAAGTAAGTTT
TAGGTTTAAGTCCTTGAATTTCAACTGCTTCTGTTGGTTTTCActtgaaa
caaaattttgactatGATGTTGATTATCAGCTTCAAGGGTGTTCacactt
ttttaaattattactGTAGTTCAGAAGCTGGCTGGAGTAGAGCTCAACTA
CTTTCTTGCCTTTAATAATTTTGATGGGCTATTGCAgtgccatcattcaa
atcagaaagtgAAGATTGTACAAGGCAGATTTTTTGACTATTATTGCTTT
ATTACATTACATTTTCAGTTGTACCGCTTTCTTGCTCGAAGAACTAACTC
AAAGTTCAATGAAGTTATCTTAAAGAGATTGTTTATGAGCCGTATCAACA
GACCACCACTCTCCATTGCTCGCATTGTAAGTATTGTGTCAAGGCCTGTT
TTAATCGATTCCACGGCTGTGCAAAGCTTGGTCAAATTTCCTGAAATAAC
ACATTGGGTACAAGATGTTTTTAGTTAACTCGTTGttcaattgaattgaa
ttgaatatataaTTTCACTGACCCTGGTGGAGGAAACTATGAATTTGTTA
TACAATAGACCATTGCGTTGTCTCGAAAGGACTATTGACCAAATAAATTA
TCAAAGCTTTTTCAccaaggttttgtttttgactgATTAAGAATTTTCCA
TATCAAGTTTGGAGaatttcaagcactttttttgaattttgaatccAGTC
ATTAAAATCTTAGATCAAAATTTTACTCTCTTTATAATAAGCAATCATTG
ATCCATAGGGCATACAAGGCCTCTTGTGCCAAGTCTCAAGGCCTTCCATT
CACATTGGCATTAGAGTGGTCACCAAAATTGTGGAAACTCATTTCTAATC
TGATAAAAGACCAGTGaccaaagtgcttggaattttgcctgaaaatgcta
aaaatacaAATACACCTTTCCCCTAATTCGAAAAACAGATGCGCACActt
tattttgatgctctccactgTTTGGACTCTGGAGGAAAACGAACCCGTTT
TTGCTTGCatttccttagggaaagtttttttttttgcttttctaAAGCTC
TGTTGATCAAAATTCCCTCAAGATATAGTATGTTATAGTATGTTCTTTCT
ATTCATGAACCctgaaaattttttgccaaCTAAAGATTggtatcaaaagt
tagaagctgaaaactcacttttagtcccgctgctgagatcgaaaaaagtg
gctagaaaacgatTTTCGTGACAAAAAGGTGTTTAATTTTGcataaatta
atgcagattgtggggaaattccctgttttccatcagtttttgaccacaaa
taggcccataacttttgatctagagaagttgggactttggtgtaatcaat
tttttggtcagtttgaagagctctatcatgtgatataggtcttttttgga
cctaccccggtggggtggaggtcctataaattaacccatgttcgttcgtt
cgttagtgtgttagttaccagcttttctcgagattggttNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
TCTCGAGAttggttcattagttttttctgatttttggcacaaaggtgcat
gaccataaaccctcgaatgtgacggagcccgattttcgaaaaaaattttt
tttgggcaaatttgggccaaaaaacggcttaaaagcgggttttttggact
ttgtgaaaaattggatcattaattttttctgatttttagcatgaaagtag
ggtacaatcatagttaaagcatggctcaagcagatttttgcaaaaaaatt
tttttggctcaaaaatcgcatttttatctataagaaccacttttaataag
aaaacatcaatgttcttagccatattattattattattattattattttt
attagtttttttacgatgaaaatgtcacggtggagggtaatgatttgagt
tttctgtaaacacttattattttttggctgaaaaacgaatctttatctat
aagaatcactatttacgagcatatatcaatgttatcagccaaattgtttt
attattattttttttaacagaagaaaatgtcacggtagagtgcgacggtt
tgagttttctggaaaccttatttattaagctgtgtatttttctgatagtg
gtttttataaagaaaagcgcttaatagcttttttatttctttttcaaaaa
tctttttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtattttttttgtattttgac
cagttatgtcttatgtgtttcaatgttcactgattagtttgataaccagg
taggtccataaaagtatcgcttgtttattttgaagaccccccaaaaatca
atgaatttccaggccttgcaattttgccttgaaacgcaaaaaatcgccaa
atactcgttacttgcacgataatattgtagaaactttttgattttggaat
attctaattcgcgagtttccaccaaaaaaagatgtgtgtcacgaaacGAA
ATATTTatcgacctcagcagcgggactatttCCCTAACCTcttgcaggca
aaaacgcgtttgTTTACCtctcaaacaattttatacatgacggtggagcg
cacattttcctgGGCCATTTCTcagaagtttgaattacgggaaaggtgta
ttcattGTGCCAGATTTTCAGACATTAAAGCAACCAACTATAATATTTTA
ATTGTTATCACGTTCGTTATAATAGCCACTCACCCTTAGCAAACCTATTT
TCTATGAGTCCTGGTTGAGTTATTGTTTGAAGTTATTGCACATTTGAATG
AATTCATAACATTGAAAGATGAATTATGAATCTATGTTATTCATCTACGT
CTCTTTTTGTTGTACAGGCCAGAAGAGTAAGCAAACCAGGATGTGAAGGA
AAAATCATTGTCTGTGTTGGATCAATTACTGATGACCTAAGATTGACAAC
TGTACCCAAATTAAAGGTATTCAGAGGTCTTGTTTTAGTATACAAAACAC
CTGATGTTTTCACTCAATTATAAGTATTTCTGGTGCACtaataaatttta
caaattttgattgtttttgttttattatttcaaGGTTTGTGCTCTGAGAT
TCACTGAAGGAGCAAGAACAAGAATTACAAAAGCTGGTGGTGAATGCATC
ACCTTCGATCAATTGGCCCTCAAAGCTCCAACTGGCAAAGGCACTCTTTT
AATCCAAGGCCCAAGAAACTCTCGTGAATCATGCAGGCATTTTGGACGTG
CTCCAGGTGTTCCCCACAGCTCTACCAAGTATGTATGCGTTTTAAAACAG
GCCATTTTCTCCAGCTCATTTCAAGTTAAATTTGTCGTTTGTCGGAAAAT
AAAGAATCTCAGtatatttttttcatgtttgaaaCTTAAATGAGGTCTCC
TGCCCctaatatataatatattaaTGAGCTCAGGTTCAGGATGGACTTTA
AGTGAAAGTTGAAGGCATTTTTTAAAGCTTCTCATGCTTATTGGAATAAT
TTAGTGAGATTCATTTTTTTTGTGGTGATTGAATTTCGTGAAAATAGGTC
CCAATAGAAAAGGTTTTTATccaagaaaatttttaattaaatttcaaaGA
ATAGTATGGTAGTAAAATAGCAAAAGTAgaacaaaattgtgaaaatatta
tCACACAATAAGAGTCAACCAGAAAATTTAATCCCATTAAATTAGATAAT
TTTCTAACTTGGACATCAAGAGTGAATTCTCTAAACTTGAATGTTAGaac
attgaaaagaaatttgtccaaaaaagggcaaaaacgtaaaaattaaaacc
tgtgaaatctaattttaacaattttttttttcaaccgcAAATATTAGCTT
CCGTAGAAATTAGGTCCAATAAGGTACCCTTTACCTTGTAGGAAGNTTTT
TTCAACTGCAAATATTAGCTTCCGTAGAAATTAGATCCAATAAGGTACCC
TTGTAGGAAAAGCTCACAGTACCCATGTTGCAGTTTTCATGGTTGGAATG
ATTGATTCTCTTATTGAAAGCAATCATTTCACTTCTGGATTCCAAAATCT
TTCCCTACATTTTTGCTTTAATGCTATTGCCTGATTGTGATGTatagttt
gttttgttcttCATGATTTGATTTGTGTCTCAAGAGCTCCAATTTTATGC
TGTATGTACAAAATGATGAGAATTTTCACGACGGTCTTCATAATTACGAT
GTTGATAAATGTGAAAACTGATTGCATTGTAATTTTCTCTTCTGTGACAA
TTAAAATTTGATTGAGAGCTTAAGTTTTCACTCAACATAAGAGTATCTAT
CTGGAGTCGCTTCCAAGATAGCTCTGCTCGTGTGACAAGGAGCCTAGAAC
CTTTTCTCATTGAGGTATATTCCAGTTACAGTGTTGGAGACTAATTCAGC
TCATTGTTTTGCTTAATGCTGAACTTTTGATGCAGAGTTTGGCATATTCC
ATAAACTTTTTGTAGATACTATGTATCGATTATCATCAAGATAAACCATG
CTAAAAACATCTTCAATATAAagtttttctcttattttcaaaattatttt
gtttacgttttcttGATTATTTCAAGTGATTTCCATATTATGAGAATTTT
CACGACGGTCTTCATAAAAACGAGGTTGACAAATGTGAAAACTgatgaat
ttcttttgatatacaATTTCTATAGTTGGggtctttatttttctttctgt
tcaCCAACATAGAGTATCTATCTGGAGTCGCTTCCAAGATAGCTCTGCTC
GTGTGACAAGGAGCCTAGAACCTTTGTTCATTGAGGTATATTCCAGTCAC
AGTGTTGGATATAAATTCAGCTCATTGTTTTGTGTCATGCTTAACTTTTG
ATGCAGAATTTGGCATATTCCATAAACTTTTTGTAGATACTATGTATCAA
TTACCATCAAGATAAACCATGCTAAAAACATTTCATTATAAGGAGGTATT
TTGTTTGACATTCTAATTTGGTTGGCAGTTTTAGAGTGATCTTCCGATGA
TGAGAATTTTCACGACGGTCTTCATAAAAACGAGGTTGACAAATGTGAAA
ACTGATGGATTTCTTTTGATATACATGTTCTATAGTTGGggtctttattt
tttttatacaccttaacttgttcttagcatttttgccgttgaagccttat
gttcttgtaaagtttgttcttataaaaaagtgtaccGACATAGAGTATCT
ATCTGGAGTCGCTTCCAAGATAGCTCTGCTCGTGTGACAAGGAGCCTAGA
ACCTTTCCTCATTGAGGTATATTCCAGTCACAGTGTTGGATATAAATTCA
GCTCATTGTTTTGCTTAATGCTTAACATTTGATGCAGAGTTTGGCATATT
CCATAAACTTTTTGTAGATACTATGTATCAATTACCATTAAGATAAACCa
tgccaaaaacatttcttGAATAAATAATTACATGATTGTTTGATGTTCAG
TCCAAATTCGTTACATTTTACCTCTTTGCTTTCATTTGCATTCTTTGTCG
TTGGGCTTCAGAAATGAGGAGAACTTCAACTGAAATTAATTTTATGTTGA
CTAATTATCTCGTTAAACTGATCTGAAGTCTGTCAATTTTTGAATTATCC
CAAAGTCTCTCAAAACTTAAAGTTGAAACCATTTTTATGATAcacctttt
aaaattttgagaagaTGNtgaagccttatgttcttgcaaagtttgttttt
ataaaaagtaccGACATAGAGTATCTATCTGGAGTCGCTTCCGAGATAGC
TCTGCTCGTGTGACAAGGAGCCTAGAACCTTTGTTCATTGAGGTATATTC
CAGTCACAGTGTTGGATATAAACTCAGctcatttttttgcttaatGCTCA
ACTTTTGATGTAGAGTTTGGCATATTCCATAAACTTTTTGTAGATACTAT
GTATCAATTACCATTAAGATAAACCatgccaaaaacatttcttGAATGAA
TAATTACATGATTGTTTGATGTTCAGTCCAGATTCGTCATATTTTACCTC
TTTGCTTTCATTTACATTCTTTGTCGTTGGGCTTCAGAAATGAGGAGAAC
TTCAACTGAAACTAATTTTATGTTGACTAATTATCTCGTTAAACTGATCT
GAAGTCTGTCAATTTTTGAATTATCCCAAAGTTGAAACCATTTTTATGAT
AcaccttttaaaattttgagaagaTGTTATAAAAAATATACGATGCTTGC
TTTCAGCTTGTCTTGAAATGAGGAGAATTTTAACTGAAAATTTATGAAGA
TTTTATATCTCGTTAAACTGATCAAGAACAGCtgattattttatttatgt
tttatatgctttttcttttcttagctCTTTTACTTAGAAGAATTATTTTC
GTGCTCTAAGTAATCCCGATAAATTGtttcccgaaaataatccgaaatcg
gaattaaaaAACTTAAGGTTCAGTTCAAGTTAACCTTTGCATAATACAAA
GCCGTTTTCTATTAATTTTATTACTTCGTTTCAATTCTTGTTCAAATTCC
TTCTGAATCTAAACATGATCAATTTATCTTTTCAGGCCATTTGTTCGAGC
AAAGGGACGCAAATTCGAAAAGGCCCGTGGTCGTCGTGCAAGTCGTGGTT
ACAAAGTGTAAAATTCTTGGctgtaataaaaatgatggttaTCACAAtca
atgtttcttttctttccttATTAATATTCTTGCGATCTTTGACATCGAAT
TATGTCCATTTCTAGCTGAAATCTGCTTTTCGGAGGTCCTCTAattaagg
gcagaaagtttgagaccgaaaagtcgcgaaatttcgcggatttaagtttc
gggtttttttcttttttaagaaaatt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045644-exon-scaffold_100-1491911889:132041..132371 | TCONS_00045644-exon-scaffold_100-1491911889:132041..132371 | Clytia hemisphaerica | exon |
| TCONS_00045644-exon-scaffold_100-1510915933:132041..132371 | TCONS_00045644-exon-scaffold_100-1510915933:132041..132371 | Clytia hemisphaerica | exon |
| TCONS_00045644-exon-scaffold_100-1575043694:132041..132371 | TCONS_00045644-exon-scaffold_100-1575043694:132041..132371 | Clytia hemisphaerica | exon |
| TCONS_00045644-exon-scaffold_100-1491911889:133091..133132 | TCONS_00045644-exon-scaffold_100-1491911889:133091..133132 | Clytia hemisphaerica | exon |
| TCONS_00045644-exon-scaffold_100-1510915933:133091..133132 | TCONS_00045644-exon-scaffold_100-1510915933:133091..133132 | Clytia hemisphaerica | exon |
| TCONS_00045644-exon-scaffold_100-1575043694:133091..133132 | TCONS_00045644-exon-scaffold_100-1575043694:133091..133132 | Clytia hemisphaerica | exon |
| TCONS_00045644-exon-scaffold_100-1491911889:133409..133516 | TCONS_00045644-exon-scaffold_100-1491911889:133409..133516 | Clytia hemisphaerica | exon |
| TCONS_00045644-exon-scaffold_100-1510915933:133409..133516 | TCONS_00045644-exon-scaffold_100-1510915933:133409..133516 | Clytia hemisphaerica | exon |
| TCONS_00045644-exon-scaffold_100-1575043694:133409..133516 | TCONS_00045644-exon-scaffold_100-1575043694:133409..133516 | Clytia hemisphaerica | exon |
| TCONS_00045644-exon-scaffold_100-1491911889:136208..136306 | TCONS_00045644-exon-scaffold_100-1491911889:136208..136306 | Clytia hemisphaerica | exon |
| TCONS_00045644-exon-scaffold_100-1510915933:136208..136306 | TCONS_00045644-exon-scaffold_100-1510915933:136208..136306 | Clytia hemisphaerica | exon |
| TCONS_00045644-exon-scaffold_100-1575043694:136208..136306 | TCONS_00045644-exon-scaffold_100-1575043694:136208..136306 | Clytia hemisphaerica | exon |
| TCONS_00045644-exon-scaffold_100-1491911889:136425..136618 | TCONS_00045644-exon-scaffold_100-1491911889:136425..136618 | Clytia hemisphaerica | exon |
| TCONS_00045644-exon-scaffold_100-1510915933:136425..136618 | TCONS_00045644-exon-scaffold_100-1510915933:136425..136618 | Clytia hemisphaerica | exon |
| TCONS_00045644-exon-scaffold_100-1575043694:136425..136618 | TCONS_00045644-exon-scaffold_100-1575043694:136425..136618 | Clytia hemisphaerica | exon |
| TCONS_00045644-exon-scaffold_100-1491911889:139876..140166 | TCONS_00045644-exon-scaffold_100-1491911889:139876..140166 | Clytia hemisphaerica | exon |
| TCONS_00045644-exon-scaffold_100-1510915933:139876..140166 | TCONS_00045644-exon-scaffold_100-1510915933:139876..140166 | Clytia hemisphaerica | exon |
| TCONS_00045644-exon-scaffold_100-1575043694:139876..140166 | TCONS_00045644-exon-scaffold_100-1575043694:139876..140166 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_100 | supercontig | scaffold_100:132041..140166 + |
Blast
BLAST of TCONS_00045644 vs. Swiss-Prot (Human)
Match: RL18 (60S ribosomal protein L18 OS=Homo sapiens GN=RPL18 PE=1 SV=2) HSP 1 Score: 242.662 bits (618), Expect = 1.312e-78 Identity = 127/186 (68.28%), Postives = 152/186 (81.72%), Query Frame = 2
Query: 287 GIDLDHRKDKKKSRKAPVSQDPYIRLLVKLYRFLARRTNSKFNEVILKRLFMSRINRPPLSIARIARRVSKPGCEGKIIVCVGSITDDLRLTTVPKLKVCALRFTEGARTRITKAGGECITFDQLALKAPTGKGTLLIQGPRNSRESCRHFGRAPGVPHSSTKPFVRAKGRKFEKARGRRASRGYK 844
G+D+ H KD+K RK P SQD Y+RLLVKLYRFLARRTNS FN+V+LKRLFMSR NRPPLS++R+ R++ PG E K V VG+ITDD+R+ VPKLKVCALR T AR+RI +AGG+ +TFDQLAL +P G GT+L+ GPR RE RHFG+APG PHS TKP+VR+KGRKFE+ARGRRASRGYK
Sbjct: 2 GVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTFDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARGRRASRGYK 187
The following BLAST results are available for this feature:
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