TCONS_00045640 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045640
Unique NameTCONS_00045640
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length936

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045640 ID=TCONS_00045640|Name=TCONS_00045640|organism=Clytia hemisphaerica|type=transcript|length=936bp
TGATGTCTGTGTCCTTTCATCAAGACCTTATGGAACAAGAGCTGTTTTGA
AATTTGCTCACCATACTGGAGCTACTCCAATCGCTGGACGTTTCACACCA
GGAACATTCACCAATCAAATCCAGAAAGCTTTCCGTGAACCACGACTTTT
GGTTGTGACAGATCCCCAATTTGACCATCAATCCATCACTGAATCATCTT
ATGTCAACATTCCAGTCATTGCGCTTTGCAACACTGACTCACCTTCACGA
TTTGTTGATATTGCTATCCCATGTAACAACCGTGGTGTGCAAGCTATTGG
CACCATGTGGTGGATGCTTGCAAGAGAGGTCTTATTCTTGCGTGGAATCA
TCTCTCGCAAAACTCCTTGGGACGTTATGCCTGATTTATACTTCTACCGT
GAACCAGAAGATATTGAAAAGGAAGAACAAGCTGCTGCTCTTGCTGCTGC
CAAACCAGAAGAAACTTATCCACAGACGACCTCATCTGACTGGGTTTCAG
CACCAGCAGCTACCGAGCAAGTTGGTGGAAGCACTGACTGGGGAGAACAA
CCAGCAACAACCACTACTGATTGGGCTTCAGAACCAGTCACTGGAAAAGT
TGAAGGATTTTCTGCAGTTAAAGAAGACGATTGGGGAGCCTCCAACTATA
AATCAGCTGGATGGGAAGCTGATACTACCAACACTACTACCACAGCTGAC
TGGGGTGCTTCGACCACTGAAGGAGATTGGGCGTGATTTTGATTCCATGA
AAAGTCTGTATTGTCGTTCATTTTTCGAAATACAAGAAATCGAAAAAACC
GAAACCATCTTTATCTGATTACTTTAATattcttacacgttttttttttt
tggacctaccccggtgggctgtaggtcctataaattaacctctgttcgtt
cgttcgtccgttcgttactagcttttctcgggattg
Run BLAST on NCBI

transcript from alignment at scaffold_100:76081..85628+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045640 ID=TCONS_00045640|Name=TCONS_00045640|organism=Clytia hemisphaerica|type=transcript|length=9548bp|location=Sequence derived from alignment at scaffold_100:76081..85628+ (Clytia hemisphaerica)
TGATGTCTGTGTCCTTTCATCAAGACCTTATGGAACAGTTAGTATTTTTC
AATGTTTCACATATATAACatgtttttttggtaatcattgCTCTCTACTG
ACTTATGATTATTTCTGATTTTCCTGCTGAAACCTACAAATTGTATGATG
AAAGTTTCAGAGGCTGCTTATGAAGTCAAGAGAATTCTATTTAACTTAGG
CGggcatcacaaataacttgtgttcgcgTCGTTTTTAGGTCTAAAAAACA
AGTCAGTCAGTCGGTCAAAAGAGTCGGAAAACTAGAAAAAACATCAGTCG
GTCGGCCGAGgcgaaaaaatattatttgtgaTGCCCGCCTTAACATTATA
CTGaaaaaattttaggaaatttttttgaccaTGGGTACATAAATCTTCCT
GTTGACTAGCCCTTTGTTAAACAGNATACGTGCACGTGAATTATTACGTC
CTTTTTCAGCCTCACTTGGCGTTTGCCTACACTGTAAGTAGAGCTCCATT
TTATATCTGTTTTTCGAGTTTACTCAATCTCAGAATGAAGTTATTTCGCC
CCAACTTTGGTAAGTCATTCAACATTGAAATGTCTGGTATTTCAGGTTGT
TCGTCGTTACATATTTTGAGCAACTTCGCATAATGTCTGAGGGAATCGAA
GCTCTCCAACTCAAAGAGGAAGACGTCACTAAATTTCTTGCTAGTGGTGC
TCACTTGGGAGCTCAAAATGTTGACCGTCACTTAGAAAGTTATGTTTACA
AAAGGAAAGCTGATGGTATCCATATTATTAACTTGAGAAAGACATGGGAG
AAACTTGTCCTTGCTGCTCGCGTCATTGCAGGAATCGAAAATCCAGCTGA
TGTCTGTGTCCTTTCATCAAGACCTTATGGAACAGTTAGTATTTTTCAAT
GTTTCACATATATAACatgtttttttggtaatcattgCCCGCCTTAACAT
TCTAGGCCGATggaatttaatgttatgtttaccGTAAGCCGCCCGGGTGT
TCAAAAACCTGCCGCatcaagttgtcattatttgccattttctcgaaaag
ttgtcattatttttcctcCCATTTGAgcagagaacaaaaattttcgaagt
tgatatcaaaacaaacagcACGTGGCTTTTTTAGATTGTTAACGACCCGA
ACAGCCCTCTAGTAGTCTTTACcgtgtgaatttaattttgtcatattgtg
gagataacattatataattctctagcgagaagaaaaatatttatctcTTT
AAGCTCGTACAAACGGGAAccaaaagaatcaataaaaacacgAGAGTTCC
GAGACACAAGAGGAGTAACTCAATGTTAGACTTCAGATTGTGTATCTAta
aggaaaaacgaaaaatctggtaaaaataaatgtttatgggaaaataacga
ataatgaataatgaaaacttggccgcattgaattctgaaaatcatcatta
cggtaaacatatcattaatttccatcagccctactgaaaaaattttagga
aatttttttgaccaTGGGTACATAAATCTTCCTGTTGACTAGCCCTTTGT
TAAACAATCAAATAACTTAAATTCCTCAAAACAAGGTTGCAAACTTATTA
GTGAGGATAAAATTGTCAATTCACTTTTATTCTAGAGAGCTGTTTTGAAA
TTTGCTCACCATACTGGAGCTACTCCAATCGCTGGACGTTTCACACCAGG
AACATTCACCAATCAAATCCAGAAAGCTTTCCGTGAACCACGACTTTTGG
TTGTGACAGATCCCCAATTTGACCATCAATCCATCACTGAATCATCTTAT
GTCAACATTCCAGTCATTGCGCTTTGCAACACTGACTCACCTTCACGATT
TGTTGATATTGCTATCCCATGTAACAACCGTGGTGTGCAAGCTATTGGCA
CCATGTGGTGGATGCTTGCAAGAGAGGTATATAAATTTTCAGTTCTTTTC
TATCCAACTATGGCTACATTactaaatctaaaaaataatatttttatttt
gatacatAAACAAAAAAGCTTGGTATGTGGCTTCTGGGCAATCTTAGAGG
CTttcatttgtaaaaaaatatttagtgtTCAGGATCTTCTCTTTCTGAAC
CTGGTGACATTAATGATGATCTAAGTTATCCCTGGCATAAGACAAAGTGT
TGAAAACGCACGTCAGACTGAAATGTCACCAGTTATTATTTCAGAAAAAT
CTGTCAGGCCTACCTATCCTTATTTACCTTAATTTTAAACATGCTTAGTA
AGATGTGTGCAATCTTGTATCCCAAATGCAATGAAAGCTGACCCTAggta
aaaaaacagtttttggcAGTTTGACATATCCTGATATTATAAATTTAGCA
GATAAGCAGGGGGTGGGATACACAcacttttttacaagaatatgTACAGA
TATGTCAACCTCGGTGTGCCCCTGGGTCGTATTATCTGCTTTTTATGTTT
TACTGTGGAAGATGATTATAATATCTCAGGCGTAAAACGTAAGTTAAGCT
TGGGATATACAATGCTGTTTATAAATGTTGGTTGATAGTTTTAAGTGTTC
TAATGGTCAGTTTATGGAATATTCATCCaaaataattcttataaaagtcG
ACTTTATTGTATTTTTCCAAGGGTCAAGGTTGAAAGTACATATTGCCTTT
GTTACTTAGGGCACTTGGTACGAAATCATGTGCGCTAAAAATGCTTAATA
TGTGTATTTTGTCGCTCTCCTACTTTTTTGTTCCTGGAAAAGCCTATCTA
AGCCATTTGTTTGCTTGAAATTGTCTGCTAAAAATTACCAATGAAGAATT
TAGTTATCCCTGTCATAAAATGAATGTTGAGGGTAAAACTCTGAGGTGTT
GTCAAATTTGAATTGAGAACAAAGACATGTCAAAATAGTTATGTTATTGA
ATTGTTCAACTCTTGATTATTTCTGATTCCCCTGAAACCTACAAATTGAA
TGATGAAAGTTTCAGAGGCTGCTTATGAAGTTGAATtgactttttcaatt
tcagatGGATGGCCTCTTTTTAgaagattttctaaaatgttttcAAGTCG
GCCTTTCAATTAACTTTTTTCTTGGGACAGGTTTAGCAACTAAGTGGAGC
AAGATTTAAGTGTTCTAATGGTCAGTTTATGGACCAATAGGctgacactg
tcctgatatgaaacttATGTAAaatgaaaacctttaaattcTTATTCAAC
CTATGTTTATTCTTCGCGGTTTTGCTTTAATTGTTAGTTTTAAGACTGCA
ATGGTTTTGCAAGCTTTCTTTCGTAGTGATAACAACCTTCTCTCAAATTT
TCTGTTTAATTAGACAAGACCAAGCTGGATAATGGAATTCTTGATATGCT
TAAGTCATTTTTTAGtggaaacacccaaaaaaaaaacaggatttGACCCC
TCTATGttaataaaaatagaaacaagGAGGTCAAAATCTGGCTTTTTTTT
GGTGTTTCCCTTAAGAAAGGTGatgtcatcttgacttacgcgtaTCAAAT
AGTTTTTTCCAGATATTCTCAATTGAACATGCTGAAACAATAACAAAGCT
TAAGCCAGGGGGGTTTgtactaaaatttcagacatgacttttagtgacgt
ggtggtattacAAAAAAGGCCTTGTGTAAGTACCatgtaccatgtgtact
aaaatcccaaattaggtggggtcttcaagaaatttaagaaaaattttagt
acatgagtactaaaaatcaccaaattttaggaaatttaactGTTAGAcaa
ttactttttattttctggtttacagaCATTTGGAGATGATATTTTAGacc
ggaggatggaaaaaaaaaaaaataaaattgctcttttcaaactttgatgt
tggaaaaaattaaaaaaaaatatgttttgagaaAACTTACATACATTAAA
GAACGTTTTTAGTAGGAAAATTGTGTTTTAGTTATTAAAGGCCTGGCTGT
TCAGTACAAGGTCGGAAGagcataaataaaatatttgtaaaatccaattt
tatttttattttatttttgcaaaaaaaacgtcggcgattccgtaaaccag
aaaataaaaagtaattgccttatTGACCAAGCATTTtagacaaaatgaaa
aaaactttctatGTAAGATTTAAACAACCCTGTGTcacaaattaagcaaa
aatttcgtcctcggtggaaaaatacccttgaatttcagccccacagggaa
aatgactttgattttatccccactcgaaatttcatgttaaaaaaattgca
ctccaaaaccaccccCACTGGGtcttttaaccttggaacaatagaatttc
tatcccattaGCATTTTAGTAggtatttttatccccactgaagaaaaagg
tcccaccggggctgtgaaacaggggtgtatttaatgttctgattttatat
actatggaataaaaaatgttttcgaagtTGAATGCCTTGTTTTTGCGAAA
AACCATGGATAACTGAATAGAAAAGAAATGCAGCAAGCTGTAAATTAGAG
GTGAAAAATAACCAATAAATCTTTGCAATAACTATAGTAGAGCAGAGCAG
AAGTGTCTTGACTGTTTCTGAGTCTTTATCTAGAATAGAGAGATAGATCA
TGTTCATTGACAGCTTAAATAACCagcattttgttgaaagtccaaAAACC
ACCACTCTCTGAACCGTACGCCAAAATAAGCCTAATTTAGGTGGTCACta
tgctaaaatgtcaaaattttagtacatgtgtactataattcaaaaatcat
caaaaaaccttttagtactcatatatgtcttggATTTTAGTACAGACCTC
CCCCCCTGCTTAAGCATCAGTGATGATCAAAGTTATCCCTGTCTAAAGAC
AAAATGTTGAGAACACACATCAGACTGAGATGCTAGATTTGCCAAATATA
TTTTGTCATCTATTTCTTGCATCACCTCCACAGATCTCTGACAAACTGGT
GATTATTTCCGTTTCCCTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTGTGTcacaaattaagc
aaaaatttcgtcctcggtggaaaaatacccttgaatttcagccccacagg
gaaattgactttgattttatccccactcgaaatttcatgttaaaaaaatt
gcactccaaaaccaccccCACTGGatcttttaaccttggaacaatagaat
ttctatcccattaGCATTTTAGTAggtatttttatccccactgaggaaaa
aggtcccaccggggctgtgaaacaggggtgtatttaatgttctgatttta
tatactatggaataaaaaatgttttcgaagtTGAATGCCTTGTTTTTGCG
AAAAACCATGGATAACTGAATAGAAAAGAAATGCAGCAAGCTGTAAATTA
GAGGTGAAAAATAACCAATAAATCTTTGCAATAACTATAGTAGAGCAGAG
CAGAAGTGTCTTGACTGTTTCTGAGTCTTTATCTAGAATAGAGAGATAGA
TCATGTTCATTGACAGCTTAAATAACCagcattttgttgaaagtccaaAA
ACCACCACTCTCTGAACCGTACGCCAAAATAAGCCTAATTTAGGTGGTCA
Ctatgctaaaatgtcaaaattttagtacatgtgtactataattcaaaaat
catcaaaaaaccttttagtactcatatatgtcttggATTTTAGTACAGAC
CTCCCCCCCTGCTTAAGCATCAGTGATGATCAAAGTTATCCCTGTCTAAA
GACAAAATGTTGAGAACACACATCAGACTGAGATGCTAGATTTGCCAAAT
ATATTTTGTCATCTATTTCTTGCATCACCTCCACAGATCTCTGACAAACT
GGTGATTACTTCCGTTTCCCTTTTGAAACTTACGGACTGAATAATGAAGG
TGtatcaggccatattttagaaagataAGGCAGTGTCCGTTGGTGGCCCT
AAAGGTcctttttccagtgttttttcactaaaaaggctgtttataccaat
attttagtaatttcaaaaTGAGCAACGTCTGATAACAGGCATGAAAAATG
GTCTGTGTGTAAAGAAGCATCAGTGATGATCAAAGTTATCCCTGTCATAA
GAGAAGTGTTGAGAACGCACGTCAGACTGAGATGCTAGATTTCCAAATTA
TGTTAACATAAGATCTCTGACAAACTGGTGGCTAACTCTGTTTCCCTTTT
GAAACTTACAAACTGAATAATGAAGGTGTATAAAGAAGCATCAGTGATGA
TCAAAGTTATCCCTGTCATAAGACTAAGTGTTGAGAACGCACGTCAGACT
GAGATGCTAGATTTCCAAATTNTAAAGAAGCATCAGTGATGATCAAAGTT
ATCCCTGTCATAAGACTAAGTGTTGAGAACGCACGTCAGACTGAGATGCT
AGATTTCCAAATTATGTTAAGAGTATGGCTTTGAAAAAAGCTCAACCCAG
AGTTTATCATCGTTCTCAAAATTGTATGGAGCTAGATGATATACTGACAT
TTCTGTCTCTTTTGAAACTGACAAATTGGATGCGGAGCATCAGTGATGAT
CAAAGTTATCCCTGTCATAaaacaaaatgttgaaaacgCACGTCAGACTG
AGATGCTTACATTCAAATGCATAGAATGAAATTCTGTTTGTTCAtccatt
tgtctttttttcttttttccttttctttttttgaacttGACAAACTAGTG
ATTATTTCTGATCCCTTTCTGAAACCTACAAATTGAATGATGAAAGTTTC
AGAGGCTGCTTATGAAGTTTGTTCAAAAGTTTCCCAATactttttcatac
aaaaatcaaagaaactGTTTGTATCCActcaataaataaattttctgcTT
TGCAGGTCTTATTCTTGCGTGGAATCATCTCTCGCAAAACTCCTTGGGAC
GTTATGCCTGATTTATACTTCTACCGTGAACCAGAAGATATTGAAAAGGA
AGAACAAGCTGCTGCTCTTGCTGCTGCCAAACCAGAAGAAACTTATCCAC
AGACGACCTCATCTGACTGGGTTTCAGCACCAGCAGCTACCGAGCAAGTT
GGTGGAAGCACTGACTGGGGAGAACAACCAGCAACAACCACTACTGATGT
AAGTGAAGCTACTTTTCNGCACCAGCAGCTACCGAGCAAGTTGGTGGAAG
CACTGACTGGGGAGAACAACCAGCAACAACCACTACTGATGTAAGTGAAG
CTACTTTTCCTTAGGTCTAAGGGCCAGTATCCACTTGTGTGCTCTGTGAT
TGCACCGTTTGGCTTTAATTCTTTTTTGTCAGAATTACATCATAGAATGA
AGTGGTGTTAAAAGTCGAtggaattgttttgtttttcttttgaccaatag
agtggaagctttgctcaaaAAATTGACTGTTAACTAGACTTTGAAATTAT
TCTGGGGGACAATTCTCAAAACATTTTGTTTGCGTTTTAAGACANTTAAC
TAGACTTTGAAATTATTCTGGGGGACAATTCTCAAAACATTTTGTTTGCG
TTTTAAGACATGATTCTTTCTATTACATTTTAGTGGGCTTCAGAACCAGT
CACTGGAAAAGTTGAAGGATTTTCTGCAGTTAAAGAAGACGATTGGGGAG
CCTCCAACTATAAATCAGCTGGATGGGAAGCTGATACTACCAACACTACT
ACCACAGCTGACTGGGGTGCTTCGACCACTGAAGGAGATTGGGCGTGATT
TTGATTCCATGAAAAGTCTGTATTGTCGTTCATTTTTCGAAATACAAGAA
ATCGAAAAAACCGAAACCATCTTTATCTGATTACTTTAATattcttacac
gttttttttttttggacctaccccggtgggctgtaggtcctataaattaa
cctctgttcgttcgttcgtccgttcgttactagcttttctcgggattg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029185XLOC_029185Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045640-exon-scaffold_100-1491911889:76081..76117TCONS_00045640-exon-scaffold_100-1491911889:76081..76117Clytia hemisphaericaexon
TCONS_00045640-exon-scaffold_100-1510915933:76081..76117TCONS_00045640-exon-scaffold_100-1510915933:76081..76117Clytia hemisphaericaexon
TCONS_00045640-exon-scaffold_100-1575043694:76081..76117TCONS_00045640-exon-scaffold_100-1575043694:76081..76117Clytia hemisphaericaexon
TCONS_00045640-exon-scaffold_100-1491911889:77716..78006TCONS_00045640-exon-scaffold_100-1491911889:77716..78006Clytia hemisphaericaexon
TCONS_00045640-exon-scaffold_100-1510915933:77716..78006TCONS_00045640-exon-scaffold_100-1510915933:77716..78006Clytia hemisphaericaexon
TCONS_00045640-exon-scaffold_100-1575043694:77716..78006TCONS_00045640-exon-scaffold_100-1575043694:77716..78006Clytia hemisphaericaexon
TCONS_00045640-exon-scaffold_100-1491911889:84586..84828TCONS_00045640-exon-scaffold_100-1491911889:84586..84828Clytia hemisphaericaexon
TCONS_00045640-exon-scaffold_100-1510915933:84586..84828TCONS_00045640-exon-scaffold_100-1510915933:84586..84828Clytia hemisphaericaexon
TCONS_00045640-exon-scaffold_100-1575043694:84586..84828TCONS_00045640-exon-scaffold_100-1575043694:84586..84828Clytia hemisphaericaexon
TCONS_00045640-exon-scaffold_100-1491911889:85264..85628TCONS_00045640-exon-scaffold_100-1491911889:85264..85628Clytia hemisphaericaexon
TCONS_00045640-exon-scaffold_100-1510915933:85264..85628TCONS_00045640-exon-scaffold_100-1510915933:85264..85628Clytia hemisphaericaexon
TCONS_00045640-exon-scaffold_100-1575043694:85264..85628TCONS_00045640-exon-scaffold_100-1575043694:85264..85628Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_100supercontigscaffold_100:76081..85628 +
Expression
No biomaterial libraries express this feature.
Blast
[Close]
BLAST of TCONS_00045640 vs. Swiss-Prot (Human)
Match: RSSA (40S ribosomal protein SA OS=Homo sapiens GN=RPSA PE=1 SV=4)

HSP 1 Score: 242.276 bits (617), Expect = 1.549e-77
Identity = 138/226 (61.06%), Postives = 157/226 (69.47%), Query Frame = 2 
Query:    2 DVCVLSSRPYGTRAVLKFAHHTGATPIAGRFTPGTFTNQIQKAFREPRLLVVTDPQFDHQSITESSYVNIPVIALCNTDSPSRFVDIAIPCNNRGVQAIGTMWWMLAREVLFLRGIISRKTPWDVMPDLYFYREPEDIXXXXXXXXXXXXXXXX------------TYPQTTSSDW---VSAPAATEQVGGSTDWGEQPATTTTDWASEPVTGKVEGFSAVKEDDW 634
            DV V+SSR  G RAVLKFA  TGATPIAGRFTPGTFTNQIQ AFREPRLLVVTDP+ DHQ +TE+SYVN+P IALCNTDSP R+VDIAIPCNN+G  ++G MWWMLAREVL +RG ISR+ PW+VMPDLYFYR+PE+IEKEEQAAA  A   EE            T  Q   +DW   V  P+   Q   + DW  QPA  T DW++ P     E   A    DW
Sbjct:   73 DVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTATQPEVADWSEGVQVPSVPIQQFPTEDWSAQPA--TEDWSAAPTAQATEWVGATT--DW 294
The following BLAST results are available for this feature:
BLAST of TCONS_00045640 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RSSA1.549e-7761.0640S ribosomal protein SA OS=Homo sapiens GN=RPSA P... [more]
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