TCONS_00045639 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045639
Unique NameTCONS_00045639
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length515

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045639 ID=TCONS_00045639|Name=TCONS_00045639|organism=Clytia hemisphaerica|type=transcript|length=515bp
AAGATTTGGTCGACGCCCTACAACATGTGGAAATTGGGTGATCAGTGGCG
TTTCTTGTATGGGCGTGGCTTTTATTCCAACTCATGGCGTCTACAATTGG
ATTCGAGTAGCATTCGGTATGCTTGGTAAACTAAGTGTTACATTGGCTTT
CAGCGCTCTCTTTGTTTGGTCTGTCGAATTATACCCAACTGTTATCAGAT
CACAAGGAATGGGCCTGATGAACGTTGTCAGCCGCATCGGTGGCGCATAT
GCACCCTGGGTGGCTCAATATGTAGGAAACTTCAACAAATATCTCCCCTT
CTTAGTGATGGGGTCATTATCTTTAATCAGTGCTGCATTGTGCTATAAGT
TAAACGAAACGACGGGAATGGCTTTGGCTGAAACATTAGAAGATTTCAAC
CAATCAGATTCGAAGGAGAGCAAAACAATGACAACAATTATCGAGAATGA
TTTCACCAAAGAGGATGAAAAGGACCAAAAAGAAAACACTTCTGTTTGAA
GAtgatgcacataca
Run BLAST on NCBI

protein sequence of TCONS_00045639-protein

>TCONS_00045639-protein ID=TCONS_00045639-protein|Name=TCONS_00045639-protein|organism=Clytia hemisphaerica|type=polypeptide|length=165bp
RFGRRPTTCGNWVISGVSCMGVAFIPTHGVYNWIRVAFGMLGKLSVTLAF
SALFVWSVELYPTVIRSQGMGLMNVVSRIGGAYAPWVAQYVGNFNKYLPF
LVMGSLSLISAALCYKLNETTGMALAETLEDFNQSDSKESKTMTTIIEND
FTKEDEKDQKENTSV
Run BLAST on NCBI

transcript from alignment at scaffold_100:6572..9340+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045639 ID=TCONS_00045639|Name=TCONS_00045639|organism=Clytia hemisphaerica|type=transcript|length=2769bp|location=Sequence derived from alignment at scaffold_100:6572..9340+ (Clytia hemisphaerica)
AAGATTTGGTCGACGCCCTACAACATGTGGAAATTGGGTGATCAGTGGCG
TTTCTTGTATGGGCGTGGCTTTTATTCCAACTCATGGCGGTAAGTCTTCG
TTGACCAATCAGTAAAAGGGTTTTGTAAAATGGTGGATAGAATCttatgt
ggaaaccactctctGAAGAATTACTCTaatatcggccctttttacacggg
ccctaatttaacgccggcccttattatgccacagcctaattttggtccca
cgccaattagggccgttaacaacgcaaaatttgtaaaaatggctactttt
atgcttcaaattagtaaataatgactaaaatttacattaaaatttcattt
ttcaataggcttttaggttaaaattgcaaaatcttggccctttttacgcc
gccCTTTTAACGccagcccttattacgccacgagccaaaaaataacgcca
aaaagggccggtgtaaaaagggccaataagGTACTTTTCTAGAGTCNAAG
CcaaaaaataacgccaaaaaaggccggtgtaaaaagggccaataagGTAC
TTCTCTAGAGTCTATTTCTGGCAAAAGTTTGCCTTTTGATGATCTTTGAT
AAAGTCCAGTGAAGTATACTAGGAATAGGCGGATTAGACCACGTCgaacg
tacttgctctattgtctctATTTTCTAGTAGCACTTTGCATAGGTCACCA
TTTTTGAATGAAgtcttcaaaatttctttaaggtCTGGATGACAAGAATA
GTCatataaattacgttacgaacatcacttgcttcgtattcaaacaattt
tcatggtgattatatcccttgagacatttaatgatttttttatgaataga
aagtagttgtaataaaatccgcttggagttaatcaccatggcaataattt
caaaacgaggcaagtgatgttcgtgacgtaatttatgaaaaggtctatta
ttggGTGTTTCtgtaaacattacgtcattaacACCACAGTTTACTTTATA
GTCTACAATTGGATTCGAGTAGCATTCGGTATGCTTGGTAAACTAAGTGT
TACATTGGCTTTCAGCGCTCTCTTTGTTTGGTCTGTCGAATTATACCCAA
CTGTTATCAGGTAatgttacacatttttttttgctttttcattttaattt
tttgggaaactcatcctgaaatattattacagtattcttaggttatgATC
CGAACCCAAACTAAAGTCACCATGTAATACAGTCGCCAAATTTGACATAT
gtattctcttctttttttgcgTGTACTCTACTTTTAGTCTGATTAGCTTt
tgcgagaattaattttgcgttttctcgatttttgccaaaaacataACTCG
CGAAATCGCGTGGAATTGCTGACTCCCGATATTAATAGGCGAAATATTTT
GATCAGATTTACGACTTTAAATATCCTGTAAATTTGCTATTTGTGCAATT
TCAGGGTCATTTTCGACATTTTGGCGctgatttacaaaattaaaTCTACG
CGAAACCGCGGAACTATTTAAAACGCGATTCACGTAAATAAATCTCCAAA
AGTATGTCTTTGGTTCAAAATTAATATAAGTGAAAATTGCGATAAGTGAA
TCTATCTTCTAAACAACCTGCCTCTTTCAGATCACAAGGAATGGGCCTGA
TGAACGTTGTCAGCCGCATCGGTGGCGCATATGCACCCTGGGTGGCTCAA
TATGTAGGAAACTTCAACAAATATCTCCCCTTCTTAGTGATGGGGTCATT
ATCTTTAATCAGTGCTGCATTGTGCTATAAGTTAAACGAAACGACGGGAA
TGGCTTTGGCTGAAACATTAGAAGATTTCAACCAATCAGGTACATGATTA
TAATTTTCATAcacgtatttttttataagaacaaactatataagaacatg
aagcTTCGATggacaaaatgttaagaacaagttaagagcattttaaggct
ttggggacactaaaatacctaatttcttaagaaaatggacaaaaatactt
aaaaaatgggggaaaataagaacatgttaagaataattttaggcttaaaa
ctaaaaaagattaaaacaaCCGAAagcttcaaacatttttgatgttttta
taaaaaaagcgtgtatgattCGTTTTTTTAGTACATAATGATTTTTCCAA
GTCATTGCAGTAATCAATTTTTTATGGTTGAACACTTTTTTGCGAATTGA
CGGATACGTTGACGTTGATAAGTTTTGCAAAGGTAATAGCGATAGAAAAG
AGGTCTTGAATTCCCAAGCGAATTGAATGattataaaattaaattttgcc
tAACTTTCtgaagcttatttttcaactacctgaagtcctggtctttttcc
acTAGAAAcctagaaaagtggcaaaggaattttagtgcggaaatgggaat
cttatggTCAACGTGGTTTAATTCATTAAACCACGTTGGCTTTCACGAGA
GAAAGATAAACTGTACTTTTCACGTATACGTGAGTTCGATTGACAATTCC
TACATTAATAACacacatgcgtaatttgtcgttcttttaaaccacatgta
gttaattcccgtgataaacaagaAGGAATAAATTCGttggggtggtacag
tcactttcggttgGGGTtgtgtctatttttagtaatgcaagATTTTCCCC
TCTATTCACAGATTCGAAGGAGAGCAAAACAATGACAACAATTATCGAGA
ATGATTTCACCAAAGAGGATGAAAAGGACCAAAAAGAAAACACTTCTGTT
TGAAGAtgatgcacataca

Coding sequence (CDS) from alignment at scaffold_100:6572..9340+

>TCONS_00045639 ID=TCONS_00045639|Name=TCONS_00045639|organism=Clytia hemisphaerica|type=CDS|length=1992bp|location=Sequence derived from alignment at scaffold_100:6572..9340+ (Clytia hemisphaerica)
AGATTTGGTCGACGCCCTACAACATGTGGAAATTGGGTGATCAGTGGCGT
TTCTTGTATGGGCGTGGCTTTTATTCCAACTCATGGCGTCTACAATTGGA
TTCGAGTAGCATTCGGTATGCTTGGTAAACTAAGTGTTACATTGGCTTTC
AGCGCTCTCTTTGTTTGGTCTGTCGAATTATACCCAACTGTTATCAGATC
ACAAGGAATGGGCCTGATGAACGTTGTCAGCCGCATCGGTGGCGCATATG
CACCCTGGGTGGCTCAATATGTAGGAAACTTCAACAAATATCTCCCCTTC
TTAGTGATGGGGTCATTATCTTTAATCAGTGCTGCATTGTGCTATAAGTT
AAACGAAACGACGGGAATGGCTTTGGCTGAAACATTAGAAGATTTCAACC
AATCAGATTCGAAGGAGAGCAAAACAATGACAACAATTATCGAGAATGAT
TTCACCAAAGAGGATGAAAAGGACCAAAAAGAAAACACTTCTGTTTGAAG
ATTTGGTCGACGCCCTACAACATGTGGAAATTGGGTGATCAGTGGCGTTT
CTTGTATGGGCGTGGCTTTTATTCCAACTCATGGCGTCTACAATTGGATT
CGAGTAGCATTCGGTATGCTTGGTAAACTAAGTGTTACATTGGCTTTCAG
CGCTCTCTTTGTTTGGTCTGTCGAATTATACCCAACTGTTATCAGATCAC
AAGGAATGGGCCTGATGAACGTTGTCAGCCGCATCGGTGGCGCATATGCA
CCCTGGGTGGCTCAATATGTAGGAAACTTCAACAAATATCTCCCCTTCTT
AGTGATGGGGTCATTATCTTTAATCAGTGCTGCATTGTGCTATAAGTTAA
ACGAAACGACGGGAATGGCTTTGGCTGAAACATTAGAAGATTTCAACCAA
TCAGATTCGAAGGAGAGCAAAACAATGACAACAATTATCGAGAATGATTT
CACCAAAGAGGATGAAAAGGACCAAAAAGAAAACACTTCTGTTTGAAGAT
TTGGTCGACGCCCTACAACATGTGGAAATTGGGTGATCAGTGGCGTTTCT
TGTATGGGCGTGGCTTTTATTCCAACTCATGGCGTCTACAATTGGATTCG
AGTAGCATTCGGTATGCTTGGTAAACTAAGTGTTACATTGGCTTTCAGCG
CTCTCTTTGTTTGGTCTGTCGAATTATACCCAACTGTTATCAGATCACAA
GGAATGGGCCTGATGAACGTTGTCAGCCGCATCGGTGGCGCATATGCACC
CTGGGTGGCTCAATATGTAGGAAACTTCAACAAATATCTCCCCTTCTTAG
TGATGGGGTCATTATCTTTAATCAGTGCTGCATTGTGCTATAAGTTAAAC
GAAACGACGGGAATGGCTTTGGCTGAAACATTAGAAGATTTCAACCAATC
AGATTCGAAGGAGAGCAAAACAATGACAACAATTATCGAGAATGATTTCA
CCAAAGAGGATGAAAAGGACCAAAAAGAAAACACTTCTGTTTGAAGATTT
GGTCGACGCCCTACAACATGTGGAAATTGGGTGATCAGTGGCGTTTCTTG
TATGGGCGTGGCTTTTATTCCAACTCATGGCGTCTACAATTGGATTCGAG
TAGCATTCGGTATGCTTGGTAAACTAAGTGTTACATTGGCTTTCAGCGCT
CTCTTTGTTTGGTCTGTCGAATTATACCCAACTGTTATCAGATCACAAGG
AATGGGCCTGATGAACGTTGTCAGCCGCATCGGTGGCGCATATGCACCCT
GGGTGGCTCAATATGTAGGAAACTTCAACAAATATCTCCCCTTCTTAGTG
ATGGGGTCATTATCTTTAATCAGTGCTGCATTGTGCTATAAGTTAAACGA
AACGACGGGAATGGCTTTGGCTGAAACATTAGAAGATTTCAACCAATCAG
ATTCGAAGGAGAGCAAAACAATGACAACAATTATCGAGAATGATTTCACC
AAAGAGGATGAAAAGGACCAAAAAGAAAACACTTCTGTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029184XLOC_029184Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045639-exon-scaffold_100-1491911889:6572..6660TCONS_00045639-exon-scaffold_100-1491911889:6572..6660Clytia hemisphaericaexon
TCONS_00045639-exon-scaffold_100-1510915933:6572..6660TCONS_00045639-exon-scaffold_100-1510915933:6572..6660Clytia hemisphaericaexon
TCONS_00045639-exon-scaffold_100-1575043694:6572..6660TCONS_00045639-exon-scaffold_100-1575043694:6572..6660Clytia hemisphaericaexon
TCONS_00045639-exon-scaffold_100-1491911889:7573..7681TCONS_00045639-exon-scaffold_100-1491911889:7573..7681Clytia hemisphaericaexon
TCONS_00045639-exon-scaffold_100-1510915933:7573..7681TCONS_00045639-exon-scaffold_100-1510915933:7573..7681Clytia hemisphaericaexon
TCONS_00045639-exon-scaffold_100-1575043694:7573..7681TCONS_00045639-exon-scaffold_100-1575043694:7573..7681Clytia hemisphaericaexon
TCONS_00045639-exon-scaffold_100-1491911889:8202..8410TCONS_00045639-exon-scaffold_100-1491911889:8202..8410Clytia hemisphaericaexon
TCONS_00045639-exon-scaffold_100-1510915933:8202..8410TCONS_00045639-exon-scaffold_100-1510915933:8202..8410Clytia hemisphaericaexon
TCONS_00045639-exon-scaffold_100-1575043694:8202..8410TCONS_00045639-exon-scaffold_100-1575043694:8202..8410Clytia hemisphaericaexon
TCONS_00045639-exon-scaffold_100-1491911889:9233..9340TCONS_00045639-exon-scaffold_100-1491911889:9233..9340Clytia hemisphaericaexon
TCONS_00045639-exon-scaffold_100-1510915933:9233..9340TCONS_00045639-exon-scaffold_100-1510915933:9233..9340Clytia hemisphaericaexon
TCONS_00045639-exon-scaffold_100-1575043694:9233..9340TCONS_00045639-exon-scaffold_100-1575043694:9233..9340Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045639-proteinTCONS_00045639-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_100supercontigscaffold_100:6572..9340 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0.231325	0.321864	0.674407	0.731258	1.29315	1.77202	0	0	1.45178	1.19285	1.63547	2.21147	0.77193	0.444382	0.281896	0	4.5003	2.4149
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011701MFS
IPR020846MFS_dom
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016021 integral component of membrane
Blast
[Close]
BLAST of TCONS_00045639 vs. Swiss-Prot (Human)
Match: S22AD (Solute carrier family 22 member 13 OS=Homo sapiens GN=SLC22A13 PE=2 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 2.095e-24
Identity = 56/164 (34.15%), Postives = 85/164 (51.83%), Query Frame = 2 
Query:    2 RFGRRPTTCGNWVISGVSCMGVAFIPTHGVYNWIRVAFGMLGKLSVTLAFSALFVWSVELYPTVIRSQGMGLMNVVSRIGGAYAPWVAQYVGNFNKYLPFLVMGSLSLISAALCYKLNETTGMALAETLEDFNQSDSKESKTMTTIIENDFTKEDEKDQKENTS 493
            RFGR+ +  G  V+ G+ C+ + FIP       +     ++GK++   AF+  +V+S EL+PT++R  GMGL+ + SRIGG   P V   +G ++  LP L+ GSL +++  LC  L ET G  L +TL+D        S             E E + K  TS
Sbjct:  386 RFGRKWSQLGTLVLGGLMCIIIIFIPAD--LPVVVTMLAVVGKMATAAAFTISYVYSAELFPTILRQTGMGLVGIFSRIGGILTPLVI-LLGEYHAALPMLIYGSLPIVAGLLCTLLPETHGQGLKDTLQDLELGPHPRSP-------KSVPSEKETEAKGRTS 539
The following BLAST results are available for this feature:
BLAST of TCONS_00045639 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
S22AD2.095e-2434.15Solute carrier family 22 member 13 OS=Homo sapiens... [more]
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