TCONS_00045637 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045637
Unique NameTCONS_00045637
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1711

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045637 ID=TCONS_00045637|Name=TCONS_00045637|organism=Clytia hemisphaerica|type=transcript|length=1711bp
cccccggctattaggtacccgagagtatactCTTATTTTTTGCCTATATC
GGCGAcacacaaaatatttaatttaatATTTCCAATGATCAATTTTCTTT
AACCTCGTCTCTTCCTTCTCTACAATCAAACTAGCAACATCCATCAGATT
TTGACTTTGATGTATTTTAGATGATAATTCTTTGAATTCACTTTTTCTAT
CCGGTTGAACTATTTCTTTGGAATGACTTTTAACATGAGCAGTTAAACAA
CTTGCGCTGTTAAAACATTTGCCACATTTGATACATTGGAGAGGTTGTTC
TCGTTCTATTAAATGGagaagaagtttttttcgtttATGAGTCTTGATGT
GAATATTGAAAccatttttttgggaaaaacacTTACCACATTCCTTACAT
TTAAATGATTTGATTCCATTGTGTATGTTTGAATGAGGTATCAAATTACC
TCGTTGGGAAAATTGTTTACCACATTCTTTACATTTAAAAGGCTTTTCGC
CAGTATGTACTGTCATGTGATATTTCAAACTGCTTTTCCTTGGAAAACAT
TTACCACACTCCTCACATTTGAATGGTTTTTCTTCAGTGTGTATTCTTTT
ATGTTCCTTTAAAGAACCAtttgttttaaagcatttaccacattcttcac
atttGAACAGCTTTTCTTCGTTGTGTATTCTTTCATGTTTCTTTAAAGAA
CCAtttgttttaaagcatttaccacattcttcacatttGAATGCCTTGTC
TTCGGTATGTAATTTAATATGTTCCTTTAACGAACCAtttgttttaaagc
atttaccacattcttcacatttAAACAGCTTTTCTTCGTTGTGTATTCTT
TCATGTTTCTTTAAAGAACCAtttgttttaaagcatttaccacattcttc
acatttGAATGCCTTGTCTTCGGTATGTAATTTAATATGTTCCTTTAACG
AACCATTTGTTTTAAAGCAattaccacattcttcacatttAAACGGCTTA
ATGCTGCTATGTACAATAAGATGTCGTGTTAGTCCATTTTGTTTGgcaaa
acatttaccacattcttgacacttGAAAGGTTTTTCGCCAGTGTGAATTC
TAAAATGTCTCTTCAAATAACAGTAGAACTTGAAGGCTTTACCACAGACA
TTGCATTTAAAACTTTGGCCACGTCTTTTTGGTGCAATATCATTTTCCCT
TTCCCTGGTTTCTGCATTTTCTGCTTGCAAATTAGCAGCATCTGTTGTTA
AGTTTGTTGGTGGAATTATTTCATCAAGTTCAATTTTgatattgaaaaaa
gaattagATTTAAAATGGTAATCTGATACCTCTTTAGCAGGGGCCAAAGA
AGTATTTCNTAGAGGCATATGTTGTTAAGTTTGTTGGTGGAATTATTTCA
TCAAGTTCAATTTTgatattgaaaaaagaattagATTTAAAATGGTAATC
TGATACCTCTTCGACAGGGGCCAAAGAGGTATTTCCCTCTTCAATCTTCA
TCTTCAAGGGTATATCGTCTGTTTTTGAGTCAATAAATTCATGCTTTTCC
TCtccaaataaatcaaaattagcATCCTCTGGTCCAATCTTGAGTGCAAC
CGAATTCATCTCATCTTCGTTACGTTCGATTTCGTTGGATAAATCTTTGA
CTTCTTTATtcattttattagttttcttttttatttcaccGTCTTTATTT
tcctgtaaaaa
Run BLAST on NCBI

protein sequence of TCONS_00045637-protein

>TCONS_00045637-protein ID=TCONS_00045637-protein|Name=TCONS_00045637-protein|organism=Clytia hemisphaerica|type=polypeptide|length=431bp
MPLXNTSLAPAKEVSDYHFKSNSFFNIKIELDEIIPPTNLTTDAANLQAE
NAETRERENDIAPKRRGQSFKCNVCGKAFKFYCYLKRHFRIHTGEKPFKC
QECGKCFAKQNGLTRHLIVHSSIKPFKCEECGNCFKTNGSLKEHIKLHTE
DKAFKCEECGKCFKTNGSLKKHERIHNEEKLFKCEECGKCFKTNGSLKEH
IKLHTEDKAFKCEECGKCFKTNGSLKKHERIHNEEKLFKCEECGKCFKTN
GSLKEHKRIHTEEKPFKCEECGKCFPRKSSLKYHMTVHTGEKPFKCKECG
KQFSQRGNLIPHSNIHNGIKSFKCKECGKCFSQKNGFNIHIKTHKRKKLL
LHLIEREQPLQCIKCGKCFNSASCLTAHVKSHSKEIVQPDRKSEFKELSS
KIHQSQNLMDVASLIVEKEETRLKKIDHWKY
Run BLAST on NCBI

transcript from alignment at scaffold_10:318645..320355

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045637 ID=TCONS_00045637|Name=TCONS_00045637|organism=Clytia hemisphaerica|type=transcript|length=1711bp|location=Sequence derived from alignment at scaffold_10:318645..320355 (Clytia hemisphaerica)
tttttacaggaAAATAAAGACggtgaaataaaaaagaaaactaataaaat
gaATAAAGAAGTCAAAGATTTATCCAACGAAATCGAACGTAACGAAGATG
AGATGAATTCGGTTGCACTCAAGATTGGACCAGAGGATgctaattttgat
ttatttggaGAGGAAAAGCATGAATTTATTGACTCAAAAACAGACGATAT
ACCCTTGAAGATGAAGATTGAAGAGGGAAATACCTCTTTGGCCCCTGTCG
AAGAGGTATCAGATTACCATTTTAAATctaattcttttttcaatatcAAA
ATTGAACTTGATGAAATAATTCCACCAACAAACTTAACAACATATGCCTC
TANGAAATACTTCTTTGGCCCCTGCTAAAGAGGTATCAGATTACCATTTT
AAATctaattcttttttcaatatcAAAATTGAACTTGATGAAATAATTCC
ACCAACAAACTTAACAACAGATGCTGCTAATTTGCAAGCAGAAAATGCAG
AAACCAGGGAAAGGGAAAATGATATTGCACCAAAAAGACGTGGCCAAAGT
TTTAAATGCAATGTCTGTGGTAAAGCCTTCAAGTTCTACTGTTATTTGAA
GAGACATTTTAGAATTCACACTGGCGAAAAACCTTTCaagtgtcaagaat
gtggtaaatgttttgcCAAACAAAATGGACTAACACGACATCTTATTGTA
CATAGCAGCATTAAGCCGTTTaaatgtgaagaatgtggtaatTGCTTTAA
AACAAATGGTTCGTTAAAGGAACATATTAAATTACATACCGAAGACAAGG
CATTCaaatgtgaagaatgtggtaaatgctttaaaacaaaTGGTTCTTTA
AAGAAACATGAAAGAATACACAACGAAGAAAAGCTGTTTaaatgtgaaga
atgtggtaaatgctttaaaacaaaTGGTTCGTTAAAGGAACATATTAAAT
TACATACCGAAGACAAGGCATTCaaatgtgaagaatgtggtaaatgcttt
aaaacaaaTGGTTCTTTAAAGAAACATGAAAGAATACACAACGAAGAAAA
GCTGTTCaaatgtgaagaatgtggtaaatgctttaaaacaaaTGGTTCTT
TAAAGGAACATAAAAGAATACACACTGAAGAAAAACCATTCAAATGTGAG
GAGTGTGGTAAATGTTTTCCAAGGAAAAGCAGTTTGAAATATCACATGAC
AGTACATACTGGCGAAAAGCCTTTTAAATGTAAAGAATGTGGTAAACAAT
TTTCCCAACGAGGTAATTTGATACCTCATTCAAACATACACAATGGAATC
AAATCATTTAAATGTAAGGAATGTGGTAAgtgtttttcccaaaaaaatgg
TTTCAATATTCACATCAAGACTCATaaacgaaaaaaacttcttctCCATT
TAATAGAACGAGAACAACCTCTCCAATGTATCAAATGTGGCAAATGTTTT
AACAGCGCAAGTTGTTTAACTGCTCATGTTAAAAGTCATTCCAAAGAAAT
AGTTCAACCGGATAGAAAAAGTGAATTCAAAGAATTATCATCTAAAATAC
ATCAAAGTCAAAATCTGATGGATGTTGCTAGTTTGATTGTAGAGAAGGAA
GAGACGAGGTTAAAGAAAATTGATCATTGGAAATattaaattaaatattt
tgtgtgTCGCCGATATAGGCAAAAAATAAGagtatactctcgggtaccta
atagccggggg

Coding sequence (CDS) from alignment at scaffold_10:318645..320355

>TCONS_00045637 ID=TCONS_00045637|Name=TCONS_00045637|organism=Clytia hemisphaerica|type=CDS|length=1296bp|location=Sequence derived from alignment at scaffold_10:318645..320355 (Clytia hemisphaerica)
ATGCCTCTANGAAATACTTCTTTGGCCCCTGCTAAAGAGGTATCAGATTA
CCATTTTAAATctaattcttttttcaatatcAAAATTGAACTTGATGAAA
TAATTCCACCAACAAACTTAACAACAGATGCTGCTAATTTGCAAGCAGAA
AATGCAGAAACCAGGGAAAGGGAAAATGATATTGCACCAAAAAGACGTGG
CCAAAGTTTTAAATGCAATGTCTGTGGTAAAGCCTTCAAGTTCTACTGTT
ATTTGAAGAGACATTTTAGAATTCACACTGGCGAAAAACCTTTCaagtgt
caagaatgtggtaaatgttttgcCAAACAAAATGGACTAACACGACATCT
TATTGTACATAGCAGCATTAAGCCGTTTaaatgtgaagaatgtggtaatT
GCTTTAAAACAAATGGTTCGTTAAAGGAACATATTAAATTACATACCGAA
GACAAGGCATTCaaatgtgaagaatgtggtaaatgctttaaaacaaaTGG
TTCTTTAAAGAAACATGAAAGAATACACAACGAAGAAAAGCTGTTTaaat
gtgaagaatgtggtaaatgctttaaaacaaaTGGTTCGTTAAAGGAACAT
ATTAAATTACATACCGAAGACAAGGCATTCaaatgtgaagaatgtggtaa
atgctttaaaacaaaTGGTTCTTTAAAGAAACATGAAAGAATACACAACG
AAGAAAAGCTGTTCaaatgtgaagaatgtggtaaatgctttaaaacaaaT
GGTTCTTTAAAGGAACATAAAAGAATACACACTGAAGAAAAACCATTCAA
ATGTGAGGAGTGTGGTAAATGTTTTCCAAGGAAAAGCAGTTTGAAATATC
ACATGACAGTACATACTGGCGAAAAGCCTTTTAAATGTAAAGAATGTGGT
AAACAATTTTCCCAACGAGGTAATTTGATACCTCATTCAAACATACACAA
TGGAATCAAATCATTTAAATGTAAGGAATGTGGTAAgtgtttttcccaaa
aaaatggTTTCAATATTCACATCAAGACTCATaaacgaaaaaaacttctt
ctCCATTTAATAGAACGAGAACAACCTCTCCAATGTATCAAATGTGGCAA
ATGTTTTAACAGCGCAAGTTGTTTAACTGCTCATGTTAAAAGTCATTCCA
AAGAAATAGTTCAACCGGATAGAAAAAGTGAATTCAAAGAATTATCATCT
AAAATACATCAAAGTCAAAATCTGATGGATGTTGCTAGTTTGATTGTAGA
GAAGGAAGAGACGAGGTTAAAGAAAATTGATCATTGGAAATattaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029182XLOC_029182Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045637-proteinTCONS_00045637-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045637-exon-scaffold_10-1491911889:318645..320355TCONS_00045637-exon-scaffold_10-1491911889:318645..320355Clytia hemisphaericaexon
TCONS_00045637-exon-scaffold_10-1510915933:318645..320355TCONS_00045637-exon-scaffold_10-1510915933:318645..320355Clytia hemisphaericaexon
TCONS_00045637-exon-scaffold_10-1575043694:318645..320355TCONS_00045637-exon-scaffold_10-1575043694:318645..320355Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:318645..320355 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.34716	0.286973	0.261489	0.215341	0	0	0.0303677	0	0	0.0493096	0.0478611	0.062924	0.0628366	0.0174519	0.0268248	0.108904	0.125292	0.0545233	0	0	0.122508	0.0668359	0.112794	0.14862	0.532562	0.769532	0.129553	0.0345655	0.13495	0.107308
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
[Close]
BLAST of TCONS_00045637 vs. Swiss-Prot (Human)
Match: ZN626 (Zinc finger protein 626 OS=Homo sapiens GN=ZNF626 PE=2 SV=2)

HSP 1 Score: 299.286 bits (765), Expect = 2.815e-93
Identity = 169/367 (46.05%), Postives = 226/367 (61.58%), Query Frame = -2 
Query:   91 KRRGQS----FKCNVCGKAFKFYCYLKRHFRIHTGEKPFKCQECGKCFAKQNGLTRHLIVHSSIKPFKCEECGNCFKTNGSLKEHIKLHTEDKAFKCEECGKCFKTNGSLKKHERIHNEEKLFKCEECGKCFKTNGSLKEHIKLHTEDKAFKCEECGKCFKTNGSLKKHERIHNEEKLFKCEECGKCFKTNGSLKEHKRIHTEEKPFKCEECGKCFPRKSSLKYHMTVHTGEKPFKCKECGKQFSQRGNLIPHSNIHNGIKSFKCKECGKCFSQKNGFNXXXXXXXXXXXXXXXIEREQPLQCIKCGKCFNSASCLTAHVKSHSKEIVQPDRKSEFKELSSKIHQSQNLMDVASLIVEKEETRLKKI 1179
            ++RG +    FK   CGKAFK +  L  H +IHTG KP+KC+ECGK F     LTRH  +H+  KP+KCEECG  FK + +L  H + HT +K +KC++CGK F ++ +L KHE IH E+K +KCEECGK F  + +L  H  +HT +K +KCEEC K FK + +L  H+RIH E+K +KCEECGK FK + +L  HKRIHT EKP+KCEECGK F R S L  H  +HTGEKP+KC+ECGK F    NL  H  IH G + +KC+ECGK F+Q +    H + H            E+  +C +CGK F  +S LT H K H+ E     R  + +E     +QS  L     +I+E+  T +K +
Sbjct:  163 QKRGHTGKKPFKYIECGKAFKQFSTLTTHKKIHTGGKPYKCEECGKAFNHSCSLTRHKKIHTGEKPYKCEECGKAFKHSSTLTTHKRNHTGEKPYKCDKCGKAFMSSSTLSKHEIIHTEKKPYKCEECGKAFNRSSTLTTHKIIHTGEKPYKCEECDKAFKYSYTLTTHKRIHTEDKPYKCEECGKAFKYSSTLTTHKRIHTGEKPYKCEECGKAFKRSSDLTTHKIIHTGEKPYKCEECGKAFKYSSNLTTHKKIHTGERPYKCEECGKAFNQSSILTTHRRIHTG----------EKFYKCEECGKAFKCSSNLTTHKKIHTGE-----RPYKCEECGKAFNQSSILTTHERIILERNSTNVKNV 514

HSP 2 Score: 230.72 bits (587), Expect = 1.972e-67
Identity = 136/307 (44.30%), Postives = 176/307 (57.33%), Query Frame = -2 
Query:  214 FAKQNGLTRHLIVHSSIKPFKCEECGNCFKTNGSLKEHIKLHTEDKAFKCEECGKCFKTNGSLKKHERIHNEEKLFKCEECGKCFKTNGSLKEHIKLHTEDKAFKCEECGKCFKTNGSLKKHERIHNEEKLFKCEECG----------------------------KCFKTNGSLKEHKRIHTEEKPFKCEECGKCFPRKSSLKYHMTVHTGEKPFKCKECGKQFSQRGNLIPHSNIHNGIKSFKCKECGKCFSQKNGFNXXXXXXXXXXXXXXXIEREQPLQCIKCGKCFNSASCLTAHVKSHSKE 1050
            F   NG  R    H+  KPFK  ECG  FK   +L  H K+HT  K +KCEECGK F  + SL +H++IH  EK +KCEECGK FK + +L  H + HT +K +KC++CGK F ++ +L KHE IH E+K +KCEECG                            K FK + +L  HKRIHTE+KP+KCEECGK F   S+L  H  +HTGEKP+KC+ECGK F +  +L  H  IH G K +KC+ECGK F   +    H K H            E+P +C +CGK FN +S LT H + H+ E
Sbjct:  157 FPNSNGQKR---GHTGKKPFKYIECGKAFKQFSTLTTHKKIHTGGKPYKCEECGKAFNHSCSLTRHKKIHTGEKPYKCEECGKAFKHSSTLTTHKRNHTGEKPYKCDKCGKAFMSSSTLSKHEIIHTEKKPYKCEECGKAFNRSSTLTTHKIIHTGEKPYKCEECDKAFKYSYTLTTHKRIHTEDKPYKCEECGKAFKYSSTLTTHKRIHTGEKPYKCEECGKAFKRSSDLTTHKIIHTGEKPYKCEECGKAFKYSSNLTTHKKIHTG----------ERPYKCEECGKAFNQSSILTTHRRIHTGE 450
The following BLAST results are available for this feature:
BLAST of TCONS_00045637 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZN6262.815e-9346.05Zinc finger protein 626 OS=Homo sapiens GN=ZNF626 ... [more]
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