TCONS_00045636 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045636
Unique NameTCONS_00045636
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length297

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045636 ID=TCONS_00045636|Name=TCONS_00045636|organism=Clytia hemisphaerica|type=transcript|length=297bp
TTTAAAGAAACTCCAAAGATTCTCCCTCTCGTCACTCTCAATGTCATTAC
TGCCAGGCTGCTGTCTGACAGCCCAACCCTCTTCAACAGACTCACTGCTA
CAAAAAACAATCTGTCCTGACTGTCAGCATGTAACGTACTNGTCATTACT
CCCAGGCTGCTGTCTGACAGCCCAACCCTCTTCAACAGACTCACTGCTAC
AAAAAACAATCTGTCCTGACTGTCAGCATGTAACGTACTACCAGCCAAGC
ACAGGAAAATTACACGTACGCATAGGAAATTAAATGGATATACCTTT
Run BLAST on NCBI

transcript from alignment at scaffold_10:313993..314289

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045636 ID=TCONS_00045636|Name=TCONS_00045636|organism=Clytia hemisphaerica|type=transcript|length=297bp|location=Sequence derived from alignment at scaffold_10:313993..314289 (Clytia hemisphaerica)
AAAGGTATATCCATTTAATTTCCTATGCGTACGTGTAATTTTCCTGTGCT
TGGCTGGTAGTACGTTACATGCTGACAGTCAGGACAGATTGTTTTTTGTA
GCAGTGAGTCTGTTGAAGAGGGTTGGGCTGTCAGACAGCAGCCTGGGAGT
AATGACNAGTACGTTACATGCTGACAGTCAGGACAGATTGTTTTTTGTAG
CAGTGAGTCTGTTGAAGAGGGTTGGGCTGTCAGACAGCAGCCTGGCAGTA
ATGACATTGAGAGTGACGAGAGGGAGAATCTTTGGAGTTTCTTTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029181XLOC_029181Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045636-exon-scaffold_10-1491911889:313993..314289TCONS_00045636-exon-scaffold_10-1491911889:313993..314289Clytia hemisphaericaexon
TCONS_00045636-exon-scaffold_10-1510915933:313993..314289TCONS_00045636-exon-scaffold_10-1510915933:313993..314289Clytia hemisphaericaexon
TCONS_00045636-exon-scaffold_10-1575043694:313993..314289TCONS_00045636-exon-scaffold_10-1575043694:313993..314289Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:313993..314289 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.852162	0.999439	0.455592	2.47994	9.75324	5.39644	5.53379	6.5473	0.891886	4.02081	0.950538	1.3399	0.839686	1.66748	1.67279	3.49864	4.09917	2.90041	0	0	0.459866	2.7293	0.653578	0.693456	4.21013	3.59288	1.73318	2.10495	2.23304	1.60053
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045636 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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