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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045633 ID=TCONS_00045633|Name=TCONS_00045633|organism=Clytia hemisphaerica|type=transcript|length=1104bp gaaacatagtaatttcgattcccctaccccttagctttccaaaaatgtat aacaagtgcttctaataaaacagtcgagcgattttacaaaatgccctcta ctaataCTTGATTTATAATTACAATTTATCATACTAAgtataattcaatt tttttatatacaaataACTATTTTTGCCTTATTATCGTTTAGTTTGAAGA ATCTATGCCTCGCGAAATTAACGAAATTTATAATATATTTGTTACCTTTT TCGAAatatgattttaattttgggAGCATTCAAAGATACATTTACCATTG AGAGTAGCCTGGACAGCAAAAGTACCTACGATTTTTTAACTTGACGTATC TTACCGAAACTCAGGGTTTGAAATCATTGAGTTGACAAAGGCTGCATTTT GGTTTCGAcgttgaaaaatcaaagaatgTTTTACATCTTCCATATCCAGG CTACTTCGAAAGTCTTGAATAACTATAATCTAAATcacctttttaaaatt ttcaaattttaagtcTGTGTAAATTAGGTAGTGAATCAGATAAATTGTTC GTTTTGGTCATTATCATTTTTACCGTAGACTATAACTCTTCGAAATcgtg taaattttcttttagctTTAGTACCACGGCACAACAACCATTTCCTAAAC TTATGATCTTGCGACACGTAAATCAAACAATTCACAGCATTATTGATGTA AAACAGGAATGTAGCTATTTGAATGGCATAAATCAAAGCTCTGTTTCGTT TATTTCCACCCACCGCCCATCCAATGGCGTTTAAAGTGACACTCATCAGA CGCCCGGGCGTGACACATACAGCGAAAACGAGGACGAGGCGTTTCAATGT TTCCAGtgcaattttgttttgtttttgtcttaTATGGTTGTCACACATCC AAATTGACCTCTCCTCAAGATGAAATCGGATTCGCTGGTAACACCATAAC ATAAACCTGATCGGGATAATGCATTCAAATAACAGCAATACTATATGGAA ACCGAATAAAACCCGATCGGTTAACATTTGAGGGTTGATTATCTCCAAAA TGCCCTCGACAGCAAAAGGTGAACACGAAATCCAAAATCCGAAACAAATC CAAC Run BLAST on NCBI protein sequence of TCONS_00045633-protein >TCONS_00045633-protein ID=TCONS_00045633-protein|Name=TCONS_00045633-protein|organism=Clytia hemisphaerica|type=polypeptide|length=188bp
WICFGFWISCSPFAVEGILEIINPQMLTDRVLFGFHIVLLLFECIIPIRF MLWCYQRIRFHLEERSIWMCDNHIRQKQNKIALETLKRLVLVFAVCVTPG RLMSVTLNAIGWAVGGNKRNRALIYAIQIATFLFYINNAVNCLIYVSQDH KFRKWLLCRGTKAKRKFTRFRRVIVYGKNDNDQNEQFI Run BLAST on NCBI transcript from alignment at scaffold_10:112097..113200 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045633 ID=TCONS_00045633|Name=TCONS_00045633|organism=Clytia hemisphaerica|type=transcript|length=1104bp|location=Sequence derived from alignment at scaffold_10:112097..113200 (Clytia hemisphaerica) GTTGGATTTGTTTCGGATTTTGGATTTCGTGTTCACCTTTTGCTGTCGAG
GGCATTTTGGAGATAATCAACCCTCAAATGTTAACCGATCGGGTTTTATT
CGGTTTCCATATAGTATTGCTGTTATTTGAATGCATTATCCCGATCAGGT
TTATGTTATGGTGTTACCAGCGAATCCGATTTCATCTTGAGGAGAGGTCA
ATTTGGATGTGTGACAACCATAtaagacaaaaacaaaacaaaattgcaCT
GGAAACATTGAAACGCCTCGTCCTCGTTTTCGCTGTATGTGTCACGCCCG
GGCGTCTGATGAGTGTCACTTTAAACGCCATTGGATGGGCGGTGGGTGGA
AATAAACGAAACAGAGCTTTGATTTATGCCATTCAAATAGCTACATTCCT
GTTTTACATCAATAATGCTGTGAATTGTTTGATTTACGTGTCGCAAGATC
ATAAGTTTAGGAAATGGTTGTTGTGCCGTGGTACTAAagctaaaagaaaa
tttacacgATTTCGAAGAGTTATAGTCTACGGTAAAAATGATAATGACCA
AAACGAACAATTTATCTGATTCACTACCTAATTTACACAgacttaaaatt
tgaaaattttaaaaaggtgATTTAGATTATAGTTATTCAAGACTTTCGAA
GTAGCCTGGATATGGAAGATGTAAAAcattctttgatttttcaacgTCGA
AACCAAAATGCAGCCTTTGTCAACTCAATGATTTCAAACCCTGAGTTTCG
GTAAGATACGTCAAGTTAAAAAATCGTAGGTACTTTTGCTGTCCAGGCTA
CTCTCAATGGTAAATGTATCTTTGAATGCTcccaaaattaaaatcatatT
TCGAAAAAGGTAACAAATATATTATAAATTTCGTTAATTTCGCGAGGCAT
AGATTCTTCAAACTAAACGATAATAAGGCAAAAATAGTtatttgtatata
aaaaaattgaattatacTTAGTATGATAAATTGTAATTATAAATCAAGta
ttagtagagggcattttgtaaaatcgctcgactgttttattagaagcact
tgttatacatttttggaaagctaaggggtaggggaatcgaaattactatg
tttc Coding sequence (CDS) from alignment at scaffold_10:112097..113200 >TCONS_00045633 ID=TCONS_00045633|Name=TCONS_00045633|organism=Clytia hemisphaerica|type=CDS|length=567bp|location=Sequence derived from alignment at scaffold_10:112097..113200 (Clytia hemisphaerica) TGGATTTGTTTCGGATTTTGGATTTCGTGTTCACCTTTTGCTGTCGAGGG CATTTTGGAGATAATCAACCCTCAAATGTTAACCGATCGGGTTTTATTCG GTTTCCATATAGTATTGCTGTTATTTGAATGCATTATCCCGATCAGGTTT ATGTTATGGTGTTACCAGCGAATCCGATTTCATCTTGAGGAGAGGTCAAT TTGGATGTGTGACAACCATAtaagacaaaaacaaaacaaaattgcaCTGG AAACATTGAAACGCCTCGTCCTCGTTTTCGCTGTATGTGTCACGCCCGGG CGTCTGATGAGTGTCACTTTAAACGCCATTGGATGGGCGGTGGGTGGAAA TAAACGAAACAGAGCTTTGATTTATGCCATTCAAATAGCTACATTCCTGT TTTACATCAATAATGCTGTGAATTGTTTGATTTACGTGTCGCAAGATCAT AAGTTTAGGAAATGGTTGTTGTGCCGTGGTACTAAagctaaaagaaaatt tacacgATTTCGAAGAGTTATAGTCTACGGTAAAAATGATAATGACCAAA ACGAACAATTTATCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00045633-exon-scaffold_10-1491911889:112097..113200 | TCONS_00045633-exon-scaffold_10-1491911889:112097..113200 | Clytia hemisphaerica | exon |
TCONS_00045633-exon-scaffold_10-1510915933:112097..113200 | TCONS_00045633-exon-scaffold_10-1510915933:112097..113200 | Clytia hemisphaerica | exon |
TCONS_00045633-exon-scaffold_10-1575043694:112097..113200 | TCONS_00045633-exon-scaffold_10-1575043694:112097..113200 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_10 | supercontig | scaffold_10:112097..113200 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
Term | Definition |
GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
Term | Definition |
GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
Term | Definition |
GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
cellular_component |
GO:0016021 |
integral component of membrane |
molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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