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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045633 ID=TCONS_00045633|Name=TCONS_00045633|organism=Clytia hemisphaerica|type=transcript|length=1104bp
gaaacatagtaatttcgattcccctaccccttagctttccaaaaatgtat
aacaagtgcttctaataaaacagtcgagcgattttacaaaatgccctcta
ctaataCTTGATTTATAATTACAATTTATCATACTAAgtataattcaatt
tttttatatacaaataACTATTTTTGCCTTATTATCGTTTAGTTTGAAGA
ATCTATGCCTCGCGAAATTAACGAAATTTATAATATATTTGTTACCTTTT
TCGAAatatgattttaattttgggAGCATTCAAAGATACATTTACCATTG
AGAGTAGCCTGGACAGCAAAAGTACCTACGATTTTTTAACTTGACGTATC
TTACCGAAACTCAGGGTTTGAAATCATTGAGTTGACAAAGGCTGCATTTT
GGTTTCGAcgttgaaaaatcaaagaatgTTTTACATCTTCCATATCCAGG
CTACTTCGAAAGTCTTGAATAACTATAATCTAAATcacctttttaaaatt
ttcaaattttaagtcTGTGTAAATTAGGTAGTGAATCAGATAAATTGTTC
GTTTTGGTCATTATCATTTTTACCGTAGACTATAACTCTTCGAAATcgtg
taaattttcttttagctTTAGTACCACGGCACAACAACCATTTCCTAAAC
TTATGATCTTGCGACACGTAAATCAAACAATTCACAGCATTATTGATGTA
AAACAGGAATGTAGCTATTTGAATGGCATAAATCAAAGCTCTGTTTCGTT
TATTTCCACCCACCGCCCATCCAATGGCGTTTAAAGTGACACTCATCAGA
CGCCCGGGCGTGACACATACAGCGAAAACGAGGACGAGGCGTTTCAATGT
TTCCAGtgcaattttgttttgtttttgtcttaTATGGTTGTCACACATCC
AAATTGACCTCTCCTCAAGATGAAATCGGATTCGCTGGTAACACCATAAC
ATAAACCTGATCGGGATAATGCATTCAAATAACAGCAATACTATATGGAA
ACCGAATAAAACCCGATCGGTTAACATTTGAGGGTTGATTATCTCCAAAA
TGCCCTCGACAGCAAAAGGTGAACACGAAATCCAAAATCCGAAACAAATC
CAAC Run BLAST on NCBI protein sequence of TCONS_00045633-protein >TCONS_00045633-protein ID=TCONS_00045633-protein|Name=TCONS_00045633-protein|organism=Clytia hemisphaerica|type=polypeptide|length=188bp
WICFGFWISCSPFAVEGILEIINPQMLTDRVLFGFHIVLLLFECIIPIRF
MLWCYQRIRFHLEERSIWMCDNHIRQKQNKIALETLKRLVLVFAVCVTPG
RLMSVTLNAIGWAVGGNKRNRALIYAIQIATFLFYINNAVNCLIYVSQDH
KFRKWLLCRGTKAKRKFTRFRRVIVYGKNDNDQNEQFI Run BLAST on NCBI transcript from alignment at scaffold_10:112097..113200 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045633 ID=TCONS_00045633|Name=TCONS_00045633|organism=Clytia hemisphaerica|type=transcript|length=1104bp|location=Sequence derived from alignment at scaffold_10:112097..113200 (Clytia hemisphaerica)
GTTGGATTTGTTTCGGATTTTGGATTTCGTGTTCACCTTTTGCTGTCGAG
GGCATTTTGGAGATAATCAACCCTCAAATGTTAACCGATCGGGTTTTATT
CGGTTTCCATATAGTATTGCTGTTATTTGAATGCATTATCCCGATCAGGT
TTATGTTATGGTGTTACCAGCGAATCCGATTTCATCTTGAGGAGAGGTCA
ATTTGGATGTGTGACAACCATAtaagacaaaaacaaaacaaaattgcaCT
GGAAACATTGAAACGCCTCGTCCTCGTTTTCGCTGTATGTGTCACGCCCG
GGCGTCTGATGAGTGTCACTTTAAACGCCATTGGATGGGCGGTGGGTGGA
AATAAACGAAACAGAGCTTTGATTTATGCCATTCAAATAGCTACATTCCT
GTTTTACATCAATAATGCTGTGAATTGTTTGATTTACGTGTCGCAAGATC
ATAAGTTTAGGAAATGGTTGTTGTGCCGTGGTACTAAagctaaaagaaaa
tttacacgATTTCGAAGAGTTATAGTCTACGGTAAAAATGATAATGACCA
AAACGAACAATTTATCTGATTCACTACCTAATTTACACAgacttaaaatt
tgaaaattttaaaaaggtgATTTAGATTATAGTTATTCAAGACTTTCGAA
GTAGCCTGGATATGGAAGATGTAAAAcattctttgatttttcaacgTCGA
AACCAAAATGCAGCCTTTGTCAACTCAATGATTTCAAACCCTGAGTTTCG
GTAAGATACGTCAAGTTAAAAAATCGTAGGTACTTTTGCTGTCCAGGCTA
CTCTCAATGGTAAATGTATCTTTGAATGCTcccaaaattaaaatcatatT
TCGAAAAAGGTAACAAATATATTATAAATTTCGTTAATTTCGCGAGGCAT
AGATTCTTCAAACTAAACGATAATAAGGCAAAAATAGTtatttgtatata
aaaaaattgaattatacTTAGTATGATAAATTGTAATTATAAATCAAGta
ttagtagagggcattttgtaaaatcgctcgactgttttattagaagcact
tgttatacatttttggaaagctaaggggtaggggaatcgaaattactatg
tttc Coding sequence (CDS) from alignment at scaffold_10:112097..113200 >TCONS_00045633 ID=TCONS_00045633|Name=TCONS_00045633|organism=Clytia hemisphaerica|type=CDS|length=567bp|location=Sequence derived from alignment at scaffold_10:112097..113200 (Clytia hemisphaerica)
TGGATTTGTTTCGGATTTTGGATTTCGTGTTCACCTTTTGCTGTCGAGGG
CATTTTGGAGATAATCAACCCTCAAATGTTAACCGATCGGGTTTTATTCG
GTTTCCATATAGTATTGCTGTTATTTGAATGCATTATCCCGATCAGGTTT
ATGTTATGGTGTTACCAGCGAATCCGATTTCATCTTGAGGAGAGGTCAAT
TTGGATGTGTGACAACCATAtaagacaaaaacaaaacaaaattgcaCTGG
AAACATTGAAACGCCTCGTCCTCGTTTTCGCTGTATGTGTCACGCCCGGG
CGTCTGATGAGTGTCACTTTAAACGCCATTGGATGGGCGGTGGGTGGAAA
TAAACGAAACAGAGCTTTGATTTATGCCATTCAAATAGCTACATTCCTGT
TTTACATCAATAATGCTGTGAATTGTTTGATTTACGTGTCGCAAGATCAT
AAGTTTAGGAAATGGTTGTTGTGCCGTGGTACTAAagctaaaagaaaatt
tacacgATTTCGAAGAGTTATAGTCTACGGTAAAAATGATAATGACCAAA
ACGAACAATTTATCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045633-exon-scaffold_10-1491911889:112097..113200 | TCONS_00045633-exon-scaffold_10-1491911889:112097..113200 | Clytia hemisphaerica | exon |
| TCONS_00045633-exon-scaffold_10-1510915933:112097..113200 | TCONS_00045633-exon-scaffold_10-1510915933:112097..113200 | Clytia hemisphaerica | exon |
| TCONS_00045633-exon-scaffold_10-1575043694:112097..113200 | TCONS_00045633-exon-scaffold_10-1575043694:112097..113200 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_10 | supercontig | scaffold_10:112097..113200 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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