TCONS_00045633 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045633
Unique NameTCONS_00045633
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1104

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045633 ID=TCONS_00045633|Name=TCONS_00045633|organism=Clytia hemisphaerica|type=transcript|length=1104bp
gaaacatagtaatttcgattcccctaccccttagctttccaaaaatgtat
aacaagtgcttctaataaaacagtcgagcgattttacaaaatgccctcta
ctaataCTTGATTTATAATTACAATTTATCATACTAAgtataattcaatt
tttttatatacaaataACTATTTTTGCCTTATTATCGTTTAGTTTGAAGA
ATCTATGCCTCGCGAAATTAACGAAATTTATAATATATTTGTTACCTTTT
TCGAAatatgattttaattttgggAGCATTCAAAGATACATTTACCATTG
AGAGTAGCCTGGACAGCAAAAGTACCTACGATTTTTTAACTTGACGTATC
TTACCGAAACTCAGGGTTTGAAATCATTGAGTTGACAAAGGCTGCATTTT
GGTTTCGAcgttgaaaaatcaaagaatgTTTTACATCTTCCATATCCAGG
CTACTTCGAAAGTCTTGAATAACTATAATCTAAATcacctttttaaaatt
ttcaaattttaagtcTGTGTAAATTAGGTAGTGAATCAGATAAATTGTTC
GTTTTGGTCATTATCATTTTTACCGTAGACTATAACTCTTCGAAATcgtg
taaattttcttttagctTTAGTACCACGGCACAACAACCATTTCCTAAAC
TTATGATCTTGCGACACGTAAATCAAACAATTCACAGCATTATTGATGTA
AAACAGGAATGTAGCTATTTGAATGGCATAAATCAAAGCTCTGTTTCGTT
TATTTCCACCCACCGCCCATCCAATGGCGTTTAAAGTGACACTCATCAGA
CGCCCGGGCGTGACACATACAGCGAAAACGAGGACGAGGCGTTTCAATGT
TTCCAGtgcaattttgttttgtttttgtcttaTATGGTTGTCACACATCC
AAATTGACCTCTCCTCAAGATGAAATCGGATTCGCTGGTAACACCATAAC
ATAAACCTGATCGGGATAATGCATTCAAATAACAGCAATACTATATGGAA
ACCGAATAAAACCCGATCGGTTAACATTTGAGGGTTGATTATCTCCAAAA
TGCCCTCGACAGCAAAAGGTGAACACGAAATCCAAAATCCGAAACAAATC
CAAC
Run BLAST on NCBI

protein sequence of TCONS_00045633-protein

>TCONS_00045633-protein ID=TCONS_00045633-protein|Name=TCONS_00045633-protein|organism=Clytia hemisphaerica|type=polypeptide|length=188bp
WICFGFWISCSPFAVEGILEIINPQMLTDRVLFGFHIVLLLFECIIPIRF
MLWCYQRIRFHLEERSIWMCDNHIRQKQNKIALETLKRLVLVFAVCVTPG
RLMSVTLNAIGWAVGGNKRNRALIYAIQIATFLFYINNAVNCLIYVSQDH
KFRKWLLCRGTKAKRKFTRFRRVIVYGKNDNDQNEQFI
Run BLAST on NCBI

transcript from alignment at scaffold_10:112097..113200

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045633 ID=TCONS_00045633|Name=TCONS_00045633|organism=Clytia hemisphaerica|type=transcript|length=1104bp|location=Sequence derived from alignment at scaffold_10:112097..113200 (Clytia hemisphaerica)
GTTGGATTTGTTTCGGATTTTGGATTTCGTGTTCACCTTTTGCTGTCGAG GGCATTTTGGAGATAATCAACCCTCAAATGTTAACCGATCGGGTTTTATT CGGTTTCCATATAGTATTGCTGTTATTTGAATGCATTATCCCGATCAGGT TTATGTTATGGTGTTACCAGCGAATCCGATTTCATCTTGAGGAGAGGTCA ATTTGGATGTGTGACAACCATAtaagacaaaaacaaaacaaaattgcaCT GGAAACATTGAAACGCCTCGTCCTCGTTTTCGCTGTATGTGTCACGCCCG GGCGTCTGATGAGTGTCACTTTAAACGCCATTGGATGGGCGGTGGGTGGA AATAAACGAAACAGAGCTTTGATTTATGCCATTCAAATAGCTACATTCCT GTTTTACATCAATAATGCTGTGAATTGTTTGATTTACGTGTCGCAAGATC ATAAGTTTAGGAAATGGTTGTTGTGCCGTGGTACTAAagctaaaagaaaa tttacacgATTTCGAAGAGTTATAGTCTACGGTAAAAATGATAATGACCA AAACGAACAATTTATCTGATTCACTACCTAATTTACACAgacttaaaatt tgaaaattttaaaaaggtgATTTAGATTATAGTTATTCAAGACTTTCGAA GTAGCCTGGATATGGAAGATGTAAAAcattctttgatttttcaacgTCGA AACCAAAATGCAGCCTTTGTCAACTCAATGATTTCAAACCCTGAGTTTCG GTAAGATACGTCAAGTTAAAAAATCGTAGGTACTTTTGCTGTCCAGGCTA CTCTCAATGGTAAATGTATCTTTGAATGCTcccaaaattaaaatcatatT TCGAAAAAGGTAACAAATATATTATAAATTTCGTTAATTTCGCGAGGCAT AGATTCTTCAAACTAAACGATAATAAGGCAAAAATAGTtatttgtatata aaaaaattgaattatacTTAGTATGATAAATTGTAATTATAAATCAAGta ttagtagagggcattttgtaaaatcgctcgactgttttattagaagcact tgttatacatttttggaaagctaaggggtaggggaatcgaaattactatg tttc

Coding sequence (CDS) from alignment at scaffold_10:112097..113200

>TCONS_00045633 ID=TCONS_00045633|Name=TCONS_00045633|organism=Clytia hemisphaerica|type=CDS|length=567bp|location=Sequence derived from alignment at scaffold_10:112097..113200 (Clytia hemisphaerica)
TGGATTTGTTTCGGATTTTGGATTTCGTGTTCACCTTTTGCTGTCGAGGG
CATTTTGGAGATAATCAACCCTCAAATGTTAACCGATCGGGTTTTATTCG
GTTTCCATATAGTATTGCTGTTATTTGAATGCATTATCCCGATCAGGTTT
ATGTTATGGTGTTACCAGCGAATCCGATTTCATCTTGAGGAGAGGTCAAT
TTGGATGTGTGACAACCATAtaagacaaaaacaaaacaaaattgcaCTGG
AAACATTGAAACGCCTCGTCCTCGTTTTCGCTGTATGTGTCACGCCCGGG
CGTCTGATGAGTGTCACTTTAAACGCCATTGGATGGGCGGTGGGTGGAAA
TAAACGAAACAGAGCTTTGATTTATGCCATTCAAATAGCTACATTCCTGT
TTTACATCAATAATGCTGTGAATTGTTTGATTTACGTGTCGCAAGATCAT
AAGTTTAGGAAATGGTTGTTGTGCCGTGGTACTAAagctaaaagaaaatt
tacacgATTTCGAAGAGTTATAGTCTACGGTAAAAATGATAATGACCAAA
ACGAACAATTTATCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029178XLOC_029178Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045633-proteinTCONS_00045633-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045633-exon-scaffold_10-1491911889:112097..113200TCONS_00045633-exon-scaffold_10-1491911889:112097..113200Clytia hemisphaericaexon
TCONS_00045633-exon-scaffold_10-1510915933:112097..113200TCONS_00045633-exon-scaffold_10-1510915933:112097..113200Clytia hemisphaericaexon
TCONS_00045633-exon-scaffold_10-1575043694:112097..113200TCONS_00045633-exon-scaffold_10-1575043694:112097..113200Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:112097..113200 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.261332 0.206963 0.0907599 0.0444735 0.269562 0.593047 0.154055 0.240224 0.235475 0.166741 0 0.107088 0.158857 0.33013 0.115711 0.267993 0.243511 0.430146 0.12833 0.0444363 1.3693 1.15856 1.15349 0.839333 0.298969 0.342926 0.225792 0.177741 0.320904 0.76317
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045633 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top