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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045631 ID=TCONS_00045631|Name=TCONS_00045631|organism=Clytia hemisphaerica|type=transcript|length=1804bp
GTATTCAGGTTAACTTGGTATGTCCTAGAGGGGGTGTGTATTGACACGAG
GCAGTTTCACAGTGTTGACTTGACTTCCATGTACAAGAGGGTActttaac
ttttcaaaaattatataggATGGGTTTTAAAGTGATGGGGGTGTATGATT
GCGTTGGGAGATGTTTCAACCACATCAGGAAGCTGGAGCATAGCATGACA
ACGAAAGTTAGACACATCTAAAAGACATTTATCAAAAAGTCGTTTTACAG
ACTAACACTAGAAATAATTATAACTATACAAAATATCTATAATAAATCAT
AAGCAAAGATCGTCATTTAGGTGGTCGAAAAGATCCATTGAAGACTGAAC
TTccttcaaaacatttttatcgTCGCAATATTTGACGCAACCAGTTCCTA
AAGGTTCGCAATGTGCTTCATTATGTACAGCATTCAAATAAACAAAGTCT
GGAAAACTACGGTGGCTCGGACATTCTAAAGCAGCTATGTCATCTTCGTC
GCCCATGATAGAAACAAACACATtggaaaatttcttattaccttTTCGTT
CTTCCGTTTTGAACTTTTCAACTTCATGGTCGCTCATGAATCGAAGGTTA
CTGTTTATCCTCAGCGTACGTCGTCTCCAGAAAGCAAAATTACCGTTAAA
CGATCTAAACTCGTAAAATATGATTTGTAATGACGAATTGTTTGATTTTT
GACGTTTCTCGTTCTCTTTGAGTAAAAGATTAGCTGCCTCTGGGAAAAAA
ATCTCATCTAGTTGATCCATacctacaaaaatattttccacattttgaaG
GCAGTTTCGTTTGAAATAATTCATTGGGTCTGGTGCAATCAAGCGGTAGT
CGTATCTATTAAAATCTGGATTCAATATCAGACCCCTCACATTTAGCATA
GTATCATCGTCACTTTTACGCTTGAATGGGAGATCAGGGTTTACAACTAG
TCTATGGTATGGTATCCAGTTCCCCTTTGGGCATTCGGATGGATGGCACA
GTACAATGATGTTCCAATTCCTCTCCTCTTGCAATTTTTGGCATCTCTTC
CAGATTCCGTATGGGGAGGTTTCTTCGACATTGAAATAGAACAAATCATA
AAGGACGATCAAAAGTGTTTGACTGCTTTCCTTCCCTCCAGAGTTCATTT
GAGAAATCTTTTCGAAATATAATTTGTCNAGAACAAATCATAAAGGACGA
TCAAAAGTGTTTGACTGCTTTCCTTCCCTCCAGAGTTCATTTGAGAAATC
TTTTCGAAATATAATTTGTCTAGCAAGTTCGCTAGTTGTGAAGCTAGAAG
CTTAGCGTTTGGATATCTATATTGGTCCCAACTTGTGTAGTTTGCGTGAT
AAGGGTATCCCGTGTCGAAGTTTTTCCACTCGACCATGTCGTCTCTGCTG
AAGTCATAATATTGGAATGTGAAGCATTCTGGTTGACCGACCAATTCTTT
TAAGTGTAAGTTCAGTAGTTCGTCAAATTCTTTACGGTAAAGCCACATTG
CGGACACCTGCACCACAGTAATCTTCTGTGGTTTTAATAGACATTCTTTG
AACATTGAAGAGCCATCATTGTTTCTAAGTAAACAAGTTAACGATAGCAA
CAGTGCCAGCCAATAGAGAGATTGGAGTACCATTAGGTGCTTCGATTCAC
AGCTAATGTACGTAGTGCTTCAACTTTTCCGCCAGTAGACGGATATTCGT
CAAGTTGAGATTTTCTGTCTTAAATTGTAAGCGTTAGACGAGCGAAATTT
CTTAGACTGTTTTCTATAATTTTGAACTTCCTCTTTAGTTTATGCTTCCG
ATGT Run BLAST on NCBI protein sequence of TCONS_00045631-protein >TCONS_00045631-protein ID=TCONS_00045631-protein|Name=TCONS_00045631-protein|organism=Clytia hemisphaerica|type=polypeptide|length=283bp
MNSGGKESSQTLLIVLYDLFYFNVEETSPYGIWKRCQKLQEERNWNIIVL
CHPSECPKGNWIPYHRLVVNPDLPFKRKSDDDTMLNVRGLILNPDFNRYD
YRLIAPDPMNYFKRNCLQNVENIFVGMDQLDEIFFPEAANLLLKENEKRQ
KSNNSSLQIIFYEFRSFNGNFAFWRRRTLRINSNLRFMSDHEVEKFKTEE
RKGNKKFSNVFVSIMGDEDDIAALECPSHRSFPDFVYLNAVHNEAHCEPL
GTGCVKYCDDKNVLKEVQSSMDLFDHLNDDLCL Run BLAST on NCBI transcript from alignment at scaffold_10:82323..84126 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045631 ID=TCONS_00045631|Name=TCONS_00045631|organism=Clytia hemisphaerica|type=transcript|length=1804bp|location=Sequence derived from alignment at scaffold_10:82323..84126 (Clytia hemisphaerica)
ACATCGGAAGCATAAACTAAAGAGGAAGTTCAAAATTATAGAAAACAGTC
TAAGAAATTTCGCTCGTCTAACGCTTACAATTTAAGACAGAAAATCTCAA
CTTGACGAATATCCGTCTACTGGCGGAAAAGTTGAAGCACTACGTACATT
AGCTGTGAATCGAAGCACCTAATGGTACTCCAATCTCTCTATTGGCTGGC
ACTGTTGCTATCGTTAACTTGTTTACTTAGAAACAATGATGGCTCTTCAA
TGTTCAAAGAATGTCTATTAAAACCACAGAAGATTACTGTGGTGCAGGTG
TCCGCAATGTGGCTTTACCGTAAAGAATTTGACGAACTACTGAACTTACA
CTTAAAAGAATTGGTCGGTCAACCAGAATGCTTCACATTCCAATATTATG
ACTTCAGCAGAGACGACATGGTCGAGTGGAAAAACTTCGACACGGGATAC
CCTTATCACGCAAACTACACAAGTTGGGACCAATATAGATATCCAAACGC
TAAGCTTCTAGCTTCACAACTAGCGAACTTGCTAGACAAATTATATTTCG
AAAAGATTTCTCAAATGAACTCTGGAGGGAAGGAAAGCAGTCAAACACTT
TTGATCGTCCTTTATGATTTGTTCTNGACAAATTATATTTCGAAAAGATT
TCTCAAATGAACTCTGGAGGGAAGGAAAGCAGTCAAACACTTTTGATCGT
CCTTTATGATTTGTTCTATTTCAATGTCGAAGAAACCTCCCCATACGGAA
TCTGGAAGAGATGCCAAAAATTGCAAGAGGAGAGGAATTGGAACATCATT
GTACTGTGCCATCCATCCGAATGCCCAAAGGGGAACTGGATACCATACCA
TAGACTAGTTGTAAACCCTGATCTCCCATTCAAGCGTAAAAGTGACGATG
ATACTATGCTAAATGTGAGGGGTCTGATATTGAATCCAGATTTTAATAGA
TACGACTACCGCTTGATTGCACCAGACCCAATGAATTATTTCAAACGAAA
CTGCCttcaaaatgtggaaaatatttttgtaggtATGGATCAACTAGATG
AGATTTTTTTCCCAGAGGCAGCTAATCTTTTACTCAAAGAGAACGAGAAA
CGTCAAAAATCAAACAATTCGTCATTACAAATCATATTTTACGAGTTTAG
ATCGTTTAACGGTAATTTTGCTTTCTGGAGACGACGTACGCTGAGGATAA
ACAGTAACCTTCGATTCATGAGCGACCATGAAGTTGAAAAGTTCAAAACG
GAAGAACGAAaaggtaataagaaattttccaATGTGTTTGTTTCTATCAT
GGGCGACGAAGATGACATAGCTGCTTTAGAATGTCCGAGCCACCGTAGTT
TTCCAGACTTTGTTTATTTGAATGCTGTACATAATGAAGCACATTGCGAA
CCTTTAGGAACTGGTTGCGTCAAATATTGCGAcgataaaaatgttttgaa
ggAAGTTCAGTCTTCAATGGATCTTTTCGACCACCTAAATGACGATCTTT
GCTTATGATTTATTATAGATATTTTGTATAGTTATAATTATTTCTAGTGT
TAGTCTGTAAAACGACTTTTTGATAAATGTCTTTTAGATGTGTCTAACTT
TCGTTGTCATGCTATGCTCCAGCTTCCTGATGTGGTTGAAACATCTCCCA
ACGCAATCATACACCCCCATCACTTTAAAACCCATcctatataatttttg
aaaagttaaagTACCCTCTTGTACATGGAAGTCAAGTCAACACTGTGAAA
CTGCCTCGTGTCAATACACACCCCCTCTAGGACATACCAAGTTAACCTGA
ATAC Coding sequence (CDS) from alignment at scaffold_10:82323..84126 >TCONS_00045631 ID=TCONS_00045631|Name=TCONS_00045631|organism=Clytia hemisphaerica|type=CDS|length=852bp|location=Sequence derived from alignment at scaffold_10:82323..84126 (Clytia hemisphaerica)
ATGAACTCTGGAGGGAAGGAAAGCAGTCAAACACTTTTGATCGTCCTTTA
TGATTTGTTCTATTTCAATGTCGAAGAAACCTCCCCATACGGAATCTGGA
AGAGATGCCAAAAATTGCAAGAGGAGAGGAATTGGAACATCATTGTACTG
TGCCATCCATCCGAATGCCCAAAGGGGAACTGGATACCATACCATAGACT
AGTTGTAAACCCTGATCTCCCATTCAAGCGTAAAAGTGACGATGATACTA
TGCTAAATGTGAGGGGTCTGATATTGAATCCAGATTTTAATAGATACGAC
TACCGCTTGATTGCACCAGACCCAATGAATTATTTCAAACGAAACTGCCt
tcaaaatgtggaaaatatttttgtaggtATGGATCAACTAGATGAGATTT
TTTTCCCAGAGGCAGCTAATCTTTTACTCAAAGAGAACGAGAAACGTCAA
AAATCAAACAATTCGTCATTACAAATCATATTTTACGAGTTTAGATCGTT
TAACGGTAATTTTGCTTTCTGGAGACGACGTACGCTGAGGATAAACAGTA
ACCTTCGATTCATGAGCGACCATGAAGTTGAAAAGTTCAAAACGGAAGAA
CGAAaaggtaataagaaattttccaATGTGTTTGTTTCTATCATGGGCGA
CGAAGATGACATAGCTGCTTTAGAATGTCCGAGCCACCGTAGTTTTCCAG
ACTTTGTTTATTTGAATGCTGTACATAATGAAGCACATTGCGAACCTTTA
GGAACTGGTTGCGTCAAATATTGCGAcgataaaaatgttttgaaggAAGT
TCAGTCTTCAATGGATCTTTTCGACCACCTAAATGACGATCTTTGCTTAT
GA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045631-exon-scaffold_10-1491911889:82323..84126 | TCONS_00045631-exon-scaffold_10-1491911889:82323..84126 | Clytia hemisphaerica | exon |
| TCONS_00045631-exon-scaffold_10-1510915933:82323..84126 | TCONS_00045631-exon-scaffold_10-1510915933:82323..84126 | Clytia hemisphaerica | exon |
| TCONS_00045631-exon-scaffold_10-1575043694:82323..84126 | TCONS_00045631-exon-scaffold_10-1575043694:82323..84126 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_10 | supercontig | scaffold_10:82323..84126 . |
Blast
The following BLAST results are available for this feature:
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