TCONS_00045628 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045628
Unique NameTCONS_00045628
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length811

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045628 ID=TCONS_00045628|Name=TCONS_00045628|organism=Clytia hemisphaerica|type=transcript|length=811bp
AAAAGCCAAGCCtgattatgtacaaaaattgtcACCATCGGTTTTAGTTT
CTCTATATAGATGTACTTGTATTCAATTTATTCATTATTAATCTTATTTA
CAGTAACAAACAAAGTATAAGTTAATAGAACAAATAATATATAGAAGTAA
CATTATTAAGTGAGAAATGGCTACTCCAACTAAACAACAACAAGCCACCC
CTTCACAACAACAGCATCAAGTCACCCCTTCACAAGAAATACAGCAAGCC
ACCCCCTCACAACAGCACAGCCAAACCACACCTTtacaagaaaaacaaca
atccAGTCAAGTGATCTCAGCGTCCCGTCCACCTAAAAGAAACCTCTTTT
CGCCCTCCAAATCACCCATACCAAAAAAAGTTCTTCTAACTCCCACTAAA
ATTGATGGTAAGAGTTTACAAATGCAAACAATTATGGAAAGAATCAAATG
CAGACAGATTCAAAATGCACAGGACATTGAGTTGCTCATAAAAGAGAATC
GTCAGCTTCGTGCTAAAAACAAAGAGCTGATTTTTCAAATTAATCAATTT
AGAAAAAGTGAAGAAGAAAAACAGAAAAGGGAAGAAGACATCGTTTCAGA
CATTTTCAAGGATGAAATGGAATTTTGAGATCCTGAACCGTTTCTTTTGT
TGTCTTTAAATGACTGTACATGTTTTGTTAATAGTTGCCTTATTCATATT
TTTTGCACATTATAGTAGTTGATATATTTGAAAAAAAATATAAGTGAAAG
ATTATCACAGTAAATATCTTTTCCAAGTTAGTCGAACAATTACTTCGAAA
ATACTACTAAC
Run BLAST on NCBI

protein sequence of TCONS_00045628-protein

>TCONS_00045628-protein ID=TCONS_00045628-protein|Name=TCONS_00045628-protein|organism=Clytia hemisphaerica|type=polypeptide|length=153bp
MATPTKQQQATPSQQQHQVTPSQEIQQATPSQQHSQTTPLQEKQQSSQVI
SASRPPKRNLFSPSKSPIPKKVLLTPTKIDGKSLQMQTIMERIKCRQIQN
AQDIELLIKENRQLRAKNKELIFQINQFRKSEEEKQKREEDIVSDIFKDE
MEF
Run BLAST on NCBI

transcript from alignment at scaffold_10:11912..12722

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045628 ID=TCONS_00045628|Name=TCONS_00045628|organism=Clytia hemisphaerica|type=transcript|length=811bp|location=Sequence derived from alignment at scaffold_10:11912..12722 (Clytia hemisphaerica)
GTTAGTAGTATTTTCGAAGTAATTGTTCGACTAACTTGGAAAAGATATTT
ACTGTGATAATCTTTCACTTATATTTTTTTTCAAATATATCAACTACTAT
AATGTGCAAAAAATATGAATAAGGCAACTATTAACAAAACATGTACAGTC
ATTTAAAGACAACAAAAGAAACGGTTCAGGATCTCAAAATTCCATTTCAT
CCTTGAAAATGTCTGAAACGATGTCTTCTTCCCTTTTCTGTTTTTCTTCT
TCACTTTTTCTAAATTGATTAATTTGAAAAATCAGCTCTTTGTTTTTAGC
ACGAAGCTGACGATTCTCTTTTATGAGCAACTCAATGTCCTGTGCATTTT
GAATCTGTCTGCATTTGATTCTTTCCATAATTGTTTGCATTTGTAAACTC
TTACCATCAATTTTAGTGGGAGTTAGAAGAACTTTTTTTGGTATGGGTGA
TTTGGAGGGCGAAAAGAGGTTTCTTTTAGGTGGACGGGACGCTGAGATCA
CTTGACTggattgttgtttttcttgtaAAGGTGTGGTTTGGCTGTGCTGT
TGTGAGGGGGTGGCTTGCTGTATTTCTTGTGAAGGGGTGACTTGATGCTG
TTGTTGTGAAGGGGTGGCTTGTTGTTGTTTAGTTGGAGTAGCCATTTCTC
ACTTAATAATGTTACTTCTATATATTATTTGTTCTATTAACTTATACTTT
GTTTGTTACTGTAAATAAGATTAATAATGAATAAATTGAATACAAGTACA
TCTATATAGAGAAACTAAAACCGATGGTgacaatttttgtacataatcaG
GCTTGGCTTTT

Coding sequence (CDS) from alignment at scaffold_10:11912..12722

>TCONS_00045628 ID=TCONS_00045628|Name=TCONS_00045628|organism=Clytia hemisphaerica|type=CDS|length=462bp|location=Sequence derived from alignment at scaffold_10:11912..12722 (Clytia hemisphaerica)
TCAAAATTCCATTTCATCCTTGAAAATGTCTGAAACGATGTCTTCTTCCC
TTTTCTGTTTTTCTTCTTCACTTTTTCTAAATTGATTAATTTGAAAAATC
AGCTCTTTGTTTTTAGCACGAAGCTGACGATTCTCTTTTATGAGCAACTC
AATGTCCTGTGCATTTTGAATCTGTCTGCATTTGATTCTTTCCATAATTG
TTTGCATTTGTAAACTCTTACCATCAATTTTAGTGGGAGTTAGAAGAACT
TTTTTTGGTATGGGTGATTTGGAGGGCGAAAAGAGGTTTCTTTTAGGTGG
ACGGGACGCTGAGATCACTTGACTggattgttgtttttcttgtaAAGGTG
TGGTTTGGCTGTGCTGTTGTGAGGGGGTGGCTTGCTGTATTTCTTGTGAA
GGGGTGACTTGATGCTGTTGTTGTGAAGGGGTGGCTTGTTGTTGTTTAGT
TGGAGTAGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029173XLOC_029173Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045628-proteinTCONS_00045628-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045628-exon-scaffold_10-1491911889:11912..12722TCONS_00045628-exon-scaffold_10-1491911889:11912..12722Clytia hemisphaericaexon
TCONS_00045628-exon-scaffold_10-1510915933:11912..12722TCONS_00045628-exon-scaffold_10-1510915933:11912..12722Clytia hemisphaericaexon
TCONS_00045628-exon-scaffold_10-1575043694:11912..12722TCONS_00045628-exon-scaffold_10-1575043694:11912..12722Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:11912..12722 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.03317	1.13565	0.833446	0.8849	0.431005	0.425638	0	0.313993	0.0931338	0.814079	0.0669284	0	0	0.0453455	0	0	0	0	0	0	0.226371	0.59255	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045628 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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