TCONS_00045627 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045627
Unique NameTCONS_00045627
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length415

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045627 ID=TCONS_00045627|Name=TCONS_00045627|organism=Clytia hemisphaerica|type=transcript|length=415bp
CAGTATGTTTGATTTTACAGTCAATGAGTCCATTGTGTGTGAAAGTTTGC
CCGGTGGTGGTGATACTGGTTGCAATAAAAGAATTGATAAAGAAGAGACG
AATAAGATTTTAAATCTAATCCCGAGGGACACTGAACAACCGCATACTAT
ACAAGAACTTTTGAATGAATACTTTAATCCATATGGTCTTCCGCAAGAAG
ATTACCGTTGTGAGTATGCTAATGGTGGATGTGGCAAGCGTGGGCACTGC
ACAAAGGCTTCTCTTCTTACTAATTCTGCTGAATCAATCATAATACAATT
AAAGCTATTCAAGAGTAACATGTATGGTCAGAGCAGGAAGATATTTCCCA
ATATCACAATCGAAGAAGAAATTGTTCAGTTTGAAAACTTCAATTTGAAA
TGTATAATCTGGCAC
Run BLAST on NCBI

protein sequence of TCONS_00045627-protein

>TCONS_00045627-protein ID=TCONS_00045627-protein|Name=TCONS_00045627-protein|organism=Clytia hemisphaerica|type=polypeptide|length=138bp
SMFDFTVNESIVCESLPGGGDTGCNKRIDKEETNKILNLIPRDTEQPHTI
QELLNEYFNPYGLPQEDYRCEYANGGCGKRGHCTKASLLTNSAESIIIQL
KLFKSNMYGQSRKIFPNITIEEEIVQFENFNLKCIIWH
Run BLAST on NCBI

transcript from alignment at scaffold_10:10072..10486

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045627 ID=TCONS_00045627|Name=TCONS_00045627|organism=Clytia hemisphaerica|type=transcript|length=415bp|location=Sequence derived from alignment at scaffold_10:10072..10486 (Clytia hemisphaerica)
GTGCCAGATTATACATTTCAAATTGAAGTTTTCAAACTGAACAATTTCTT
CTTCGATTGTGATATTGGGAAATATCTTCCTGCTCTGACCATACATGTTA
CTCTTGAATAGCTTTAATTGTATTATGATTGATTCAGCAGAATTAGTAAG
AAGAGAAGCCTTTGTGCAGTGCCCACGCTTGCCACATCCACCATTAGCAT
ACTCACAACGGTAATCTTCTTGCGGAAGACCATATGGATTAAAGTATTCA
TTCAAAAGTTCTTGTATAGTATGCGGTTGTTCAGTGTCCCTCGGGATTAG
ATTTAAAATCTTATTCGTCTCTTCTTTATCAATTCTTTTATTGCAACCAG
TATCACCACCACCGGGCAAACTTTCACACACAATGGACTCATTGACTGTA
AAATCAAACATACTG

Coding sequence (CDS) from alignment at scaffold_10:10072..10486

>TCONS_00045627 ID=TCONS_00045627|Name=TCONS_00045627|organism=Clytia hemisphaerica|type=CDS|length=414bp|location=Sequence derived from alignment at scaffold_10:10072..10486 (Clytia hemisphaerica)
GTGCCAGATTATACATTTCAAATTGAAGTTTTCAAACTGAACAATTTCTT
CTTCGATTGTGATATTGGGAAATATCTTCCTGCTCTGACCATACATGTTA
CTCTTGAATAGCTTTAATTGTATTATGATTGATTCAGCAGAATTAGTAAG
AAGAGAAGCCTTTGTGCAGTGCCCACGCTTGCCACATCCACCATTAGCAT
ACTCACAACGGTAATCTTCTTGCGGAAGACCATATGGATTAAAGTATTCA
TTCAAAAGTTCTTGTATAGTATGCGGTTGTTCAGTGTCCCTCGGGATTAG
ATTTAAAATCTTATTCGTCTCTTCTTTATCAATTCTTTTATTGCAACCAG
TATCACCACCACCGGGCAAACTTTCACACACAATGGACTCATTGACTGTA
AAATCAAACATACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029172XLOC_029172Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045627-exon-scaffold_10-1491911889:10072..10486TCONS_00045627-exon-scaffold_10-1491911889:10072..10486Clytia hemisphaericaexon
TCONS_00045627-exon-scaffold_10-1510915933:10072..10486TCONS_00045627-exon-scaffold_10-1510915933:10072..10486Clytia hemisphaericaexon
TCONS_00045627-exon-scaffold_10-1575043694:10072..10486TCONS_00045627-exon-scaffold_10-1575043694:10072..10486Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045627-proteinTCONS_00045627-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:10072..10486 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.232251	0.91764	0	0.414579	0	0.359529	0	0.114699	0	0	0	0	0	0	0	0	0	0	0	0	0	0.330051	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045627 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top