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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045617 ID=TCONS_00045617|Name=TCONS_00045617|organism=Clytia hemisphaerica|type=transcript|length=1240bp
CTTCATATGGCACGAAATCTTTATATAATGATAAATTATGAACGTGATAG
GCAGaaacaataaatataaataaatgttttaatgacttttttctttcact
acAGCATTGGTAGTGATTGGAAAGATGTTTGTTGGTTTGGCAGCTGGAAT
GGTGTTTACCATCAATGTGGATATCTATCCCACCGTTGTCAGAAATACAT
GTAATGGGTTATCAATAGCATTCGGTCGTTTTGGTGGAATTCTTGGACCA
CAAGTTGTATTGCTGGGTGTGTATACAACGCCAGATAACCCTGTTCTGGT
GGTTGGCATCTTGACGTTGATCGCTGCTGTTTGTTTATACATTCTACCTG
ATATGAGGAAACACAACCATCCAAACACTTTACAAGATTTAAAGGAATat
cgaaaatatcgaaaagCAGCAAAGACCAATAAGAAAAATGGAGATAAGGA
ATTGATTGAACCTGAGCTTAAACCTCATGAAGAATCTGATGTAGTATGAA
CGAAAATCATTGTGGTTTTGACTTTGTCCGTTGGAAATATAACACAAAGT
GTTATGTAGATGGTGCACGGGGGTGCTAGGTCTGCGAGATGGGTaatgtc
cgagccaaagttcaAAAATCGACCTTTttagagactgaatttcgaaagtt
ttgtccattttttgacgtttttgctacCCTTAGAGAAACTACAATCAGAC
AGAACTGTTTGTCCATCCCCTAAGTCTTGTGAGTGAACTTGATtttgggg
ggagagggggggggCTTGCCGGTCGAAAGGGTCGTCGGAGCCCAgcctaa
aatttcagccaaaattttcaaattttagtccaaatttatAGGATTTATGA
CCCTTTGTTGATGGAGAAAATTGCTCCATCGTAATGAACATTTAATTGGT
CACAATGTTTATGTTTCTATGTTTTAATTGGTGTAGAGTCTTTTAGTTTT
ACATGTGTCTCTTGAGTCCTCTTTTGTTTAGTGTCCCTTTTGTTTTGAGT
CTTTGAGTGTTTTTTGTATTCCCAAATTTGCGTTTTATATTCATTTGTAA
TTCCTCTAGAGAAATCAGGATATGTTTATTAACTATAATTTTGTTTTCGT
ACATAGAAATCAGTTTAACACTGAGAGACGTGATTGAGTGTCTTGTGTGT
GAAAGGTGCGTTTTACTTTTCAATGTCTTATTTCGGCTCTTTTTGGTTTT
GTACTTGTAGCAATTTAGGTTTGTTTAAGTTCAAGAATTG Run BLAST on NCBI protein sequence of TCONS_00045617-protein >TCONS_00045617-protein ID=TCONS_00045617-protein|Name=TCONS_00045617-protein|organism=Clytia hemisphaerica|type=polypeptide|length=124bp
MFVGLAAGMVFTINVDIYPTVVRNTCNGLSIAFGRFGGILGPQVVLLGVY
TTPDNPVLVVGILTLIAAVCLYILPDMRKHNHPNTLQDLKEYRKYRKAAK
TNKKNGDKELIEPELKPHEESDVV Run BLAST on NCBI transcript from alignment at scaffold_10:179012..180778- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045617 ID=TCONS_00045617|Name=TCONS_00045617|organism=Clytia hemisphaerica|type=transcript|length=1767bp|location=Sequence derived from alignment at scaffold_10:179012..180778- (Clytia hemisphaerica)
CTTCATATGGCACGAAATCTTTATATAATGATAAATTATGAACGTGATAG
GCAGAAACAATAAATATAAATAAATGTTTTAATGACTTTTTTCTTTCACT
ACAGCATTGGTAGTGATTGGAAAGATGTTTGTTGGTTTGGCAGCTGGAAT
GGTGTTTACCATCAATGTGGATATCTATCCCACCGTTGTCAGGTGAGTGC
AAAAATTCTATGTCCTTAAAGTAAAGCTATTTATCCCAAAGGGCTGGGTC
GAGTTTGCCAGGGCTGAATAACGTCATCCAACATAGGTAAATTGTTACTA
ACCCCCTTCAGAATTTGGCTGAAGGGTTGATAGATGTATGCTGGTCTTGA
AATCATATGACTGGTAACTAACTTTTTGTCATTCTCCCAGTACACGCACT
TAAATCAACCCTAAACAATGCGATTGATAAGATTTCTGCTGGAGAGAACT
TACAAGATATAGTTTAGAGTGTTTTAACAAAGATTTTAATCATGCCAAAG
ATCTAAAAAATGAACTTTGAATAAAATGACCTTCTCTCAATTATCTTTTC
GACGATCTTTCCTGGTTTGACCTATTCTTTTCCAGAAATACATGTAATGG
GTTATCAATAGCATTCGGTCGTTTTGGTGGAATTCTTGGACCACAAGTTG
TATTGCTGGTAAGTCTTGAATTCAATCTTGTTGTGCATTGCTGTAACTGA
TGAATTTTGTCCACCCACATCGTTCAAAATAAATTTCGAATTCAATTTTG
TTACTGTCTTCGTCGTAACTTCAATTTCATTTCCAATTCCAGGGTGTGTA
TACAACGCCAGATAACCCTGTTCTGGTGGTTGGCATCTTGACGTTGATCG
CTGCTGTTTGTTTATACATTCTACCTGATATGAGGAAACACAACCATCCA
AACACTTTACAAGATTTAAAGGAATATCGAAAATATCGAAAAGCAGCAAA
GACCAATAAGAAAAATGGAGATAAGGAATTGATTGAACCTGAGCTTAAAC
CTCATGAAGAATCTGATGTAGTATGAACGAAAATCATTGTGGTTTTGACT
TTGTCCGTTGGAAATATAACACAAAGTGTTATGTAGATGGTGCACGGGGG
TGCTAGGTCTGCGAGATGGGTAATGTCCGAGCCAAAGTTCAAAAATCGAC
CTTTTTAGAGACTGAATTTCGAAAGTTTTGTCCATTTTTTGACGTTTTTG
CTACCCTTAGAGAAACTACAATCAGACAGAACTGTTTGTCCATCCCCTAA
GTCTTGTGAGTGAACTTGATTTTGGGGGGAGAGGGGGGGGGCTTGCCGGT
CGAAAGGGTCGTCGGAGCCCAGCCTAAAATTTCAGCCAAAATTTTCAAAT
TTTAGTCCAAATTTATAGGATTTATGACCCTTTGTTGATGGAGAAAATTG
CTCCATCGTAATGAACATTTAATTGGTCACAATGTTTATGTTTCTATGTT
TTAATTGGTGTAGAGTCTTTTAGTTTTACATGTGTCTCTTGAGTCCTCTT
TTGTTTAGTGTCCCTTTTGTTTTGAGTCTTTGAGTGTTTTTTGTATTCCC
AAATTTGCGTTTTATATTCATTTGTAATTCCTCTAGAGAAATCAGGATAT
GTTTATTAACTATAATTTTGTTTTCGTACATAGAAATCAGTTTAACACTG
AGAGACGTGATTGAGTGTCTTGTGTGTGAAAGGTGCGTTTTACTTTTCAA
TGTCTTATTTCGGCTCTTTTTGGTTTTGTACTTGTAGCAATTTAGGTTTG
TTTAAGTTCAAGAATTG Coding sequence (CDS) from alignment at scaffold_10:179012..180778- >TCONS_00045617 ID=TCONS_00045617|Name=TCONS_00045617|organism=Clytia hemisphaerica|type=CDS|length=1125bp|location=Sequence derived from alignment at scaffold_10:179012..180778- (Clytia hemisphaerica)
GGTGTGTATACAACGCCAGATAACCCTGTTCTGGTGGTTGGCATCTTGAC
GTTGATCGCTGCTGTTTGTTTATACATTCTACCTGATATGAGGAAACACA
ACCATCCAAACACTTTACAAGATTTAAAGGAATATCGAAAATATCGAAAA
GCAGCAAAGACCAATAAGAAAAATGGAGATAAGGAATTGATTGAACCTGA
GCTTAAACCTCATGAAGAATCTGATGTAGTATGAAAATACATGTAATGGG
TTATCAATAGCATTCGGTCGTTTTGGTGGAATTCTTGGACCACAAGTTGT
ATTGCTGATGTTTGTTGGTTTGGCAGCTGGAATGGTGTTTACCATCAATG
TGGATATCTATCCCACCGTTGTCAGGGTGTGTATACAACGCCAGATAACC
CTGTTCTGGTGGTTGGCATCTTGACGTTGATCGCTGCTGTTTGTTTATAC
ATTCTACCTGATATGAGGAAACACAACCATCCAAACACTTTACAAGATTT
AAAGGAATATCGAAAATATCGAAAAGCAGCAAAGACCAATAAGAAAAATG
GAGATAAGGAATTGATTGAACCTGAGCTTAAACCTCATGAAGAATCTGAT
GTAGTATGAAAATACATGTAATGGGTTATCAATAGCATTCGGTCGTTTTG
GTGGAATTCTTGGACCACAAGTTGTATTGCTGATGTTTGTTGGTTTGGCA
GCTGGAATGGTGTTTACCATCAATGTGGATATCTATCCCACCGTTGTCAG
GGTGTGTATACAACGCCAGATAACCCTGTTCTGGTGGTTGGCATCTTGAC
GTTGATCGCTGCTGTTTGTTTATACATTCTACCTGATATGAGGAAACACA
ACCATCCAAACACTTTACAAGATTTAAAGGAATATCGAAAATATCGAAAA
GCAGCAAAGACCAATAAGAAAAATGGAGATAAGGAATTGATTGAACCTGA
GCTTAAACCTCATGAAGAATCTGATGTAGTATGAAAATACATGTAATGGG
TTATCAATAGCATTCGGTCGTTTTGGTGGAATTCTTGGACCACAAGTTGT
ATTGCTGATGTTTGTTGGTTTGGCAGCTGGAATGGTGTTTACCATCAATG
TGGATATCTATCCCACCGTTGTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045617-exon-scaffold_10-1575043694:180587..180778 | TCONS_00045617-exon-scaffold_10-1575043694:180587..180778 | Clytia hemisphaerica | exon |
| TCONS_00045617-exon-scaffold_10-1575043694:180121..180193 | TCONS_00045617-exon-scaffold_10-1575043694:180121..180193 | Clytia hemisphaerica | exon |
| TCONS_00045617-exon-scaffold_10-1575043694:179012..179986 | TCONS_00045617-exon-scaffold_10-1575043694:179012..179986 | Clytia hemisphaerica | exon |
| TCONS_00045617-exon-scaffold_10-1510915933:180587..180778 | TCONS_00045617-exon-scaffold_10-1510915933:180587..180778 | Clytia hemisphaerica | exon |
| TCONS_00045617-exon-scaffold_10-1510915933:180121..180193 | TCONS_00045617-exon-scaffold_10-1510915933:180121..180193 | Clytia hemisphaerica | exon |
| TCONS_00045617-exon-scaffold_10-1510915933:179012..179986 | TCONS_00045617-exon-scaffold_10-1510915933:179012..179986 | Clytia hemisphaerica | exon |
| TCONS_00045617-exon-scaffold_10-1491911889:180587..180778 | TCONS_00045617-exon-scaffold_10-1491911889:180587..180778 | Clytia hemisphaerica | exon |
| TCONS_00045617-exon-scaffold_10-1491911889:180121..180193 | TCONS_00045617-exon-scaffold_10-1491911889:180121..180193 | Clytia hemisphaerica | exon |
| TCONS_00045617-exon-scaffold_10-1491911889:179012..179986 | TCONS_00045617-exon-scaffold_10-1491911889:179012..179986 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_10 | supercontig | scaffold_10:179012..180778 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR020846 | MFS_dom |
Blast
The following BLAST results are available for this feature:
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