TCONS_00045608 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00045608
Unique Name	TCONS_00045608
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	600

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_10:51555..57612-

transcript sequence

>TCONS_00045608 ID=TCONS_00045608|Name=TCONS_00045608|organism=Clytia hemisphaerica|type=transcript|length=600bp
gtcTGATATACCATTAATGTGCTTTAAAAACACCACCAAAAGGATTCAAA
AGTGCCGAAAAAGCGGTTTTAGTTTTTACCCACGTGGTTGTTTTTCATCA
CTTACAATTGATGGTGCGAAGAAGgaATATCAATGAAGTCGAGAAATGGA
AATATCAGTCAGATGAATATGTAGTCCCTAAAAGGCGGGGAACCGCCCCC
GGCGTCTCGAACAAAATGTCAAAATCGAAATCTGACTCAGCTGTCCTGAG
ACCGAAGAACCATCAATTGGAACCCTTATCTTCTAATAGGAAAATGTCTT
CCTCACCACCTCTACCAAGTCATAACAATGATACGTACCTTGAATCCCTG
ACGTTGTCCGCTCTGAAACGTATTCCTGATACAGAATTTAAACGCACTAC
TAGACGTACTACACCGACGATTAAACAAGAAGTTCTGACGCCTGATAAAT
TAAACACGACTACCGATAGTGCTCCGGTGTCAGGCAACGACGTACCGACT
CTTGATACTACTAAGCAATTTTTTCTTGATCTTTGCATCGAAGGAAAGAC
TCTGAATTGGAATCCAATCCTACCTTTGTCGACAAATTTGGTAAGCTTTT

Run BLAST on NCBI

transcript from alignment at scaffold_10:51555..57612-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00045608 ID=TCONS_00045608|Name=TCONS_00045608|organism=Clytia hemisphaerica|type=transcript|length=6058bp|location=Sequence derived from alignment at scaffold_10:51555..57612- (Clytia hemisphaerica)
GTCTGATATACCATTAATGTGCTTTAAAAACACCACCAAAAGGATTCAAA
AGTGCCGAAAAAGCGGTTTTAGTTTTTACCCACGTGGTTGTTTTTCATCA
CTTACAATTGATGGTGCGAAGAAGGTATTTTTCTTTTACCTCCTAGGTAT
TTTGAATTTCCTATCATTTCTTCACTAGAATAAGCGAATACTAATTGAAC
GAATAACTCATAAAGTTAATACGGGAGATCAAAGCTTCCATCTTTATTTT
TGTAGATTGAATTAAATGAAATTTACAATATTGATAAATATAGAAGAAAG
CCAAATGATTCAATAAATAGAATGATGTATCATAAATTAAATATAAGTTA
CAATTGACTAAAACTAGTAGGCCTATTCTATATCACCTAATAATCATACA
CTATTTCCTACTATTCAGTAAGATTATTCAATCTTTCTAATTTATTCACT
GCCGTAATTTTTTCTGTATAAGACAGCAATTTCATAGGGCAACGTCGTCA
GAGGATCTCCTGACTTTCCTATGGTGATGCCATTCAGGTGAATGAAGAAA
TCTTGATCCTCAAAAGTGTCAGGGTTAGCATGGCCGATTCGAGGAATGAG
CGCGTTCTCGATTCCATAGTAATTTTTGGTATCTTCTCGAAATAGTACCG
GTAGATTAATACTCACATAACAGCACATCGATCTCTTGAAAAAGAAAGTT
ACATTCTGTAAAACTTTTGTTCATTATATTCTTACTTTCAATGATATTTC
AATGATTCTATACGCATGTTGCAAAGTAACATATTAGATGCCCGGGGCAC
TGACCTTGACGGCCGATGGGGGCGTGCCGCTGTAGTTTGAGAAGTTGACC
CTGTCAGATATGAATTTTTGATAAAATTTGGACCCTATCAGAACGAAAAA
TTGAAATTTTTCTTATTTCCAGTTAATTTGGGACCCTGTTAGATATCTTA
AGAGTCTTAAAAAGGGACTCTGACCAATGTCACGTCCCCATATCCAATTT
TGCCTAATTGACCCACTCCCCTGATTCAATTAGCCGAATTATGCTTACCT
GTTCACCATTTGCAAGGTTTGGGTATATTTCAATCAGAATTTTGACGGAT
ATGTGATCCTTGATCAGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNGCGGGAGTTTGGGTTTCTCTCAGACTTTAAGGAGAATTTACTCTTTC
TAGTGCTGGAACTATACCGCGGAAATATGATTGTTGTCATTTTCTCACAA
CGTCCCTTATTTCTCTCCGTCCCAGGACTCTTTGGGATGATACCTCAAAG
AGCATCGATTTTATCAGAAAGGGTACGAATTTGTATCTTTAAGGTATCAA
AGGTAGCGAAGCTCCATAGACACGATTAGGCAAGAATCATAGACGCGATT
AAAAATGCCTCTAAAGGTAAAATTTGTAGATAATTCCATATATTGAAAAA
AAAGGTGAGCAAAACATTAATAATACCTCGAAGAACTTCGATAGACCCAA
GTACATCTCCATCGGGAATGGGATCATCTGCAACTTGTGATAACGGTTTC
TCCAGGCGCCATTTCTCGACTTAATTGATATTCCTAAAAAAGTAAAAATT
CAATACTTAATTTTTTGGCAAATTTCATCATGAATATTTGTGACCGCCTT
AAATGGCGTAGTATTTTGAGTAAAATTTGATAGTGTTTTTTTTTTTTTTC
TGTCAAACTATTGTGCTGTGATCCTCAGCTTCACTGAGACCTAGTCCTAT
ATTATAGGAAGGTATATATTATTATTATATTATATTATTATCATCATGAA
TATTTTTAGAGTATATTCTTAAAAAAGCTTCTATATGACAAATTGAACGC
AAACAAAAAGGGTCACAATTTCAGTCACGTGATCAAAAAGAAAACAAGCA
ACATGCTAAACGGACCTACCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNATACTGTATTTTAATAGCAAGGT
AGATGATCTTCTTGTCTTCGTGGTTGATTTTTAAGCTAACAGGATTAATA
AAACGATATATAGCCTAAGGGACTTGTATACAGTGATGCTATCCAATTCG
TTTTTCATGCGGAATCGGATTTACATCGAATGTGGGAGTGTATCAAATAT
TGGGAAGTATCCTTAAACCGATAAACACGAATTATAGAGCTAATTAAAAT
TTACACTTTGTGCCGCAAAATATATATAATTTTAAAGAAAGCCAGACACT
TGGTACCCGCGGTACATCTTATTTTTGTTTAGTTAATCCATAATAATTTC
GTTTTAGCCCCAATCAACGAACCAGTACAGGATGAAGAACAACTCATTGA
TGAACAACTTGACGAACAACGAGTACGGAGTGAAGAACAACTCATCGATG
AACAACTCAACGAACAACCAGTACGGCGTGAAGAACAACTCATCGATGAA
CAACTCGACGAACAACAAGTACGGAGTGAAGAACAACTCATCGATGAACA
ACTCGAAGAACAACCAGTACAGCGTGAAGAACAAGTCATCGATGAACAAC
TCGACGAACAACAAGTACGGCGTGAAGAACAAGTCATCGATGAACAACTC
GACGAACAACAAGTACGGCGTGAAGAACAACTCATCGATGAACAACTCGA
CGAACAACCAGTACGTCGTGAAGAACAACTCATCGATGAACAACTCAATG
AACACCAATTACGGCGTAAAGAACAACTCATCGATGAACAACTCGACGAA
CAAGTGAAGGGTAATGGTAAAGGTCTATGCTAATTACTTTGGAAAGTTTT
GACATTCTATTACCCATATAATTGACAATGAAAACGAATTGTTACGTTAC
GTTTCAAAATATTTTTTGCGTTGAAAACACGCTTTTTGGACCTACCGGGA
GGTCCTTTAATTTGACCGTTGTCCGTTCGTCTGTTACAAGCTTTTCTCGG
GATTGGCTCATTAGTTTTTTTTAATTTTTTGCTACAATGATACAAAATAG
CAATACCTGAAAAGTGACGGAGCCCGATTTTTGTAAAAAAGTTTTTGGGC
CAGCCAAAAACTACCTAAAAATAAGGTTTTTTGGACTTTGTGCAAAATTG
CTTCATTAGTTTTTCCTGATTTTTGGCAGAAAGAATGAGTGCAAGGTACC
CTAAAATGTGGCTGAAGTAATTTTTCTCGGAAAATTTTTTTTCGTCGTCA
AATACGGATTTTTGCAAATTTGGGCCAAAAACTACGTAAAAATAAGGTTT
TTTGGACTTGGTGCAAAATTGCTTCATTAGTTTTTCCTGATTTTTGGCAG
TGCAAGGTACCCTAAAATGTGGCTGAAGAAATTTTTCTCGGAAAATTTTT
TTTCGTCATAAAATACAGATTTTTGTTTTTTGGGGAAATTCCCTTTTACC
ATTTTCTTGTTAGCAGCTTTTCTCGGGATTGGATTGATATTTTTTTCTGA
TTTTTTGTACTTTGATGTAATATGGTAATATTTAAAATCTGATGAAGTCC
GATTTTCAAAAAATAATTTTTTGGGCAAATTTGGGCCAAAATGTGCCTAA
AAATGGGGTTTTCTGGACTTTGTGTGTGTGAAATTGCTTCATTAGTTTTT
TCAAATTTTTTGGACAAAGATAAAAGGCAAGGTTCTCTAAAAAGTGACTG
AAGCCTTTTTTTCCGGAAAATTTTCTTTGGCCGTAAAACTCAGTTTTTCT
TTTCTCGAGATTGGCTTGGTGTTTTTTTCTTATTTTTTGCATCNATTTGG
GGAAACTCCCTTTTGTCATATTTAGGGAAAATGAGCATTTCTCGTGATTG
GCTTGGTGTTTTTTTCTTATTTTTTGCATAGTGCTATAAAATGGTAATAT
TTAATTTCTGATGGAGCCTGATTTTCGAAAAAATAANTTTTTTTTTGCAT
AGTGCTATAAAATGGTAATATTTAATTTCTGATGGAGCTTGAGTTCGAAA
AAGTAATTTTTTGAGCAAATTTGGGCAGGAAAGTGCCTATATTCAAGCTG
CTCATTACACTTTCTCACTCTCTTGCTATTTGTCCTATTTTTATCTGATT
TTTATCACCAGGTAGGTCCGTTTAGCATGTTGCTTGTTTTCTTTTTGATC
ACGTGACTGAAATTGTGACCCTTTTTGTTTGCGTTCAATTTGTCATATAC
AAGCTTTTTTAAGAATATACTCTAAAAATATTCATGATGAAATTTGCCAA
AAAATTAAGTATTTGAATTTTTACTTTTTTAGGAATATCAATGAAGTCGA
GAAATGGAAATATCAGTCAGATGAATATGTAGTCCCTAAAAGGCGGGGAA
CCGCCCCCGGCGTCTCGAACAAAATGTCAAAATCGAAATCTGACTCAGCT
GTCCTGAGACCGAAGAACCATCAATTGGAACCCTTATCTTCTAATAGGAA
AATGTCTTCCTCACCACCTCTACCAAGTCATAACAATGATACGTACCTTG
AATCCCTGACGTTGTCCGCTCTGAAACGTATTCCTGATACAGAATTTAAA
CGCACTACTAGACGTACTACACCGACGATTAAACAAGAAGTTCTGACGCC
TGATAAATTAAACACGACTACCGATAGTGCTCCGGTGTCAGGCAACGACG
TACCGACTCTTGATACTACTAAGCAATTTTTTCTTGATCTTTGCATCGAA
GGAAAGACTCTGAATTGGAATCCAATCCTACCTTTGTCGACAAATTTGGT
AAGCTTTT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_029162	XLOC_029162	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00045608-exon-scaffold_10-1575043694:57489..57612	TCONS_00045608-exon-scaffold_10-1575043694:57489..57612	Clytia hemisphaerica	exon
TCONS_00045608-exon-scaffold_10-1575043694:51555..52030	TCONS_00045608-exon-scaffold_10-1575043694:51555..52030	Clytia hemisphaerica	exon
TCONS_00045608-exon-scaffold_10-1510915933:57489..57612	TCONS_00045608-exon-scaffold_10-1510915933:57489..57612	Clytia hemisphaerica	exon
TCONS_00045608-exon-scaffold_10-1510915933:51555..52030	TCONS_00045608-exon-scaffold_10-1510915933:51555..52030	Clytia hemisphaerica	exon
TCONS_00045608-exon-scaffold_10-1491911889:57489..57612	TCONS_00045608-exon-scaffold_10-1491911889:57489..57612	Clytia hemisphaerica	exon
TCONS_00045608-exon-scaffold_10-1491911889:51555..52030	TCONS_00045608-exon-scaffold_10-1491911889:51555..52030	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_10	supercontig	scaffold_10:51555..57612 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.67049	2.41949	0.982986	0.457252	65.3736	63.6783	42.1222	59.4788	22.9889	32.3037	27.6109	23.9306	26.1488	29.9273	4.78625	4.77276	4.35408	5.83305	1.69378	3.01669	2.58508	3.15398	2.98376	5.72519	53.9973	88.8367	0.827926	0.809702	2.97501	4.07786

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00045608 vs. Swiss-Prot (Human)

BLAST of TCONS_00045608 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

You are here

TCONS_00045608 (transcript) - C. hemisphaerica