TCONS_00045600 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045600
Unique NameTCONS_00045600
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1249

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045600 ID=TCONS_00045600|Name=TCONS_00045600|organism=Clytia hemisphaerica|type=transcript|length=1249bp
CTTTTTGTTACATCGGCGCCCCATCATATAAGTTATGTAAATTCTCGCGG
CGTGCGATTTTTCATAACAGATAAACACAAACTTGACTTGGACTGCAGAA
CATAACCAGAAAGAAAGACAGAGAAGAGCTacaagtaaaaaaagaattta
accAGAAGCTGGTAACTATGGCAAGTCTAATGAGGCCTTCTTTAATCAAT
CCTCTAAAGGCTGCAACAAGAAGTATTCAAACAAGTGCTCCTGTTGGCGT
TACAAAGTCATTCAAAATTTACCGATGGGATCCAGAAAAGCCTGGTGACA
AACCAAAGCTTCAAAACTATGATGTTGACATGGATAACTGTGGTCCCATG
GTCCTTGATGCTCTTTTGAAGATCAAGAATGAGCAAGATCCTACTTTGAC
CTTTAGGAGATCTTGTCGAGAAGGAATCTGTGGTTCATGTGCAATGAACA
TCAATGGTACAAACACCCTTGCTTGTTTGTGTAAGATTGATACTTCTTCc
aagaaaaatgtcaaaatttaccCATTACCTCACATGTATGTTGTCAAAGA
TTTGGTCCCTGACATGAGCAATTTTTATGAGCAGTACCGCTACATTGAGC
CATACCTAAAGAGGGATACGCCCGCCCCTGATGGAAAAGAGCACATTCAA
TCGATCAAAGATCGTGCTAAGCTTGATGGTTTATATGAGTGTATCCTCTG
TGCTTGCTGCTCTACATCTTGCCCAAGTTATTGGTGGCACGGTGATAAAT
ACCTTGGACCAGCCGTTTTGATGCAAGCATATAGATGGATGATTGACAGC
CGTGATGAACATCAACAAGAAAGATTGGACAGATTGAACAACAAGTACTC
AGTCTATAAATGTCACACAATCATGAATTGCACCAGAACTTGCCCTAAAG
GACTAAATCCTGGTTTAGCAATTGGTGAGGTCAAGAAAATGATTGCACAA
AGCAATTAAATTAAGAAAAGCCAACACTTGGGAACACTtggataattttt
attttcaaacagaCTGTTTTTATGTTATTTTGTGTATTAATATTAATAAT
TGTAATGAAAACACCACTTTGtgtatatctttttttttctctagcAGGTT
GCTTGATACCACTATCATAGCTTAACCACAGATGATCTACTGTATCGAAC
ATTAGGAGTTTTTGTACCCTTGATCACAAGATCTTATGTTTTTTACACAG
GTACTACCAAAAcatggtctaatgtcaacaccgcccgacaccctttttt
Run BLAST on NCBI

protein sequence of TCONS_00045600-protein

>TCONS_00045600-protein ID=TCONS_00045600-protein|Name=TCONS_00045600-protein|organism=Clytia hemisphaerica|type=polypeptide|length=263bp
MASLMRPSLINPLKAATRSIQTSAPVGVTKSFKIYRWDPEKPGDKPKLQN
YDVDMDNCGPMVLDALLKIKNEQDPTLTFRRSCREGICGSCAMNINGTNT
LACLCKIDTSSKKNVKIYPLPHMYVVKDLVPDMSNFYEQYRYIEPYLKRD
TPAPDGKEHIQSIKDRAKLDGLYECILCACCSTSCPSYWWHGDKYLGPAV
LMQAYRWMIDSRDEHQQERLDRLNNKYSVYKCHTIMNCTRTCPKGLNPGL
AIGEVKKMIAQSN
Run BLAST on NCBI

transcript from alignment at scaffold_10:101541..103470+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045600 ID=TCONS_00045600|Name=TCONS_00045600|organism=Clytia hemisphaerica|type=transcript|length=1930bp|location=Sequence derived from alignment at scaffold_10:101541..103470+ (Clytia hemisphaerica)
CTTTTTGTTACATCGGCGCCCCATCATATAAGTTATGTAAATTCTCGCGG
CGTGCGATTTTTCATAACAGATAAACACAAACTTGACTTGGACTGCAGAA
CATAACCAGAAAGAAAGACAGAGAAGAGCTacaagtaaaaaaagaattta
accAGAAGCTGGTAACTATGGCAAGTCTAATGAGGCCTTCTTTAATCAAT
CCTCTAAAGGTNAAGTTCATTTATGTTCATGGTCTCTGTTGCAGGAAATG
TTTGCTCATTTGTGTTGTTAAATGCTGTGTGCTCAGCTGGTTAGGCTAGG
TGGTGCAGCCTTTTTATTGTGAAATAAAAGTAAGAAAGcagtaataaaaa
aaacagtttaCCGGCGTTGAAAGACAATTTCCATTTAATTGTTTGATTTT
CCTGGTCATATCTTTCTTTTCCTTCTCAGAAAAGGAGCTGAGCATGATGT
TTTTCTTGACAGTAGTCATTATGAGGCTCTATGGTATTTATAACAGCATT
CAATCGTGTTAAATGAAAGCTGAGGTTTCCATTCCTGTCCAAGcaagttt
ttttgaatttttgaaataagcACGAGCAgaaactactttcgttttcaaat
ttatggCCAAAAACGACGCATGCGCAAGTTTTGGCGGTAGATATTAAAGC
TTCTCAGACGCTAGATTTTCCCGCCTGTAAATCTTTTTGTTACATCGGCG
CCCCATCATATAGGTTATGTAAATTCTCGCGACGTGCGATTTTTCATAAA
CAGAAAAACACAAACTTTTCTTGGACTGCAGAACATAATCAAAGAAAGAC
AGAGAAGAGCTacaagtaaaaaaagaatttaaccAGAAGTTGGTAACTAT
GGCAAGTCTAATGAGGCCTTCTTTAATTAATCCTCTAAAGGCTGCAACAA
GAAGTATTCAAACAAGTGCTCCTGTTGGCGTTACAAAGTCATTCAAAATT
TACCGATGGGATCCAGAAAAGCCTGGTGACAAACCAAAGCTTCAAAACTA
TGATGTTGACATGGATAACTGTGGTCCCATGGTCCTTGATGCTCTTTTGA
AGATCAAGAATGAGCAAGATCCTACTTTGACCTTTAGGAGATCTTGTCGA
GAAGGAATCTGTGGTTCATGTGCAATGAACATCAATGGTACAAACACCCT
TGCTTGTTTGTGTAAGATTGATACTTCTTCcaagaaaaatgtcaaaattt
accCATTACCTCACATGTATGTTGTCAAAGATTTGGTCCCTGACATGAGC
AATTTTTATGAGCAGTACCGCTACATTGAGCCATACCTAAAGAGGGATAC
GCCCGCCCCTGATGGAAAAGAGCACATTCAATCGATCAAAGATCGTGCTA
AGCTTGATGGTTTATATGAGTGTATCCTCTGTGCTTGCTGCTCTACATCT
TGCCCAAGTTATTGGTGGCACGGTGATAAATACCTTGGACCAGCCGTTTT
GATGCAAGCATATAGATGGATGATTGACAGCCGTGATGAACATCAACAAG
AAAGATTGGACAGATTGAACAACAAGTACTCAGTCTATAAATGTCACACA
ATCATGAATTGCACCAGAACTTGCCCTAAAGGACTAAATCCTGGTTTAGC
AATTGGTGAGGTCAAGAAAATGATTGCACAAAGCAATTAAATTAAGAAAA
GCCAACACTTGGGAACACTtggataatttttattttcaaacagaCTGTTT
TTATGTTATTTTGTGTATTAATATTAATAATTGTAATGAAAACACCACTT
TGtgtatatctttttttttctctagcAGGTTGCTTGATACCACTATCATA
GCTTAACCACAGATGATCTACTGTATCGAACATTAGGAGTTTTTGTACCC
TTGATCACAAGATCTTATGTTTTTTACACAGGTACTACCAAAAcatggtc
taatgtcaacaccgcccgacaccctttttt

Coding sequence (CDS) from alignment at scaffold_10:101541..103470+

>TCONS_00045600 ID=TCONS_00045600|Name=TCONS_00045600|organism=Clytia hemisphaerica|type=CDS|length=1584bp|location=Sequence derived from alignment at scaffold_10:101541..103470+ (Clytia hemisphaerica)
ATGGCAAGTCTAATGAGGCCTTCTTTAATCAATCCTCTAAAGGCTGCAAC
AAGAAGTATTCAAACAAGTGCTCCTGTTGGCGTTACAAAGTCATTCAAAA
TTTACCGATGGGATCCAGAAAAGCCTGGTGACAAACCAAAGCTTCAAAAC
TATGATGTTGACATGGATAACTGTGGTCCCATGGTCCTTGATGCTCTTTT
GAAGATCAAGAATGAGCAAGATCCTACTTTGACCTTTAGGAGATCTTGTC
GAGAAGGAATCTGTGGTTCATGTGCAATGAACATCAATGGTACAAACACC
CTTGCTTGTTTGTGTAAGATTGATACTTCTTCcaagaaaaatgtcaaaat
ttaccCATTACCTCACATGTATGTTGTCAAAGATTTGGTCCCTGACATGA
GCAATTTTTATGAGCAGTACCGCTACATTGAGCCATACCTAAAGAGGGAT
ACGCCCGCCCCTGATGGAAAAGAGCACATTCAATCGATCAAAGATCGTGC
TAAGCTTGATGGTTTATATGAGTGTATCCTCTGTGCTTGCTGCTCTACAT
CTTGCCCAAGTTATTGGTGGCACGGTGATAAATACCTTGGACCAGCCGTT
TTGATGCAAGCATATAGATGGATGATTGACAGCCGTGATGAACATCAACA
AGAAAGATTGGACAGATTGAACAACAAGTACTCAGTCTATAAATGTCACA
CAATCATGAATTGCACCAGAACTTGCCCTAAAGGACTAAATCCTGGTTTA
GCAATTGGTGAGGTCAAGAAAATGATTGCACAAAGCAATTAAATGGCAAG
TCTAATGAGGCCTTCTTTAATCAATCCTCTAAAGGCTGCAACAAGAAGTA
TTCAAACAAGTGCTCCTGTTGGCGTTACAAAGTCATTCAAAATTTACCGA
TGGGATCCAGAAAAGCCTGGTGACAAACCAAAGCTTCAAAACTATGATGT
TGACATGGATAACTGTGGTCCCATGGTCCTTGATGCTCTTTTGAAGATCA
AGAATGAGCAAGATCCTACTTTGACCTTTAGGAGATCTTGTCGAGAAGGA
ATCTGTGGTTCATGTGCAATGAACATCAATGGTACAAACACCCTTGCTTG
TTTGTGTAAGATTGATACTTCTTCcaagaaaaatgtcaaaatttaccCAT
TACCTCACATGTATGTTGTCAAAGATTTGGTCCCTGACATGAGCAATTTT
TATGAGCAGTACCGCTACATTGAGCCATACCTAAAGAGGGATACGCCCGC
CCCTGATGGAAAAGAGCACATTCAATCGATCAAAGATCGTGCTAAGCTTG
ATGGTTTATATGAGTGTATCCTCTGTGCTTGCTGCTCTACATCTTGCCCA
AGTTATTGGTGGCACGGTGATAAATACCTTGGACCAGCCGTTTTGATGCA
AGCATATAGATGGATGATTGACAGCCGTGATGAACATCAACAAGAAAGAT
TGGACAGATTGAACAACAAGTACTCAGTCTATAAATGTCACACAATCATG
AATTGCACCAGAACTTGCCCTAAAGGACTAAATCCTGGTTTAGCAATTGG
TGAGGTCAAGAAAATGATTGCACAAAGCAATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029157XLOC_029157Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045600-proteinTCONS_00045600-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045600-exon-scaffold_10-1491911889:101541..101749TCONS_00045600-exon-scaffold_10-1491911889:101541..101749Clytia hemisphaericaexon
TCONS_00045600-exon-scaffold_10-1510915933:101541..101749TCONS_00045600-exon-scaffold_10-1510915933:101541..101749Clytia hemisphaericaexon
TCONS_00045600-exon-scaffold_10-1575043694:101541..101749TCONS_00045600-exon-scaffold_10-1575043694:101541..101749Clytia hemisphaericaexon
TCONS_00045600-exon-scaffold_10-1491911889:102431..103470TCONS_00045600-exon-scaffold_10-1491911889:102431..103470Clytia hemisphaericaexon
TCONS_00045600-exon-scaffold_10-1510915933:102431..103470TCONS_00045600-exon-scaffold_10-1510915933:102431..103470Clytia hemisphaericaexon
TCONS_00045600-exon-scaffold_10-1575043694:102431..103470TCONS_00045600-exon-scaffold_10-1575043694:102431..103470Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:101541..103470 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
286.553	289.287	348.69	346.484	203.305	153.617	140.938	147.821	173.96	161.686	144.22	150.608	98.7882	93.8276	84.4793	101.59	196.767	203.639	55.9667	77.7741	382.152	403.049	184.147	189.991	164.6	157.991	233.682	221.021	176.101	146.793
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR025192Succ_DH/fum_Rdtase_N
IPR012675Beta-grasp_dom
IPR004489Succ_DH/fum_Rdtase_Fe-S
IPR0179004Fe4S_Fe_S_CS
IPR0060582Fe2S_fd_BS
IPR0178964Fe4S_Fe-S-bd
IPR0010412Fe-2S_ferredoxin-type
IPR009051Helical_ferredxn
Vocabulary: Molecular Function
TermDefinition
GO:0051536iron-sulfur cluster binding
GO:0009055electron carrier activity
GO:0016491oxidoreductase activity
GO:00515372 iron, 2 sulfur cluster binding
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO:0006099tricarboxylic acid cycle
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0006099 tricarboxylic acid cycle
molecular_function GO:0051537 2 iron, 2 sulfur cluster binding
molecular_function GO:0009055 electron carrier activity
molecular_function GO:0051536 iron-sulfur cluster binding
molecular_function GO:0016491 oxidoreductase activity
Blast
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BLAST of TCONS_00045600 vs. Swiss-Prot (Human)
Match: SDHB (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Homo sapiens GN=SDHB PE=1 SV=3)

HSP 1 Score: 385.185 bits (988), Expect = 4.386e-132
Identity = 178/247 (72.06%), Postives = 209/247 (84.62%), Query Frame = 3 
Query:  213 ATRSIQTSAPVG-VTKSFKIYRWDPEKPGDKPKLQNYDVDMDNCGPMVLDALLKIKNEQDPTLTFRRSCREGICGSCAMNINGTNTLACLCKIDTSSKKNVKIYPLPHMYVVKDLVPDMSNFYEQYRYIEPYLKRDTPAPDGK-EHIQSIKDRAKLDGLYECILCACCSTSCPSYWWHGDKYLGPAVLMQAYRWMIDSRDEHQQERLDRLNNKYSVYKCHTIMNCTRTCPKGLNPGLAIGEVKKMIA 947
            A+R  QT+A      K F IYRWDP+K GDKP +Q Y+VD++ CGPMVLDAL+KIKNE D TLTFRRSCREGICGSCAMNING NTLAC  +IDT+  K  KIYPLPHMYV+KDLVPD+SNFY QY+ IEPYLK+   + +GK +++QSI++R KLDGLYECILCACCSTSCPSYWW+GDKYLGPAVLMQAYRWMIDSRD+  +ERL +L + +S+Y+CHTIMNCTRTCPKGLNPG AI E+KKM+A
Sbjct:   25 ASRGAQTAAATAPRIKKFAIYRWDPDKAGDKPHMQTYEVDLNKCGPMVLDALIKIKNEVDSTLTFRRSCREGICGSCAMNINGGNTLACTRRIDTNLNKVSKIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKKKDESQEGKQQYLQSIEEREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDFTEERLAKLQDPFSLYRCHTIMNCTRTCPKGLNPGKAIAEIKKMMA 271
The following BLAST results are available for this feature:
BLAST of TCONS_00045600 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SDHB4.386e-13272.06Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
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