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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045595 ID=TCONS_00045595|Name=TCONS_00045595|organism=Clytia hemisphaerica|type=transcript|length=1134bp
cgtcaattatttccacgggaaagtgggtttttaaatttgcgaaagatttg
cactgcagcGACTTCTtacaaaaacgctaattttcacactattcccctga
ccactttcgttttcgttttcaaccacccagCCAACCACccaaccaaaaaa
tcggtcacgtaactctcgaacccccatctcaaaaatccataatggccccc
tCACGGCTCACTCACATTCTACGTTTAGTAATATAGACAAGTATATGGCT
GTTGAcaattattattttcaaaataacggGTAACTTCTGCCCAATCCAAG
AAAAGTTTCTGGTTATTCTTTTCATAATTAtcatttaaaagttaaaaaaa
attaagatggaTGAAACAAAGAAGATAAATATAGAATCGTGTAGAAGTGT
CAACAAAATGCTTTTCGGATACAAGATGAAAACTATAGAGCGGATGGTAT
GGAGTTTGGTATTGCTTGTTGTAATGGGAACAGGGCTCACTTTCGGATTC
ATATATTATCCTATCCATGCAGCTCTGGTGATGGGGAGTGGTACCTTGGT
TGCTGTCGTTCATAAACTGATGTTCAAACTGTTTGAGAAATCTCCCAAGA
AAAACATGTACACCAGACGATTGTTTTACTTAGgtGGAATTATACGTGGT
TTGTTGATGTGCGCCTTACTATATTTACTTAAAGAATGGTATTCATTACA
TGTGTTGGTAGTGATCACCACGTGGCATTTCACAAGTCTCTTTGTTTTGT
TAACCAAGGACATCTCATTTGACGAGGAAAGAGAGCTTGCAAGGACTAAG
GTAATGCCTCAACAAGCTTTCACTATGGAGGATGACGCAGATTCTATTCC
AACGATTAGCGGAGAGCATGCGTGGAGAGAACCACAAGAGATTCATTTCT
GTGATGGTGGTAATGGCTTTGGATTATCTCAAGATGAACATGGAGAACTG
TGTAAATATCAGTCATGAGTTCAAAACGAATTTGGTTCTAAATGAGGCAT
ACGGTTTTGTTTTGTGAAATTTCGAAGGGATAATAGTATAAATATAGTAT
ATTGCATAACGTTGAACTCCATAtaatacaccccttctcacagacccact
ggggacccttcccaatggaaaaattgtccaaaat Run BLAST on NCBI transcript from alignment at scaffold_10:31718..34706+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045595 ID=TCONS_00045595|Name=TCONS_00045595|organism=Clytia hemisphaerica|type=transcript|length=2989bp|location=Sequence derived from alignment at scaffold_10:31718..34706+ (Clytia hemisphaerica)
cgtcaattatttccacgggaaagtgggtttttaaatttgcgaaagatttg
cactgcagcGACTTCTtacaaaaacgctaattttcacactattcccctga
ccactttcgttttcgttttcaaccacccagCCAACCACccaaccaaaaaa
tcggtcacgtaactctcgaacccccatctcaaaaatccataatggccccc
tCACGGCTCACTCACATTCTACGTTTAGTAATATAGACAAGTATATGGCT
GTTGAcaattattattttcaaaataacggGTAACTTCTGCCCAATCCAAG
AAAAGTTTCTGGTTATTCTTTTCATAATTAtcatttaaaagttaaaaaaa
attaagatggaTGAAACAAAGAAGATAAATATAGAATCGTGTAGAAGTGT
CAACAAAATGCTTTTCGGATACAAGATGAAAACTATAGAGCGGATGGTAT
GGAGTTTGGTATTGCTTGTTGTAATGGGAACAGGGCTCACTTTCGGATTC
ATATATTATCCTATCCATGCAGCTCTGGTGATGGGGAGTGGTACCTTGGT
TGCTGTCGTTCATAAACTGATGTTCAAACTGTTTGAGAAATCTCCCAAGA
AAAACATGTACACCAGACGATTGTTTTACTTAGGTatacttttttgataa
acaactAGTAAATTATTGTAGCGAGATCAGCTGTCCTTACTTTTGGGCAC
TTTAAGACAGAAGGGGTGAAAAGACTTTCTTATGATGCTTAATAGCTAAA
CATTCACAAAGTATTGAATCATGCTATTGAAAGTCATGGTGAGAAAATGA
CTATACTCTTTTTTAAATTGAAAGTTAATTTAATTtgaaatctcgaaaaa
tgggacttttcagggacttttcacacttttttctattgttttcaagcaaa
ggttcaaaatttcaaagtggcataacttgagttaggaaaagtacaccgaa
aaatatagaggtttttcctaaagtcctagaagctatctgcaggcaaaata
tctcagaccatctgattatccctttaagctAAAGCAACTAGAAGAAGAAT
CGCATGGATATGTTTCCCCACATCAGATATTGCTATTTTGCAACATTTTC
CGCTAGATGTTTTTGTTGCTGaagaacaaaaataaatatcaaaccagttt
gatattttttctttgttgcagCAACAACATTTTCATGTTGCAATTGAGAA
TTATACAAAAACCCTCGTGTTCCCTCACCTCGAGAAGATTTTTCGAGAAg
attttttgcaacatttttatttattttaaccaatcaaattcgtTATACGA
ATAAACACAAATTAAAATCATCTTGAATCACTGTCACACGtgttctaaat
ttaattttataaattttgtttcatttgcTAGGCCCATGCGAAAGGAATCA
ATTTTCACGCAAatgcaacaatttttttttattgcaatcgcacaaaaatt
gtttccgtgtccaggttgcaaaaataaagttcgaagtcaaatcacgcttt
tacttggaatttttatgtgcttgttacatgacctttatttctgattggtt
tgaATTTATTAATACTAATAAAGtaattaaatttgatttgtaAACCAAGT
AACTCAGAGTAACTttggaataaaatcacgtgagcTTTCTCGAGTAATCA
CATTTTTTTTCACAGTTTTGACTGCActgctataattttgcaacccgtgt
attaacTACAAatggtttaaagtttaaagaatGACGTGGCATGCGTGTTA
GTTACAATGCAAGATTCTTTGAGGAACAGACTGATACTGTATGTATCACA
AGGCACAAGGTTGTTGTAGGTTGTAATAGAACAGTTATATTCAGTAGAGT
TTACATAGCTCGAACACTCACGGGAACGCAGATTTGTTCAAGATATGGAA
AATTCATGATtgttatacactttttttataagagccagttaaatttttct
gattgttttttgagcctgaaattgtttttaccttgttcttatttataggt
tataattgaggtattttaggcgttatacccaatttgtactactttgaccc
ctaaattgcttgaatttGAGTAAATTCAAGTTCGGCatagttcttatttt
tttttgcgattttgagcctcattgttcttataaaataaaaaaagagtagA
GACTTGtttgtaaggcttttttgcCTGAAAGGACCCGAAAACATTTTCGA
GTTAGGGAGACactcgagttatagaggttcgagttatggagactctactg
tatatttttacttttaggtGGAATTATACGTGGTTTGTTGATGTGCGCCT
TACTATATTTACTTAAAGAATGGTATTCATTACATGTGTTGGTAGTGATC
ACCACGTGGCATTTCACAAGTCTCTTTGTTTTGTTAACCAAGGACATCTC
ATTTGACGAGGAAAGAGAGCTTGCAAGGACTAAGGTTTTTtattaattgt
tttctttttctgttaCTTATACAATTCTAAAGAGATTATATCGTAGACAT
CTGACAAGTACAGGTATAGGAAGAAATTTGCGATGAAAGTTACACGACCT
CGGGTCGCAACAATATTTgtcttcttaaaaaaacaagctaATGTGTAacc
aaataaatattttgagtaaaactgaaATTCATCATTGCTTTCTCTTAAAT
TCCAGGTAATGCCTCAACAAGCTTTCACTATGGAGGATGACGCAGATTCT
ATTCCAACGATTAGCGGAGAGCATGCGTGGAGAGAACCACAAGAGATTCA
TTTCTGTGATGGTGGTAATGGCTTTGGATTATCTCAAGATGAACATGGAG
AACTGTGTAAATATCAGTCATGAGTTCAAAACGAATTTGGTTCTAAATGA
GGCATACGGTTTTGTTTTGTGAAATTTCGAAGGGATAATAGTATAAATAT
AGTATATTGCATAACGTTGAACTCCATAtaatacaccccttctcacagac
ccactggggacccttcccaatggaaaaattgtccaaaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045595-exon-scaffold_10-1491911889:31718..32350 | TCONS_00045595-exon-scaffold_10-1491911889:31718..32350 | Clytia hemisphaerica | exon |
| TCONS_00045595-exon-scaffold_10-1510915933:31718..32350 | TCONS_00045595-exon-scaffold_10-1510915933:31718..32350 | Clytia hemisphaerica | exon |
| TCONS_00045595-exon-scaffold_10-1575043694:31718..32350 | TCONS_00045595-exon-scaffold_10-1575043694:31718..32350 | Clytia hemisphaerica | exon |
| TCONS_00045595-exon-scaffold_10-1491911889:33985..34151 | TCONS_00045595-exon-scaffold_10-1491911889:33985..34151 | Clytia hemisphaerica | exon |
| TCONS_00045595-exon-scaffold_10-1510915933:33985..34151 | TCONS_00045595-exon-scaffold_10-1510915933:33985..34151 | Clytia hemisphaerica | exon |
| TCONS_00045595-exon-scaffold_10-1575043694:33985..34151 | TCONS_00045595-exon-scaffold_10-1575043694:33985..34151 | Clytia hemisphaerica | exon |
| TCONS_00045595-exon-scaffold_10-1491911889:34373..34706 | TCONS_00045595-exon-scaffold_10-1491911889:34373..34706 | Clytia hemisphaerica | exon |
| TCONS_00045595-exon-scaffold_10-1510915933:34373..34706 | TCONS_00045595-exon-scaffold_10-1510915933:34373..34706 | Clytia hemisphaerica | exon |
| TCONS_00045595-exon-scaffold_10-1575043694:34373..34706 | TCONS_00045595-exon-scaffold_10-1575043694:34373..34706 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_10 | supercontig | scaffold_10:31718..34706 + |
Blast
The following BLAST results are available for this feature:
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