TCONS_00045587 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045587
Unique NameTCONS_00045587
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length517

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045587 ID=TCONS_00045587|Name=TCONS_00045587|organism=Clytia hemisphaerica|type=transcript|length=517bp
aattgaaattactaCAAGAACACAAGAACTCAAACAAAATAATAACTAAT
TGGTCTAGTTGTCATGAGTAAAGGTTTGTTTTCTTCAGAAAGAGTACTGT
TGattaaaactaataaaaagatatgcaatgcaatgacttcagtAAGTCAA
TTTTCATCACTTTTAGCAACTAGTTaaatagtttgaaaaaactATAGTAG
CCAAAACTACAGTATTAAACATATCATTAAAGGTGAAGCTGAATAATAAT
TTTCCTTTCGAAGGTCTATCATTCAAATGATGAAGATATGTAAACTAAAT
TCAGAAGTCAATTTTTGTCACTTGCAAttctaaagaaagaaaagtaaCAA
TGATGTAAGTCAAAAAAAGTCTCCTAGAGTAACATTTTTTGTAATGTTTT
GTTACAAATTTACATAATATGCTTTAGCATGCCTCCCTCAGATAATTTAG
TACACACATATATATAGATCAGAATCAGCAAGTAAGTCAAAAAAGGTCTC
CTGAAACATGAAAATAC
Run BLAST on NCBI

transcript from alignment at scaffold_1:518..1034

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045587 ID=TCONS_00045587|Name=TCONS_00045587|organism=Clytia hemisphaerica|type=transcript|length=517bp|location=Sequence derived from alignment at scaffold_1:518..1034 (Clytia hemisphaerica)
GTATTTTCATGTTTCAGGAGACCTTTTTTGACTTACTTGCTGATTCTGAT
CTATATATATGTGTGTACTAAATTATCTGAGGGAGGCATGCTAAAGCATA
TTATGTAAATTTGTAACAAAACATTACAAAAAATGTTACTCTAGGAGACT
TTTTTTGACTTACATCATTGttacttttctttctttagaaTTGCAAGTGA
CAAAAATTGACTTCTGAATTTAGTTTACATATCTTCATCATTTGAATGAT
AGACCTTCGAAAGGAAAATTATTATTCAGCTTCACCTTTAATGATATGTT
TAATACTGTAGTTTTGGCTACTATagttttttcaaactatttAACTAGTT
GCTAAAAGTGATGAAAATTGACTTactgaagtcattgcattgcatatctt
tttattagttttaatCAACAGTACTCTTTCTGAAGAAAACAAACCTTTAC
TCATGACAACTAGACCAATTAGTTATTATTTTGTTTGAGTTCTTGTGTTC
TTGtagtaatttcaatt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029148XLOC_029148Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045587-exon-scaffold_1-1491911889:518..1034TCONS_00045587-exon-scaffold_1-1491911889:518..1034Clytia hemisphaericaexon
TCONS_00045587-exon-scaffold_1-1510915933:518..1034TCONS_00045587-exon-scaffold_1-1510915933:518..1034Clytia hemisphaericaexon
TCONS_00045587-exon-scaffold_1-1575043694:518..1034TCONS_00045587-exon-scaffold_1-1575043694:518..1034Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:518..1034 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.691125	1.83578	0.837844	0.604701	0	0	0	0.138642	0.194133	0	0	0.153428	0	0	0.175976	0.474775	0.605296	0.265889	0	0.0846207	2.84993	4.34896	1.05657	1.08065	0.142352	0	1.53311	1.30297	0.767095	0.886272
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045587 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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