TCONS_00045586 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045586
Unique NameTCONS_00045586
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length416

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045586 ID=TCONS_00045586|Name=TCONS_00045586|organism=Clytia hemisphaerica|type=transcript|length=416bp
GCAAACACTAATAAACTATGTCTTGTTCAAGAAAGTAAGTCACATTTTGG
CACCTTTTAAGTATAAAGTAAGTCAATTATTGTCACCCACAATCAAAAGT
AAtccttttctaaaaagatggcagcttttgtttttacatagcacctcaaa
aactttttttatgccTCATCCAAAACATCTCGTATGGTAAGTCAAATGCT
AAAGTAAGTCAAAAAAGGTCATTAACTTTAAAGTGAAATATAATAAGATA
ggggaagtcaatttttttggttttttcacAGTTATTTAGCTGATTAACAT
ACGCTACCTTTAAGACGAGCCAAAGAGTTGTAAGTCAAAATCTGTCCCCT
CCAGCAATACTTAactgcaaaattgaaaaatgtcacaaaaccccACTTTA
TTTTTGGAAGTGATCt
Run BLAST on NCBI

transcript from alignment at scaffold_1:41..456

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045586 ID=TCONS_00045586|Name=TCONS_00045586|organism=Clytia hemisphaerica|type=transcript|length=416bp|location=Sequence derived from alignment at scaffold_1:41..456 (Clytia hemisphaerica)
aGATCACTTCCAAAAATAAAGTggggttttgtgacatttttcaattttgc
agtTAAGTATTGCTGGAGGGGACAGATTTTGACTTACAACTCTTTGGCTC
GTCTTAAAGGTAGCGTATGTTAATCAGCTAAATAACTgtgaaaaaaccaa
aaaaattgacttccccTATCTTATTATATTTCACTTTAAAGTTAATGACC
TTTTTTGACTTACTTTAGCATTTGACTTACCATACGAGATGTTTTGGATG
Aggcataaaaaaagtttttgaggtgctatgtaaaaacaaaagctgccatc
tttttagaaaaggaTTACTTTTGATTGTGGGTGACAATAATTGACTTACT
TTATACTTAAAAGGTGCCAAAATGTGACTTACTTTCTTGAACAAGACATA
GTTTATTAGTGTTTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029147XLOC_029147Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045586-exon-scaffold_1-1491911889:41..456TCONS_00045586-exon-scaffold_1-1491911889:41..456Clytia hemisphaericaexon
TCONS_00045586-exon-scaffold_1-1510915933:41..456TCONS_00045586-exon-scaffold_1-1510915933:41..456Clytia hemisphaericaexon
TCONS_00045586-exon-scaffold_1-1575043694:41..456TCONS_00045586-exon-scaffold_1-1575043694:41..456Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:41..456 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.182054	0.42609	0.333133	0.427944	0.837635	1.01632	0.401639	0.272399	0	0.446433	0	0	0.292955	0	0.417895	0.12073	0	0.230272	0.754836	0.19065	0.891586	1.70012	0.284609	0.5688	0.736056	0.164228	0.755399	0.297004	1.28926	0.773876
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045586 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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