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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045576 ID=TCONS_00045576|Name=TCONS_00045576|organism=Clytia hemisphaerica|type=transcript|length=561bp
aACTATCGGTATAAATAAGGGAATATCAGAATTGGTTGGTGAATTACCGT
GAGACGGAACGTGAGGACCAGAGAACACACACGGAACACGACGATGAAAA
AGTGGAACAGACGCACGAAAATCACGAAGTCATGCGTGAACGACAACGTG
AACACAGTCATAATATGGGACGACATATGATCGAGAAGAGAActCTGGAA
AGTATAATTCGAACAAAGAAGAAAGCAAACCAATTTCTCAAGTACCGAAG
AAGGATTTGAACACAAAATGTAGTCGAAATAAAGAAGTCTAAAGTTCAAA
AGAAGTGGACCATGATAGTACCTCATATGTCAACATGTAACAAGATAATT
GAGACCTTTCTGGAGAGCTTGATTATACTCTGTTAAGCATTGATGCAGAA
ATGCCATTAGCAtcttaattaaaacttgaaccTTTTTTATTGTAAACGAG
GTCAAATTGCATCATATCACAAAATTGGACAAGTATCAGATTTTCTGAAG
ACATTAAAATTACCTGGAATGCATAATGTATAAATTGtgctgaaaagaag
aaagaaaaaat Run BLAST on NCBI transcript from alignment at scaffold_1:135677..138695- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045576 ID=TCONS_00045576|Name=TCONS_00045576|organism=Clytia hemisphaerica|type=transcript|length=3019bp|location=Sequence derived from alignment at scaffold_1:135677..138695- (Clytia hemisphaerica)
AACTATCGGTATAAATAAGGGTAAAGGGATTTATAATGACCAATCTTCAC
CTATTCCTTAAAATTAGAAATTATCACGGACTTAAGGNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNAAACGTCTTTGCAATCTTTTTGTTTACATTTTGTCTTCAT
TCACTTTCGTTTACTGTTGAAAACATAACAAAGTTTTAGCTATACTCTTA
AACCGCGTATAATAGGCGGTTAAGCCAATCAGCTTTCGAGCTGACATCAG
CATGTATTTCAGAGTATACCATGGAAGTACCAGCAACTCCGACCCCTACT
ATAACAGTCAGGAACTATTGCAAATTAGGCTATGATGGCCAAACTAGGAT
GTTCGCCTAATTAGGCTAGGATTTATATCCTAGTTAGGATATTAATGGCT
TAATTTGGATATATGAAATATTCAAACCTAAATATCTTGAGAACAAGTAA
AATCCGCGTCAATCTTACTATATGGACTTGTTACTTGTACTAAGAAGAGT
ATTTAAAGCGAAAAACTTTTTTCTTTTTAGAGCGGAGTGAAACGATGTGA
TTATTTTATTAAAATTTAGCTTAATTTGGCCATGATAGCCAAATTAAGCC
GATTTAAGTTCTACATGCAGCGCGCCATTTTTTGTCTGAAAAATGAAAAA
AACTTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNATCTTGAAATAATTTCGACTGTACTGCTGTATATA
TGTAAACATAATTTTGCTGAAACAGCATAATATTTAAAAACTGAATATTT
TCTCAGCCCGCTCAAATTTTACTCAAAAAACATTCGGAACTCATTCAAAT
AAATAAGAATTTGACATTTTAAGCTAAATATTGACGCAGATTTTTAAATA
CAAGTCAAAAATTGGAATTTTGTTCCTTCCAGCCTAATTAGGCTACAATT
TCTGGCTTAATTAAGCCATCGTATCCAAGTTAGGCCAGAATCGGCGAACA
TAGCCTGATTTGCAATAGTTCCTGACTGTATAAGTATAGCGCTATTCCCT
TTAAAATTTGTGGAAGCTTTTACTGCTCGACCAAAACATCCTAAACTGTT
AATAGTTATAAAAAAGGCGAAAAATGAGGGTATTGATTTTTTTTGAAAAG
TAATGTTTTAGCATTTAGAACATAACTTCTGGAGTTTATCTTTTCTTTTT
CTAATGCAAAACGATAGATTCTTTAACAGTCGATAGACCTCGAGAAAATT
AACTTCAAAGAGGGGGACTTTTTTCTGGAGCACCCGGTAGTTTTAGTGAT
AAGCAAAGGTTTTCAAAACTTTTATTCAGGTGAGCGAACTGAGTAAGTAC
TACATTGTAAGAACATCAAACGTAAACTATAAGTGCTAATCTTTAACACA
AATTGCTACCTTCGGCTTAGGGTAAAATTAGCTGGTATTATATCACCAAC
GCTTCAACTCATGTTAGAATATTTCGAATAGGAATATCAGAATTGGTTGG
TGAATTACCGTGAGACGGAACGTGAGGACCAGAGAACACACACGGAACAC
GACGATGAAAAAGTGGAACAGACGCACGAAAATCACGAAGTCATGCGTGA
ACGACAACGTGAACACAGTCATAATATGGGACGACATATGATCGAGAAGA
GAAGTAAGATCCATAGATTTATAAAGCCCGAATGGCTAGATGTCGTGCTT
TGGCTGAAAAGTGTGCCGAGGTTAGGTAGGAAATCCTACCTAGGTCTACC
TTGTCACCACGTGCCGCTTGTCGATAACAGGGTCCCAAATTTAATAATTT
GCCAGCGACACGTCCCATTCGGCTGTCAAGTTCAGTGCCCCCCCCCGGAC
CTTTGTGCACTTCAAAACTTGCCACAGCAAACACAGAGCTTTTATAGAAT
ACAGTGTGTTCCATAAAAGATTCCTCTCTAATTGATAATTTCGGCGAGTT
TTTCATGAGATACTCTGTAGAAAAGGATTCCTATGAAATTATATCCCTAG
GAATCAACAGTCAATGAGTACATATCCCTAAAAATTCTCTGAACCTAATT
TTGTAACTAATTATAACTTTTTTTCACCAATATACTTTTGTCGTTTCCAC
AACCATAATAAAAATTGAGGTAATAATGGGAGGAGAGGGCAATAACGAAC
CATTGAACCCAACTGTCCTGCCAAAAAAATAATTCACTTTTATTTTTCAG
CTCTGGAAAGTATAATTCGAACAAAGAAGAAAGCAAACCAATTTCTCAAG
TACCGAAGAAGGATTTGAACACAAAATGTAGTCGAAATAAAGAAGTCTAA
AGTTCAAAAGAAGTGGACCATGATAGTACCTCATATGTCAACATGTAACA
AGATAATTGAGACCTTTCTGGAGAGCTTGATTATACTCTGTTAAGCATTG
ATGCAGAAATGCCATTAGCATCTTAATTAAAACTTGAACCTTTTTTATTG
TAAACGAGGTCAAATTGCATCATATCACAAAATTGGACAAGTATCAGATT
TTCTGAAGACATTAAAATTACCTGGAATGCATAATGTATAAATTGTGCTG
AAAAGAAGAAAGAAAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045576-exon-scaffold_1-1575043694:138676..138695 | TCONS_00045576-exon-scaffold_1-1575043694:138676..138695 | Clytia hemisphaerica | exon |
| TCONS_00045576-exon-scaffold_1-1575043694:136593..136764 | TCONS_00045576-exon-scaffold_1-1575043694:136593..136764 | Clytia hemisphaerica | exon |
| TCONS_00045576-exon-scaffold_1-1575043694:135677..136045 | TCONS_00045576-exon-scaffold_1-1575043694:135677..136045 | Clytia hemisphaerica | exon |
| TCONS_00045576-exon-scaffold_1-1510915933:138676..138695 | TCONS_00045576-exon-scaffold_1-1510915933:138676..138695 | Clytia hemisphaerica | exon |
| TCONS_00045576-exon-scaffold_1-1510915933:136593..136764 | TCONS_00045576-exon-scaffold_1-1510915933:136593..136764 | Clytia hemisphaerica | exon |
| TCONS_00045576-exon-scaffold_1-1510915933:135677..136045 | TCONS_00045576-exon-scaffold_1-1510915933:135677..136045 | Clytia hemisphaerica | exon |
| TCONS_00045576-exon-scaffold_1-1491911889:138676..138695 | TCONS_00045576-exon-scaffold_1-1491911889:138676..138695 | Clytia hemisphaerica | exon |
| TCONS_00045576-exon-scaffold_1-1491911889:136593..136764 | TCONS_00045576-exon-scaffold_1-1491911889:136593..136764 | Clytia hemisphaerica | exon |
| TCONS_00045576-exon-scaffold_1-1491911889:135677..136045 | TCONS_00045576-exon-scaffold_1-1491911889:135677..136045 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_1 | supercontig | scaffold_1:135677..138695 - |
Blast
The following BLAST results are available for this feature:
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