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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045574 ID=TCONS_00045574|Name=TCONS_00045574|organism=Clytia hemisphaerica|type=transcript|length=1379bp
TAAGTCAGAAAAGATTATGATACAAATATCCAAACAAAAGTAATGACCCA
ATGAAGAAATTATCATCAAACTGGCGCTTTATCAATTCAATACTATGCAT
AGTGGTAattattttattgctttttggCGCACCATTGTTTGGACATCCCC
ATCATGAGCACTTCCAGAGCTATTTGGATCATCGTGATTTCTACATGAAT
CATTTCAACGAGATGTTGAACAGGAAGGGAGGCATGTATGATTCAAAACA
TGGTGAATATTCGGATCGCGTGGACACATACGATCACATCAATCACGAAG
ATGGACGATTTCACGACGAACGTGATGACGAACAACATGAAGGAGATCAC
GAACACGGTGAAATACAACATGAAGACAGTCACGCTGAATTTCATGCAAG
AAAACGATCCTTCAATCGGATGAAAGCAGACATGAAGAATATTATACAAA
AGGAGAAGACAGCTAAACAATTTCTACGCCTGTTACCAGCTAAAAGAAAA
CTCAAAAGGATTAAATCAGCATTTGGATGAAGGCGAACCTTATCATGTAT
CAAAGCCTTACTGAtaaaattgtcaaaatattcaaaacaaggaCATTAAC
GCATTTTGTATCTCCCAGGTGAAGAAAATATTCAGCACGAAGAACGATCA
ACGATATTTCCTGTATTCGAATCGTCAAAATATTGTTATACGTCAGTCAA
GCAGCCGGTCATGTATTATTAATCATGCGTGAACCACGATCATGAATTTG
GACAATCGCCTGACAGTTTATGGTTAATACGTACTCGCTCTAAAGGGGAA
ATGCGTTTCCTGGGACATGAAAATACACCAACATTGATAGTGAACATATA
CACAGCTTACTCTTCTTCTCTTCGGTTTCTTTGTTGTCGGTATCACCAAA
ACCTGCGTCAAGCGAAATTCCCAATGAATACATTTCAAGTTCTGCAACGT
TCCACTTGTTGATTGAAATCGAAAGAGATACATCGTCATGTTTGAACCAG
CCAGTATATCACCGAAAATCCAAACTTTCGATTGCGCAGACGCTCTGGTA
CAGGCTAATGAAGAAGTCCAAAGCTAATACGGATTCTTCTTCTCTCTAAC
ATTTTCTCGGTGTAATATCCATGTAACACGCATATCATGTATGTAATATA
TAACTTTATAATATCAAGTATAGTGATAACAGGTAGAGTCCAAATGTTTT
TGATAGGGAATCTCTTTcggtgaattatttttcaaactgTTGGTGAACAA
ACGTAAAGAAAACGTTATGAAGATACACAATGTGGCCACCAGTAAACAAT
AATACGAAGTAGCCGGATTCCAAGGCTCCTTCAGAAATGTCACAGCATAG
ACACCAGATACCGTCATACTTAGAAGAGC Run BLAST on NCBI protein sequence of TCONS_00045574-protein >TCONS_00045574-protein ID=TCONS_00045574-protein|Name=TCONS_00045574-protein|organism=Clytia hemisphaerica|type=polypeptide|length=159bp
MKKLSSNWRFINSILCIVVIILLLFGAPLFGHPHHEHFQSYLDHRDFYMN
HFNEMLNRKGGMYDSKHGEYSDRVDTYDHINHEDGRFHDERDDEQHEGDH
EHGEIQHEDSHAEFHARKRSFNRMKADMKNIIQKEKTAKQFLRLLPAKRK
LKRIKSAFG Run BLAST on NCBI transcript from alignment at scaffold_1:129476..135551- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045574 ID=TCONS_00045574|Name=TCONS_00045574|organism=Clytia hemisphaerica|type=transcript|length=6076bp|location=Sequence derived from alignment at scaffold_1:129476..135551- (Clytia hemisphaerica)
TAAGTCAGAAAAGATTATGATACAAATATCCAAACAAAAGTAATGACCCA
ATGAAGAAATTATCATCAAACTGGCGCTTTATCAATTCAATACTATGCAT
AGTGGTAATTATTTTATTGCTTTTTGGCGCACCATTGTTTGGACATCCCC
ATCATGAGCACTTCCAGAGCTATTTGGATCATCGTGATTTCTACATGAAT
CATTTCAACGAGATGTTGAACAGGAAGGGAGGCATGTATGATTCAAAACA
TGGTGTAAGTTGTCTTAACTCGAAGCTTGGCGACCACATTTCGTCTTACC
TATTTTTAAGTCATGGACAGAAAAGTCTTTTGCTTTAAAGATCAATTCGA
AACTAGATTATAAGAACATTTAGGCTGAAATTTGAGTCTGCTAAATCACG
CGCCTAGCGCGTCCTATATTTTGAACGCGTCCACGCGCCCTAGTGCCCAA
GCGCCTCACCCGCCTCACGCGGCAAATTTTTTCACGCGCAAATATTCTTC
ACACACCTTAGAATTTTCACGCGCCTTTTAATTTTTTACGCACCGCCCTA
AGATGCCCTTGCATTTTTCATGTTCTTATTTTATCTTAATCTTACCCCCA
GAAATTGTTTCCAGTTTCTGTTTGCGTGAGTCACGCGAGACGCGTGGGCG
CGTTCCAAATATAGGGCGCGCTAGGCACGTGAGGCGCGTGATTTAGCAGA
CTCAAATTTCAGCCTAAATGTTCTTATAATCTAGGTTCGAAATAGTTCGA
CTCCTGAAATTCGGGAGTGAAATAAGATTGCCGTAAGAACATGACTAGCC
TGAGAATTAATAGATTTTAAGAACGCTAATGAAAACATTTTTAACGCTCA
AAATTTGGGTCTTTTGAATGAGCATGGTTCAGCCAAAATTAAGACGTTGT
TATAAAAAAATCGTATTCTGGACAACTTTGGTCAAACAAAAAACGAAGAG
AATAAAGGTAGCAAATAAGTCGTCTGAAGAGGAACTTTGACGAGAAAAAA
CTCTTAAGGGTCATAGTGAAAAATCAATTTCAGAATTTGAAGATAAAACC
TCATGTTTTCGCTTCTTTGACATGTTTAAGAACAAACTGCTTTTGAAAAA
ATGAATTTAAGAGTAATTAAGGAATAAGTGTGGCATGGACCTTAATAAAA
CGTCAAAACGACGCTATTCATATATTTTTCACAAAAAAAGCCTAATCTCC
TTGGGGAAATCATTTTATTGTTTCAAACTTTTTTTTAAGTTAATGACAAA
TAATTTCTTTGTTTAGATTTTTTCGGAAAAATTTTCTATTCGGCTACATC
CCAAGTTATACAGCTGTTTTTGTATGGAAATTTAGTGGAGAAAATTGTTT
TTTGGAGATTCTAAAGGAAAGATACTTCCACAAAAATTTTCCGAAATTTT
ATTTTTAGATACTAAATAGATACATCACCTGAACCAAAAAAAATTCCAAA
ATGTTTGATTTTTACCGAGATTAGGGCTTTGAATTTGAAAGGTGAAATAC
TCTTCTTCGAAAAACTCTTCGTTTTCTTCTTCATTTAGTTTTTTCATCTC
AATTTTTCGATTTTTAAATTCTAAAAAGGTAGGTTTAACAAGACATATAA
AAAAAGTTATACATTAATCTTTTTAAAATGCAGAAATTGCCATTTAAATT
GGTGTAAAATCGATGTCCAGAGCTCTTAAATCAAGGGTTTTGGAAAATGA
CAGGAGTCGCATTGTAATTTTCTGCAAAAGCCCTTCAAGTTACAAAACTT
AACTAGTGCTATAATGATATGAACATTGAAAAGGAAAAAGACTTACTTGT
CATCGAGAGTGTGGTTAATAGTCATGCGCAAGTTATCCTGTATATTGTTT
TAACCAATGATTGACTAGCTTTACATTACCTTTATGATCCATGATTATTA
TCATTATAGAATGTTTTATTTTGTTAACCTGAAGAAAGAGGTAAAATAAT
TTCTTTATTTTGAGAACAGAACCTTATCCAAGAAGGTGATCGAAAACACA
GGGAAAAATACTTCAAGATATAGGTTGTAAACTTTTAACCCGGGGAAAGA
GAAGGTTTCAGTTAAAAGTCATTTACGATTATCCAAATGAAAATCAAGGG
ACTATAAAGTGAGCTACGTCGATTTCTCAGGCCTGGAGGAACAGTGGGGA
GGCTGAAGGCTCAAATTAAAATAAAATTCGCTAGAAATTTGAGAAAAATC
TCATTTGCTCAAAAGTAGGGAGGCTGATGTCTCCCCAGTCTCCCCGCTCC
CTGTACTGTTTCTTACAGCCTATGAGCATGTTCATAATAAAGAAGTATTT
TAGGAATGAAAGCTGATCTACAGTTCATATTAGATAAAGCAAAAGAGTCC
TTGCTTCTGAGACATAGTTTTTGTTCCGGAATACACTCTTCTCGAGATGC
ATAAATTTATTGTTATCCTCGTTTTCAAACAGATTTCATTGCTATAAAAT
TACATATTCACAATAATAATTGTATTGTTTACACCTCATGAGACATTTTG
AATTTCAAGTACTTTTGTTTTAGAGTTAATGTTTGCCTTTTGGGAATTTA
AATTAGTTTAAATGTATAATTTTATAGCAATGGAATCTGTTTGAAAACGA
GGACAATTTATGCATCTCGAGAAGAGTGTATTTGCAAAGAAAGAAAAAAT
AAATCTTATTGGCTTCTCTATTATTCTCAAGGAATATTCGGATCGCGTGG
ACACATACGATCACATCAATCACGAAGATGGACGATTTCACGACGAACGT
GATGACGAACAACATGAAGGAGATCACGAACACGGTGAAATACAACATGA
AGACAGTCACGCTGAATTTCATGCAAGAAAACGATCCTTCAATCGGATGA
AAGCAGGTAATGATTCATACATGTTTAGTATTCTATTGTTCTTAAAACAA
TATTCCATCAGATATACTCCAAAAAGTTTATCACTGATTGAGTTTGAAAA
CATAATTAAAAAACAACGAAAAAGAGCCCTTTTCAAGTCAACCAGATTTT
TAAGTTGTATTATTTGACAGAATAAATACTTTTTGAACTTTTTTGTATTT
ATGAAGTATTAAGATCGAAGAAGTTCTGATATAAAAAAGAAGTTGATTTT
CTTCTTCTTCTCCTTCATTTTTCATTTTCCTTTTTTCTATTTCTGGAATT
GTTTCTTCTTTATCGTAATATTCCACTCTAGACCAGCGGCCGAGGCAGTG
GATTGTGTCACTTCGTAGGGCACCCCTTAGATAAGGGCAAATTTTTGATA
TCATTCTCCTAATAGGGTGTAGAATTGACAAAAAAAATTTGCCCTTCGAA
TCTCCTGCAGTTTTTGAGTGAATCGATTTTTAGTTAATCGATAGAACTTA
TCAAGGGTCCCCCCTTTAGTAACGGTTTTTTCGAAGTCTGAAAATCAAAT
ATCTGCGACCACCAACGGATTCAGCGTGAAAGGTAGATAAAGAAAATGGG
GTTATTTGTTAAGTTTCGACCACCTGGTGCCGAGAAATGGCATTTTTGAG
GCGAAAAATCGACGTTTTTGGCGTTTTCCGATGACGTCAGCATTTTCCTA
GTAGCATTTTCAGAAAAAATCATTTGCACAACTGGATAGCCCTGAATTAG
TAGTATCCAAAAATGGTATGGTTTGTTAACTTTCGATGTCTAGATAATCT
CGAGATATTTTGGTTTAAATATTGAAAATTATCGATATTTTTTGCTGAGT
CAGCAGTTTTTCAGCATATTTATCCACCTTAAAAATGAATTATCTCGANN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNCAGGAAAATGCTGACGTCATCGGAAAACGCCAAAAACGTC
GATTTTTCGCCTTAAAAATGCCATTTCTCGGCACCAGGTGGTCGAAACTT
AACAATTAACCCCATTTTTTTTATCTTCTTTTCACGCTGAATCCGTTTGT
AGTCTCAGTCATTTGATTTTCAGACTTGGAAAAAACCGTAAGTAAAGGGG
GGATAAGTTCTTGATAAGTTCTATCGATTAACTACAAATCGATTCACTCG
AAAACTGCAGGAGATTCGAAGAGCAAATTTTTTTTGTCAATTCTACACCC
TATTAGGAGCATAATATCAAATATTTGCCCTGATCTAAGGGGTGCCCTAC
GAAAACCATTTTTAAGGCCTTTTTTGAATCTCGGACGCTGGTTTACTCCT
GTTTATCTTTTCAACAAGCACAAAACCGCTATATAATTAGAATTCTATCA
AAAGTTACAGCCTTTTGTCTCCACTGCAGATTATATTCCATGCATTGAGA
CAGACTTTAGTTCACTTATGATTCTGATAGCGCTCACATCAATGAGTAAA
ATAAAGAATTGGTGCAAGTAGCTCTGGGTGCGAGATTGGAATTAGAGCCT
TTTTTGACCTAATACTATGTAGCCATTATGAATTTGGCTTAATATTGATA
TGCTTCAATTTACTAAAAAGAGATTATCCGATTATTAAAAGTATACGCCA
AGATAAATAAGAAATATTTACAATATCTATCATACAAAAAATCCTATTTA
AAATAATATTAATATGAGTAGGTTACAAAAATATAATATCTAAAACTGCA
TTAAATAAAGAGATGTTTTTATAACAAAACTATTTACTATAGAGCGCTGA
AACTCAAAGAACAGCCATGAAATCATCCAGTTTCTTTGATATGATTAAAT
TCTGAGGAATAAATTTCAGAGATTTGGTGATAAAAAGTACAGCGAATATT
ACTTTAAATTTCGCTGATGATTCCGCTTAAATCTCACCAAACTTAATCTC
ACTAAGGAAATGGATTAATTGATAAGATTGTTGTATATTCATTGGTCGAT
GCAAGTCGATAGCATATTATCTCTAGCTGAGTATTAGCAGCTTCTTGAAC
AAAGTCTTTACTCTGTTTCGTTTCAGACATGAAGAATATTATACAAAAGG
AGAAGACAGCTAAACAATTTCTACGCCTGTTACCAGCTAAAAGAAAACTC
AAAAGGATTAAATCAGCATTTGGATGAAGGCGAACCTTATCATGTATCAA
AGCCTTACTGATAAAATTGTCAAAATATTCAAAACAAGGACATTAACGCA
TTTTGTATCTCCCAGGTGAAGAAAATATTCAGCACGAAGAACGATCAACG
ATATTTCCTGTATTCGAATCGTCAAAATATTGTTATACGTCAGTCAAGCA
GCCGGTCATGTATTATTAATCATGCGTGAACCACGATCATGAATTTGGAC
AATCGCCTGACAGTTTATGGTTAATACGTACTCGCTCTAAAGGGGAAATG
CGTTTCCTGGGACATGAAAATACACCAACATTGATAGTGAACATATACAC
AGCTTACTCTTCTTCTCTTCGGTTTCTTTGTTGTCGGTATCACCAAAACC
TGCGTCAAGCGAAATTCCCAATGAATACATTTCAAGTTCTGCAACGTTCC
ACTTGTTGATTGAAATCGAAAGAGATACATCGTCATGTTTGAACCAGCCA
GTATATCACCGAAAATCCAAACTTTCGATTGCGCAGACGCTCTGGTACAG
GCTAATGAAGAAGTCCAAAGCTAATACGGATTCTTCTTCTCTCTAACATT
TTCTCGGTGTAATATCCATGTAACACGCATATCATGTATGTAATATATAA
CTTTATAATATCAAGTATAGTGATAACAGGTAGAGTCCAAATGTTTTTGA
TAGGGAATCTCTTTCGGTGAATTATTTTTCAAACTGTTGGTGAACAAACG
TAAAGAAAACGTTATGAAGATACACAATGTGGCCACCAGTAAACAATAAT
ACGAAGTAGCCGGATTCCAAGGCTCCTTCAGAAATGTCACAGCATAGACA
CCAGATACCGTCATACTTAGAAGAGC Coding sequence (CDS) from alignment at scaffold_1:129476..135551- >TCONS_00045574 ID=TCONS_00045574|Name=TCONS_00045574|organism=Clytia hemisphaerica|type=CDS|length=1440bp|location=Sequence derived from alignment at scaffold_1:129476..135551- (Clytia hemisphaerica)
ACATGAAGAATATTATACAAAAGGAGAAGACAGCTAAACAATTTCTACGC
CTGTTACCAGCTAAAAGAAAACTCAAAAGGATTAAATCAGCATTTGGATG
AGAATATTCGGATCGCGTGGACACATACGATCACATCAATCACGAAGATG
GACGATTTCACGACGAACGTGATGACGAACAACATGAAGGAGATCACGAA
CACGGTGAAATACAACATGAAGACAGTCACGCTGAATTTCATGCAAGAAA
ACGATCCTTCAATCGGATGAAAGCAGATGAAGAAATTATCATCAAACTGG
CGCTTTATCAATTCAATACTATGCATAGTGGTAATTATTTTATTGCTTTT
TGGCGCACCATTGTTTGGACATCCCCATCATGAGCACTTCCAGAGCTATT
TGGATCATCGTGATTTCTACATGAATCATTTCAACGAGATGTTGAACAGG
AAGGGAGGCATGTATGATTCAAAACATGGTACATGAAGAATATTATACAA
AAGGAGAAGACAGCTAAACAATTTCTACGCCTGTTACCAGCTAAAAGAAA
ACTCAAAAGGATTAAATCAGCATTTGGATGAGAATATTCGGATCGCGTGG
ACACATACGATCACATCAATCACGAAGATGGACGATTTCACGACGAACGT
GATGACGAACAACATGAAGGAGATCACGAACACGGTGAAATACAACATGA
AGACAGTCACGCTGAATTTCATGCAAGAAAACGATCCTTCAATCGGATGA
AAGCAGATGAAGAAATTATCATCAAACTGGCGCTTTATCAATTCAATACT
ATGCATAGTGGTAATTATTTTATTGCTTTTTGGCGCACCATTGTTTGGAC
ATCCCCATCATGAGCACTTCCAGAGCTATTTGGATCATCGTGATTTCTAC
ATGAATCATTTCAACGAGATGTTGAACAGGAAGGGAGGCATGTATGATTC
AAAACATGGTACATGAAGAATATTATACAAAAGGAGAAGACAGCTAAACA
ATTTCTACGCCTGTTACCAGCTAAAAGAAAACTCAAAAGGATTAAATCAG
CATTTGGATGAGAATATTCGGATCGCGTGGACACATACGATCACATCAAT
CACGAAGATGGACGATTTCACGACGAACGTGATGACGAACAACATGAAGG
AGATCACGAACACGGTGAAATACAACATGAAGACAGTCACGCTGAATTTC
ATGCAAGAAAACGATCCTTCAATCGGATGAAAGCAGATGAAGAAATTATC
ATCAAACTGGCGCTTTATCAATTCAATACTATGCATAGTGGTAATTATTT
TATTGCTTTTTGGCGCACCATTGTTTGGACATCCCCATCATGAGCACTTC
CAGAGCTATTTGGATCATCGTGATTTCTACATGAATCATTTCAACGAGAT
GTTGAACAGGAAGGGAGGCATGTATGATTCAAAACATGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045574-exon-scaffold_1-1575043694:135298..135551 | TCONS_00045574-exon-scaffold_1-1575043694:135298..135551 | Clytia hemisphaerica | exon |
| TCONS_00045574-exon-scaffold_1-1575043694:132696..132870 | TCONS_00045574-exon-scaffold_1-1575043694:132696..132870 | Clytia hemisphaerica | exon |
| TCONS_00045574-exon-scaffold_1-1575043694:129476..130425 | TCONS_00045574-exon-scaffold_1-1575043694:129476..130425 | Clytia hemisphaerica | exon |
| TCONS_00045574-exon-scaffold_1-1510915933:135298..135551 | TCONS_00045574-exon-scaffold_1-1510915933:135298..135551 | Clytia hemisphaerica | exon |
| TCONS_00045574-exon-scaffold_1-1510915933:132696..132870 | TCONS_00045574-exon-scaffold_1-1510915933:132696..132870 | Clytia hemisphaerica | exon |
| TCONS_00045574-exon-scaffold_1-1510915933:129476..130425 | TCONS_00045574-exon-scaffold_1-1510915933:129476..130425 | Clytia hemisphaerica | exon |
| TCONS_00045574-exon-scaffold_1-1491911889:135298..135551 | TCONS_00045574-exon-scaffold_1-1491911889:135298..135551 | Clytia hemisphaerica | exon |
| TCONS_00045574-exon-scaffold_1-1491911889:132696..132870 | TCONS_00045574-exon-scaffold_1-1491911889:132696..132870 | Clytia hemisphaerica | exon |
| TCONS_00045574-exon-scaffold_1-1491911889:129476..130425 | TCONS_00045574-exon-scaffold_1-1491911889:129476..130425 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_1 | supercontig | scaffold_1:129476..135551 - |
Blast
The following BLAST results are available for this feature:
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