TCONS_00045536 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045536
Unique NameTCONS_00045536
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length510

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045536 ID=TCONS_00045536|Name=TCONS_00045536|organism=Clytia hemisphaerica|type=transcript|length=510bp
GATTACAACAGAAAGTTTTCATTTGGATAACAACAGAAAGTTTTCATTTG
GATAACAACAGAAAGCTTTCATTTGGATAACCTGGGATAACAACAGAAAG
CTTTCATTTGGATAACAACAGAAAGTTTTCATTTGGATAACAACAGAAAG
TTTTTACTTGGATAACAACAGAAAGTTTTTACTTGGATTACAACAGAAAG
TTTTCATTTGGATAACAACAGAAAGTTTTCATTTGGATAACAACAGAAAG
CTTTCATTTGGATAACAACAGAAAGCTTTCATTTGGATAACAACAGAAAG
TTTTCATTTGGATaacaacagaaagttttaatttggATAACAACAGAAAG
TTTTCATTTGGATAACCTGGGATAACAACAGAAAGTTTTCATTTGGATAA
CCTGGGATAACAACAGAAAGTTTTCATTTGGATAACCCGGGATAACAACA
GAAAGTTTTTACTTGGATAACAACAGAAAGTTTTTACTTGGATAACAACA
GAAAGTTTTC
Run BLAST on NCBI

transcript from alignment at sc0008218:20..529

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045536 ID=TCONS_00045536|Name=TCONS_00045536|organism=Clytia hemisphaerica|type=transcript|length=510bp|location=Sequence derived from alignment at sc0008218:20..529 (Clytia hemisphaerica)
GAAAACTTTCTGTTGTTATCCAAGTAAAAACTTTCTGTTGTTATCCAAGT
AAAAACTTTCTGTTGTTATCCCGGGTTATCCAAATGAAAACTTTCTGTTG
TTATCCCAGGTTATCCAAATGAAAACTTTCTGTTGTTATCCCAGGTTATC
CAAATGAAAACTTTCTGTTGTTATccaaattaaaactttctgttgttATC
CAAATGAAAACTTTCTGTTGTTATCCAAATGAAAGCTTTCTGTTGTTATC
CAAATGAAAGCTTTCTGTTGTTATCCAAATGAAAACTTTCTGTTGTTATC
CAAATGAAAACTTTCTGTTGTAATCCAAGTAAAAACTTTCTGTTGTTATC
CAAGTAAAAACTTTCTGTTGTTATCCAAATGAAAACTTTCTGTTGTTATC
CAAATGAAAGCTTTCTGTTGTTATCCCAGGTTATCCAAATGAAAGCTTTC
TGTTGTTATCCAAATGAAAACTTTCTGTTGTTATCCAAATGAAAACTTTC
TGTTGTAATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029113XLOC_029113Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045536-exon-sc0008218-1491911889:20..529TCONS_00045536-exon-sc0008218-1491911889:20..529Clytia hemisphaericaexon
TCONS_00045536-exon-sc0008218-1510915933:20..529TCONS_00045536-exon-sc0008218-1510915933:20..529Clytia hemisphaericaexon
TCONS_00045536-exon-sc0008218-1575043694:20..529TCONS_00045536-exon-sc0008218-1575043694:20..529Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0008218supercontigsc0008218:20..529 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.235733	0	0.533817	0.522256	0	0	0.151536	0	0.0993236	0.123028	0	0	0	0	0	0.0718244	0	0	0	0	0.22792	0.50027	0.270286	0	0	0.225882	1.61618	1.37986	0.915756	0.799724
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045536 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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