TCONS_00045491 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045491
Unique NameTCONS_00045491
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length335

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045491 ID=TCONS_00045491|Name=TCONS_00045491|organism=Clytia hemisphaerica|type=transcript|length=335bp
acagCTTATCACCAGACTGGTCACAACAGTGGTGTCATTCATGCAGGAAT
TTATTACGAGCCTGGTTCGTTGAAAGCTCTGTTATGTTGGAAGGGCTTAA
AAATGATGTATAATTACTGTGATGAGCATAACATACCATGTAAAAGGGTT
GGAAAGGTAGTATAGAAAGAATTGTAATTATTCTTACACAGCAACTCTTG
GTCcctaaaaattctcaaaaattctCAAGTTTTTAAACATCTTGTGGTAA
TGGTATCTTAGTTCGGGTTTGATGCAATGCCCTGAGTTTAACGGGGTTGG
AGAGCCAAGTAATAAGACATTGTAGGATAGGATAG
Run BLAST on NCBI

transcript from alignment at sc0008053:277..611

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045491 ID=TCONS_00045491|Name=TCONS_00045491|organism=Clytia hemisphaerica|type=transcript|length=335bp|location=Sequence derived from alignment at sc0008053:277..611 (Clytia hemisphaerica)
CTATCCTATCCTACAATGTCTTATTACTTGGCTCTCCAACCCCGTTAAAC
TCAGGGCATTGCATCAAACCCGAACTAAGATACCATTACCACAAGATGTT
TAAAAACTTGagaatttttgagaatttttaggGACCAAGAGTTGCTGTGT
AAGAATAATTACAATTCTTTCTATACTACCTTTCCAACCCTTTTACATGG
TATGTTATGCTCATCACAGTAATTATACATCATTTTTAAGCCCTTCCAAC
ATAACAGAGCTTTCAACGAACCAGGCTCGTAATAAATTCCTGCATGAATG
ACACCACTGTTGTGACCAGTCTGGTGATAAGctgt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029068XLOC_029068Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045491-exon-sc0008053-1491911889:277..611TCONS_00045491-exon-sc0008053-1491911889:277..611Clytia hemisphaericaexon
TCONS_00045491-exon-sc0008053-1510915933:277..611TCONS_00045491-exon-sc0008053-1510915933:277..611Clytia hemisphaericaexon
TCONS_00045491-exon-sc0008053-1575043694:277..611TCONS_00045491-exon-sc0008053-1575043694:277..611Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0008053supercontigsc0008053:277..611 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.56313	1.37285	0.318802	0.311898	0	0	1.44799	0.677793	4.74539	5.87793	2.85263	3.18785	3.55794	4.86179	2.87788	3.0884	3.38192	3.683	2.9931	2.19244	1.6334	4.38193	2.5827	3.22856	0	0	1.15825	1.64815	3.12515	2.22883
Blast
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BLAST of TCONS_00045491 vs. Swiss-Prot (Human)
Match: L2HDH (L-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Homo sapiens GN=L2HGDH PE=1 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 2.761e-16
Identity = 31/53 (58.49%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:    4 AYHQTGHNSGVIHAGIYYEPGSLKALLCWKGLKMMYNYCDEHNIPCKRVGKVV 162
            A HQTGHNSGVIH+GIYY+P SLKA LC +G  ++Y YC +  I  K+ GK++
Sbjct:   86 AVHQTGHNSGVIHSGIYYKPESLKAKLCVQGAALLYEYCQQKGISYKQCGKLI 138
The following BLAST results are available for this feature:
BLAST of TCONS_00045491 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
L2HDH2.761e-1658.49L-2-hydroxyglutarate dehydrogenase, mitochondrial ... [more]
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