TCONS_00045487 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045487
Unique NameTCONS_00045487
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length634

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045487 ID=TCONS_00045487|Name=TCONS_00045487|organism=Clytia hemisphaerica|type=transcript|length=634bp
GAGGAAAGCTGGAACATAGGTATGCAAGTAATTCAATACTGTTTATAAGT
GAAACAGATTTAGTGACTTTCTCCCAACAAGATGAATGCAGCTTCTCGTT
GTTAAGAACCAGTTGGAAAGCTTTCTGAAATAATGGAAAGTGTTCTCTGC
TAGTCAATAAAACAACATTTCCGAAACTTGCATCGATGACTTTGTCGGCA
ATTTCGGTTAAATCCNAAAGCTTTCTGAAATAATGGAAAGTGTTCTCTGC
TAGTCAATAAAACAACATTTCCGAAACTTGCATCGATGACTTTGTCGGCA
ATTTCGGTTAAATCAGTTTGCGCAAAAACATCAAGCCATTTGGAAAGTTG
AGCGGTAGGACAACGCGAGATAAGTTCGATAACTGCTTTTTCAATCCCTT
GCCAAGGAACAGACAACAAAAGCGTGGCAAATGATTGGATTGGCAACTCG
GGGATTAGACCATAAATTTCACTATCATTTCTGCAGCCCCATGATGACTT
GGGAGACCCCAAGACCTTTGATATAAATAATGATGTCAATTTTGAATCTG
CCAATTTGGTCAATATTTTGACCACCTTGACAATGTTTTTCTCTCCTTTC
TGTTGCATTCTTCCATGACTATTGTATCTCTGGT
Run BLAST on NCBI

protein sequence of TCONS_00045487-protein

>TCONS_00045487-protein ID=TCONS_00045487-protein|Name=TCONS_00045487-protein|organism=Clytia hemisphaerica|type=polypeptide|length=160bp
QRYNSHGRMQQKGEKNIVKVVKILTKLADSKLTSLFISKVLGSPKSSWGC
RNDSEIYGLIPELPIQSFATLLLSVPWQGIEKAVIELISRCPTAQLSKWL
DVFAQTDLTEIADKVIDASFGNVVLLTSREHFPLFQKAXGFNRNCRQSHR
CKFRKCCFID
Run BLAST on NCBI

transcript from alignment at sc0008025:3..636

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045487 ID=TCONS_00045487|Name=TCONS_00045487|organism=Clytia hemisphaerica|type=transcript|length=634bp|location=Sequence derived from alignment at sc0008025:3..636 (Clytia hemisphaerica)
ACCAGAGATACAATAGTCATGGAAGAATGCAACAGAAAGGAGAGAAAAAC
ATTGTCAAGGTGGTCAAAATATTGACCAAATTGGCAGATTCAAAATTGAC
ATCATTATTTATATCAAAGGTCTTGGGGTCTCCCAAGTCATCATGGGGCT
GCAGAAATGATAGTGAAATTTATGGTCTAATCCCCGAGTTGCCAATCCAA
TCATTTGCCACGCTTTTGTTGTCTGTTCCTTGGCAAGGGATTGAAAAAGC
AGTTATCGAACTTATCTCGCGTTGTCCTACCGCTCAACTTTCCAAATGGC
TTGATGTTTTTGCGCAAACTGATTTAACCGAAATTGCCGACAAAGTCATC
GATGCAAGTTTCGGAAATGTTGTTTTATTGACTAGCAGAGAACACTTTCC
ATTATTTCAGAAAGCTTTNGGATTTAACCGAAATTGCCGACAAAGTCATC
GATGCAAGTTTCGGAAATGTTGTTTTATTGACTAGCAGAGAACACTTTCC
ATTATTTCAGAAAGCTTTCCAACTGGTTCTTAACAACGAGAAGCTGCATT
CATCTTGTTGGGAGAAAGTCACTAAATCTGTTTCACTTATAAACAGTATT
GAATTACTTGCATACCTATGTTCCAGCTTTCCTC

Coding sequence (CDS) from alignment at sc0008025:3..636

>TCONS_00045487 ID=TCONS_00045487|Name=TCONS_00045487|organism=Clytia hemisphaerica|type=CDS|length=483bp|location=Sequence derived from alignment at sc0008025:3..636 (Clytia hemisphaerica)
CAGAGATACAATAGTCATGGAAGAATGCAACAGAAAGGAGAGAAAAACAT
TGTCAAGGTGGTCAAAATATTGACCAAATTGGCAGATTCAAAATTGACAT
CATTATTTATATCAAAGGTCTTGGGGTCTCCCAAGTCATCATGGGGCTGC
AGAAATGATAGTGAAATTTATGGTCTAATCCCCGAGTTGCCAATCCAATC
ATTTGCCACGCTTTTGTTGTCTGTTCCTTGGCAAGGGATTGAAAAAGCAG
TTATCGAACTTATCTCGCGTTGTCCTACCGCTCAACTTTCCAAATGGCTT
GATGTTTTTGCGCAAACTGATTTAACCGAAATTGCCGACAAAGTCATCGA
TGCAAGTTTCGGAAATGTTGTTTTATTGACTAGCAGAGAACACTTTCCAT
TATTTCAGAAAGCTTTNGGATTTAACCGAAATTGCCGACAAAGTCATCGA
TGCAAGTTTCGGAAATGTTGTTTTATTGACTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029064XLOC_029064Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045487-proteinTCONS_00045487-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045487-exon-sc0008025-1491911889:3..636TCONS_00045487-exon-sc0008025-1491911889:3..636Clytia hemisphaericaexon
TCONS_00045487-exon-sc0008025-1510915933:3..636TCONS_00045487-exon-sc0008025-1510915933:3..636Clytia hemisphaericaexon
TCONS_00045487-exon-sc0008025-1575043694:3..636TCONS_00045487-exon-sc0008025-1575043694:3..636Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0008025supercontigsc0008025:3..636 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.68505	2.17147	1.45147	0.635278	0.130641	0	0.604137	1.06367	0.135815	0.472312	0.496279	0.344527	0.0686213	0.421017	0.673349	0.440103	0.763861	0.886725	0.10885	0.183446	0.474626	0.679387	2.81079	3.77705	0	0	0.509641	0.266403	2.4148	3.64265
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045487 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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