TCONS_00045447 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045447
Unique NameTCONS_00045447
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length583

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045447 ID=TCONS_00045447|Name=TCONS_00045447|organism=Clytia hemisphaerica|type=transcript|length=583bp
gccaaaatttgcgaaaatcgcgaaagtttctgctcgtgaaagtttgtacg
cctaaaggaTATGTTGTTATAGCTGTAGAgcacttttaaaaaatatattt
ttcatcctTTTTCGCGTGAATAAATTCCTTGTATACCAGAATAAACCATT
GATTTATTGAACTTGATTTTAGCGCCAGCAGTGGAGGAAAGCGGTCGATT
AAAAGTCGATACATCATTTAGAGTTGAaggttttccaaacatttttgcAA
TCGGTGACTGTACATCGTTCCAAGAACCGAAAATCGGTGCATTAGCCCAA
GAGCATGCCAAACTACTTGGTAAATCAATGCTTCTGTTGGACAAAGGGAA
ACAACCGGCTGTCTACAAACCCGaCAAATTTTTCTTCGTTGCTGGTGTAA
CATTGGGATGGAATAGCGCATTTGCACGTCTTAAACCTGACATAAAGTTC
CCTGTCTTcatcatgaagaaactaaaggGACAGAAGCTGTTCACAGACCG
TTATTGGAAAGATATGCGGCAGCCTTATCCTGAATAACCAGCCCATCAAT
TCATATTCACACAAACATTCATTCATTCCCCTT
Run BLAST on NCBI

transcript from alignment at sc0007853:1..678-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045447 ID=TCONS_00045447|Name=TCONS_00045447|organism=Clytia hemisphaerica|type=transcript|length=678bp|location=Sequence derived from alignment at sc0007853:1..678- (Clytia hemisphaerica)
GCCAAAATTTGCGAAAATCGCGAAAGTTTCTGCTCGTGAAAGTTTGTACG
CCTAAAGGATATGTTGTTATAGCTGTAGAGCACTTTTAAAAAATATATTT
TTCATCCTTTTTCGCGTGAATAAATTCCTTGTATACCAGAATAAACCATT
GATTTATTGAACTTGATTTTAGCGCCAGCAGTGGAGGAAAGCGGTCGATT
AAAAGTCGATACATCATTTAGAGTTGAAGGTTTTCCAAACATTTTTGCAA
TCGGTGACTGTACATCGTTCCAAGAACCGAAAATCGGTGCATTAGCCCAA
GAGCATGCCAAACTACTTGGTAAATCAATGCTTCTGTTGGACAAAGGGAA
ACAACCGGCTGTCTACAAACCCGGTAAGATCCCATAACTAATCAAATCTC
ATTTTGTCTTTTATCCGTCTTTATTTAACTCAACAATTTCTTTTGAAATG
CATTTCATTTTCCTTTAGACAAATTTTTCTTCGTTGCTGGTGTAACATTG
GGATGGAATAGCGCATTTGCACGTCTTAAACCTGACATAAAGTTCCCTGT
CTTCATCATGAAGAAACTAAAGGGACAGAAGCTGTTCACAGACCGTTATT
GGAAAGATATGCGGCAGCCTTATCCTGAATAACCAGCCCATCAATTCATA
TTCACACAAACATTCATTCATTCCCCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029025XLOC_029025Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045447-exon-sc0007853-1575043694:306..678TCONS_00045447-exon-sc0007853-1575043694:306..678Clytia hemisphaericaexon
TCONS_00045447-exon-sc0007853-1575043694:1..210TCONS_00045447-exon-sc0007853-1575043694:1..210Clytia hemisphaericaexon
TCONS_00045447-exon-sc0007853-1510915933:306..678TCONS_00045447-exon-sc0007853-1510915933:306..678Clytia hemisphaericaexon
TCONS_00045447-exon-sc0007853-1510915933:1..210TCONS_00045447-exon-sc0007853-1510915933:1..210Clytia hemisphaericaexon
TCONS_00045447-exon-sc0007853-1491911889:306..678TCONS_00045447-exon-sc0007853-1491911889:306..678Clytia hemisphaericaexon
TCONS_00045447-exon-sc0007853-1491911889:1..210TCONS_00045447-exon-sc0007853-1491911889:1..210Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007853supercontigsc0007853:1..678 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
94.4393	93.2534	32.3536	24.4167	55.775	42.1127	58.4178	56.8594	37.6503	48.1212	72.7018	32.4095	87.552	73.0527	60.2747	77.4589	33.5405	29.4147	93.5782	188.248	12.4734	13.9016	35.2398	33.3643	23.6286	20.6335	8.06448	6.10793	12.9852	12.9798
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045447 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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